Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0247

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0246 and Rru_AR0010 are separated by 257 nucleotidesRru_AR0010 and Rru_A0247 are separated by 319 nucleotidesRru_A0247 and Rru_A0248 are separated by 56 nucleotides Rru_A0246: Rru_A0246 - Ppx/GppA phosphatase (NCBI), at 305,449 to 306,648 _A0246 Rru_AR0010: Rru_AR0010 - tRNA-Gln (NCBI), at 306,906 to 306,979 _AR0010 Rru_A0247: Rru_A0247 - Periplasmic binding protein/LacI transcriptional regulator (NCBI), at 307,299 to 308,303 _A0247 Rru_A0248: Rru_A0248 - inner-membrane translocator (NCBI), at 308,360 to 309,376 _A0248 Position (kb) 307 308 309Strain fitness (log2 ratio) -3 -2 -1 0 1at 306.527 kb on + strand, within Rru_A0246at 306.528 kb on - strand, within Rru_A0246at 306.528 kb on - strand, within Rru_A0246at 306.528 kb on - strand, within Rru_A0246at 306.670 kb on + strandat 306.752 kb on + strandat 306.752 kb on + strandat 306.789 kb on + strandat 306.790 kb on - strandat 306.790 kb on - strandat 306.862 kb on + strandat 306.862 kb on + strandat 306.862 kb on + strandat 306.866 kb on + strandat 306.866 kb on + strandat 306.866 kb on + strandat 306.885 kb on + strandat 306.885 kb on + strandat 306.885 kb on + strandat 307.026 kb on + strandat 307.026 kb on + strandat 307.077 kb on - strandat 307.077 kb on - strandat 307.105 kb on + strandat 307.194 kb on + strandat 307.301 kb on - strandat 307.363 kb on + strandat 307.363 kb on + strandat 307.405 kb on + strand, within Rru_A0247at 307.405 kb on + strand, within Rru_A0247at 307.405 kb on + strand, within Rru_A0247at 307.406 kb on - strand, within Rru_A0247at 307.435 kb on + strand, within Rru_A0247at 307.436 kb on - strand, within Rru_A0247at 307.436 kb on - strand, within Rru_A0247at 307.436 kb on - strand, within Rru_A0247at 308.017 kb on + strand, within Rru_A0247at 308.017 kb on + strand, within Rru_A0247at 308.018 kb on - strand, within Rru_A0247at 308.018 kb on - strand, within Rru_A0247at 308.098 kb on + strand, within Rru_A0247at 308.098 kb on + strand, within Rru_A0247at 308.111 kb on - strand, within Rru_A0247at 308.111 kb on - strand, within Rru_A0247at 308.111 kb on - strand, within Rru_A0247at 308.162 kb on - strand, within Rru_A0247at 308.162 kb on - strand, within Rru_A0247at 308.192 kb on + strand, within Rru_A0247at 308.192 kb on + strand, within Rru_A0247at 308.193 kb on - strand, within Rru_A0247at 308.193 kb on - strand, within Rru_A0247at 308.193 kb on - strand, within Rru_A0247at 308.193 kb on - strand, within Rru_A0247at 308.200 kb on + strand, within Rru_A0247at 308.200 kb on + strand, within Rru_A0247at 308.200 kb on + strand, within Rru_A0247at 308.201 kb on - strand, within Rru_A0247at 308.286 kb on - strandat 308.334 kb on - strandat 308.434 kb on - strandat 308.434 kb on - strandat 308.577 kb on + strand, within Rru_A0248at 308.577 kb on + strand, within Rru_A0248at 308.577 kb on + strand, within Rru_A0248at 308.578 kb on - strand, within Rru_A0248at 308.578 kb on - strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.664 kb on + strand, within Rru_A0248at 308.665 kb on - strand, within Rru_A0248at 308.665 kb on - strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.736 kb on + strand, within Rru_A0248at 308.737 kb on - strand, within Rru_A0248at 308.737 kb on - strand, within Rru_A0248at 308.742 kb on + strand, within Rru_A0248at 308.762 kb on - strand, within Rru_A0248at 308.762 kb on - strand, within Rru_A0248at 309.043 kb on - strand, within Rru_A0248at 309.195 kb on - strand, within Rru_A0248at 309.221 kb on - strand, within Rru_A0248

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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306,527 + Rru_A0246 0.90 -0.4
306,528 - Rru_A0246 0.90 -0.0
306,528 - Rru_A0246 0.90 -2.0
306,528 - Rru_A0246 0.90 -0.0
306,670 + -0.0
306,752 + -2.6
306,752 + -0.0
306,789 + -0.0
306,790 - -2.2
306,790 - -0.0
306,862 + -1.0
306,862 + -1.0
306,862 + -0.0
306,866 + -2.8
306,866 + -0.0
306,866 + -2.7
306,885 + -0.0
306,885 + -0.0
306,885 + -3.4
307,026 + -1.3
307,026 + -0.0
307,077 - -1.9
307,077 - -0.0
307,105 + -0.0
307,194 + -1.8
307,301 - -0.0
307,363 + -1.0
307,363 + -1.5
307,405 + Rru_A0247 0.11 -0.0
307,405 + Rru_A0247 0.11 -1.0
307,405 + Rru_A0247 0.11 -0.0
307,406 - Rru_A0247 0.11 -0.0
307,435 + Rru_A0247 0.14 -2.3
307,436 - Rru_A0247 0.14 -0.0
307,436 - Rru_A0247 0.14 -0.0
307,436 - Rru_A0247 0.14 -1.3
308,017 + Rru_A0247 0.71 -0.0
308,017 + Rru_A0247 0.71 -2.2
308,018 - Rru_A0247 0.72 -0.0
308,018 - Rru_A0247 0.72 -0.0
308,098 + Rru_A0247 0.80 -0.0
308,098 + Rru_A0247 0.80 -0.0
308,111 - Rru_A0247 0.81 -0.0
308,111 - Rru_A0247 0.81 -0.0
308,111 - Rru_A0247 0.81 -0.0
308,162 - Rru_A0247 0.86 -0.0
308,162 - Rru_A0247 0.86 -0.0
308,192 + Rru_A0247 0.89 -0.0
308,192 + Rru_A0247 0.89 -0.0
308,193 - Rru_A0247 0.89 -0.0
308,193 - Rru_A0247 0.89 -0.0
308,193 - Rru_A0247 0.89 -1.4
308,193 - Rru_A0247 0.89 -0.0
308,200 + Rru_A0247 0.90 -0.0
308,200 + Rru_A0247 0.90 -0.0
308,200 + Rru_A0247 0.90 -2.5
308,201 - Rru_A0247 0.90 -0.0
308,286 - -1.4
308,334 - -0.0
308,434 - -0.0
308,434 - -0.0
308,577 + Rru_A0248 0.21 -0.0
308,577 + Rru_A0248 0.21 -0.0
308,577 + Rru_A0248 0.21 -0.0
308,578 - Rru_A0248 0.21 -3.1
308,578 - Rru_A0248 0.21 -0.0
308,664 + Rru_A0248 0.30 -0.0
308,664 + Rru_A0248 0.30 -1.1
308,664 + Rru_A0248 0.30 -0.0
308,664 + Rru_A0248 0.30 -0.0
308,664 + Rru_A0248 0.30 -1.0
308,664 + Rru_A0248 0.30 -0.0
308,665 - Rru_A0248 0.30 -1.0
308,665 - Rru_A0248 0.30 -3.4
308,736 + Rru_A0248 0.37 -0.0
308,736 + Rru_A0248 0.37 -0.0
308,736 + Rru_A0248 0.37 -0.0
308,736 + Rru_A0248 0.37 -3.0
308,737 - Rru_A0248 0.37 -1.8
308,737 - Rru_A0248 0.37 -1.0
308,742 + Rru_A0248 0.38 -0.0
308,762 - Rru_A0248 0.40 -0.0
308,762 - Rru_A0248 0.40 -0.0
309,043 - Rru_A0248 0.67 -2.5
309,195 - Rru_A0248 0.82 -0.0
309,221 - Rru_A0248 0.85 -0.0

Or see this region's nucleotide sequence