Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0187 and Rru_A0188 are separated by 493 nucleotides Rru_A0188 and Rru_A0189 overlap by 4 nucleotides
Rru_A0187: Rru_A0187 - hypothetical protein (NCBI), at 226,301 to 226,591
_A0187
Rru_A0188: Rru_A0188 - ABC transporter, transmembrane region (NCBI), at 227,085 to 228,815
_A0188
Rru_A0189: Rru_A0189 - ABC transporter, transmembrane region (NCBI), at 228,812 to 230,593
_A0189
Position (kb) 227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 226.105 kb on + strand at 226.106 kb on - strand at 226.143 kb on - strand at 226.165 kb on - strand at 226.176 kb on - strand at 226.256 kb on + strand at 226.399 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.413 kb on - strand, within Rru_A0187 at 226.534 kb on + strand, within Rru_A0187 at 226.589 kb on + strand at 226.594 kb on - strand at 226.676 kb on + strand at 226.676 kb on + strand at 226.677 kb on - strand at 226.677 kb on - strand at 226.681 kb on + strand at 226.681 kb on + strand at 226.681 kb on + strand at 227.019 kb on + strand at 227.019 kb on + strand at 227.030 kb on - strand at 227.032 kb on - strand at 227.064 kb on + strand at 227.065 kb on - strand at 227.126 kb on - strand at 227.212 kb on - strand at 227.908 kb on + strand, within Rru_A0188 at 227.908 kb on + strand, within Rru_A0188 at 227.908 kb on + strand, within Rru_A0188 at 227.908 kb on + strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.909 kb on - strand, within Rru_A0188 at 227.953 kb on + strand, within Rru_A0188 at 227.954 kb on - strand, within Rru_A0188 at 227.954 kb on - strand, within Rru_A0188 at 227.954 kb on - strand, within Rru_A0188 at 227.987 kb on - strand, within Rru_A0188 at 228.209 kb on - strand, within Rru_A0188 at 228.209 kb on - strand, within Rru_A0188 at 228.476 kb on + strand, within Rru_A0188 at 228.476 kb on + strand, within Rru_A0188 at 228.551 kb on + strand, within Rru_A0188 at 228.551 kb on + strand, within Rru_A0188 at 228.551 kb on + strand, within Rru_A0188 at 228.551 kb on + strand, within Rru_A0188 at 228.552 kb on - strand, within Rru_A0188 at 228.552 kb on - strand, within Rru_A0188 at 228.552 kb on - strand, within Rru_A0188 at 228.552 kb on - strand, within Rru_A0188 at 228.697 kb on + strand at 228.697 kb on + strand at 228.697 kb on + strand at 228.697 kb on + strand at 228.904 kb on - strand at 229.231 kb on - strand, within Rru_A0189 at 229.325 kb on + strand, within Rru_A0189 at 229.325 kb on + strand, within Rru_A0189 at 229.407 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.774 kb on + strand, within Rru_A0189 at 229.775 kb on - strand, within Rru_A0189
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 226,105 + -1.6 226,106 - -0.0 226,143 - -0.0 226,165 - -1.6 226,176 - -0.0 226,256 + -0.0 226,399 - Rru_A0187 0.34 -0.0 226,413 - Rru_A0187 0.38 -0.0 226,413 - Rru_A0187 0.38 -2.7 226,413 - Rru_A0187 0.38 -0.9 226,534 + Rru_A0187 0.80 -1.0 226,589 + -3.2 226,594 - -0.8 226,676 + -0.0 226,676 + -0.0 226,677 - -2.8 226,677 - -0.0 226,681 + -1.0 226,681 + -0.0 226,681 + -0.0 227,019 + -1.6 227,019 + -0.1 227,030 - -1.1 227,032 - -0.0 227,064 + -2.2 227,065 - -2.6 227,126 - -0.0 227,212 - -0.0 227,908 + Rru_A0188 0.48 -2.8 227,908 + Rru_A0188 0.48 -0.0 227,908 + Rru_A0188 0.48 -0.0 227,908 + Rru_A0188 0.48 -0.0 227,909 - Rru_A0188 0.48 -0.0 227,909 - Rru_A0188 0.48 -0.0 227,909 - Rru_A0188 0.48 -1.6 227,909 - Rru_A0188 0.48 -0.0 227,909 - Rru_A0188 0.48 -0.0 227,909 - Rru_A0188 0.48 -1.0 227,909 - Rru_A0188 0.48 -0.0 227,953 + Rru_A0188 0.50 -1.0 227,954 - Rru_A0188 0.50 -0.0 227,954 - Rru_A0188 0.50 -0.0 227,954 - Rru_A0188 0.50 -2.0 227,987 - Rru_A0188 0.52 -2.5 228,209 - Rru_A0188 0.65 -0.0 228,209 - Rru_A0188 0.65 -0.5 228,476 + Rru_A0188 0.80 -1.0 228,476 + Rru_A0188 0.80 -1.0 228,551 + Rru_A0188 0.85 -0.0 228,551 + Rru_A0188 0.85 -0.0 228,551 + Rru_A0188 0.85 -1.0 228,551 + Rru_A0188 0.85 -0.0 228,552 - Rru_A0188 0.85 -0.0 228,552 - Rru_A0188 0.85 -0.0 228,552 - Rru_A0188 0.85 -0.0 228,552 - Rru_A0188 0.85 -0.8 228,697 + -0.0 228,697 + -0.0 228,697 + -0.0 228,697 + -0.0 228,904 - -0.0 229,231 - Rru_A0189 0.24 -0.0 229,325 + Rru_A0189 0.29 -1.1 229,325 + Rru_A0189 0.29 -0.7 229,407 + Rru_A0189 0.33 -2.2 229,774 + Rru_A0189 0.54 -0.0 229,774 + Rru_A0189 0.54 -1.2 229,774 + Rru_A0189 0.54 -0.0 229,774 + Rru_A0189 0.54 -0.0 229,774 + Rru_A0189 0.54 -0.0 229,774 + Rru_A0189 0.54 -0.0 229,774 + Rru_A0189 0.54 -0.0 229,775 - Rru_A0189 0.54 -0.0
Or see this region's nucleotide sequence