Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0142

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0141 and Rru_A0142 are separated by 323 nucleotidesRru_A0142 and Rru_A0143 are separated by 78 nucleotidesRru_A0143 and Rru_A0144 overlap by 14 nucleotides Rru_A0141: Rru_A0141 - Porphobilinogen synthase (NCBI), at 164,512 to 165,495 _A0141 Rru_A0142: Rru_A0142 - Putative cyclase (NCBI), at 165,819 to 166,781 _A0142 Rru_A0143: Rru_A0143 - GCN5-related N-acetyltransferase (NCBI), at 166,860 to 167,525 _A0143 Rru_A0144: Rru_A0144 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 167,512 to 168,615 _A0144 Position (kb) 165 166 167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 164.834 kb on + strand, within Rru_A0141at 164.834 kb on + strand, within Rru_A0141at 164.834 kb on + strand, within Rru_A0141at 164.835 kb on - strand, within Rru_A0141at 164.835 kb on - strand, within Rru_A0141at 164.835 kb on - strand, within Rru_A0141at 164.872 kb on + strand, within Rru_A0141at 164.916 kb on - strand, within Rru_A0141at 164.922 kb on + strand, within Rru_A0141at 165.182 kb on - strand, within Rru_A0141at 165.495 kb on + strandat 165.495 kb on + strandat 165.495 kb on + strandat 165.495 kb on + strandat 165.496 kb on - strandat 165.496 kb on - strandat 165.538 kb on + strandat 165.538 kb on + strandat 165.539 kb on - strandat 165.605 kb on - strandat 165.634 kb on + strandat 165.634 kb on + strandat 165.634 kb on + strandat 165.634 kb on + strandat 165.635 kb on - strandat 165.946 kb on + strand, within Rru_A0142at 165.946 kb on + strand, within Rru_A0142at 165.946 kb on + strand, within Rru_A0142at 165.947 kb on - strand, within Rru_A0142at 165.947 kb on - strand, within Rru_A0142at 166.106 kb on + strand, within Rru_A0142at 166.107 kb on - strand, within Rru_A0142at 166.318 kb on + strand, within Rru_A0142at 166.319 kb on - strand, within Rru_A0142at 166.319 kb on - strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.499 kb on + strand, within Rru_A0142at 166.501 kb on + strand, within Rru_A0142at 166.501 kb on + strand, within Rru_A0142at 166.501 kb on + strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.529 kb on - strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.631 kb on - strand, within Rru_A0142at 166.631 kb on - strand, within Rru_A0142at 166.825 kb on + strandat 166.826 kb on - strandat 166.826 kb on - strandat 166.827 kb on + strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.878 kb on + strandat 166.879 kb on - strandat 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.010 kb on - strand, within Rru_A0143at 167.010 kb on - strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.153 kb on + strand, within Rru_A0143at 167.154 kb on - strand, within Rru_A0143at 167.200 kb on + strand, within Rru_A0143at 167.513 kb on + strandat 167.561 kb on + strandat 167.561 kb on + strandat 167.562 kb on - strandat 167.562 kb on - strandat 167.627 kb on + strand, within Rru_A0144at 167.627 kb on + strand, within Rru_A0144at 167.628 kb on - strand, within Rru_A0144at 167.628 kb on - strand, within Rru_A0144

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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164,834 + Rru_A0141 0.33 +0.0
164,834 + Rru_A0141 0.33 +0.0
164,834 + Rru_A0141 0.33 +0.0
164,835 - Rru_A0141 0.33 +0.0
164,835 - Rru_A0141 0.33 -1.6
164,835 - Rru_A0141 0.33 -1.0
164,872 + Rru_A0141 0.37 -3.0
164,916 - Rru_A0141 0.41 +0.0
164,922 + Rru_A0141 0.42 +0.0
165,182 - Rru_A0141 0.68 -2.7
165,495 + +0.0
165,495 + +0.0
165,495 + +0.0
165,495 + -1.0
165,496 - -3.1
165,496 - +0.0
165,538 + -2.3
165,538 + -0.4
165,539 - -1.1
165,605 - +0.0
165,634 + +0.0
165,634 + -1.9
165,634 + +0.0
165,634 + -2.1
165,635 - +0.0
165,946 + Rru_A0142 0.13 +0.0
165,946 + Rru_A0142 0.13 +0.0
165,946 + Rru_A0142 0.13 +0.0
165,947 - Rru_A0142 0.13 +0.0
165,947 - Rru_A0142 0.13 +0.0
166,106 + Rru_A0142 0.30 +0.0
166,107 - Rru_A0142 0.30 +0.0
166,318 + Rru_A0142 0.52 +0.0
166,319 - Rru_A0142 0.52 -1.0
166,319 - Rru_A0142 0.52 +0.0
166,378 + Rru_A0142 0.58 -2.0
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 -1.5
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 -2.6
166,378 + Rru_A0142 0.58 -2.1
166,379 - Rru_A0142 0.58 +0.1
166,379 - Rru_A0142 0.58 -2.8
166,379 - Rru_A0142 0.58 +0.2
166,379 - Rru_A0142 0.58 -2.3
166,379 - Rru_A0142 0.58 +0.0
166,471 + Rru_A0142 0.68 -1.1
166,471 + Rru_A0142 0.68 -1.5
166,471 + Rru_A0142 0.68 +0.0
166,471 + Rru_A0142 0.68 +0.0
166,471 + Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 -1.9
166,472 - Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 +0.0
166,499 + Rru_A0142 0.71 +0.0
166,501 + Rru_A0142 0.71 -2.0
166,501 + Rru_A0142 0.71 -0.1
166,501 + Rru_A0142 0.71 +0.0
166,502 - Rru_A0142 0.71 +0.0
166,502 - Rru_A0142 0.71 +0.0
166,502 - Rru_A0142 0.71 +0.0
166,502 - Rru_A0142 0.71 -3.9
166,529 - Rru_A0142 0.74 -1.2
166,630 + Rru_A0142 0.84 +0.0
166,630 + Rru_A0142 0.84 -3.0
166,630 + Rru_A0142 0.84 +0.0
166,631 - Rru_A0142 0.84 +0.0
166,631 - Rru_A0142 0.84 +0.0
166,825 + +0.5
166,826 - +0.0
166,826 - +0.0
166,827 + +0.0
166,828 - +0.0
166,828 - +0.0
166,828 - -2.7
166,828 - +0.0
166,878 + -1.0
166,879 - +0.0
166,945 - Rru_A0143 0.13 +0.0
166,945 - Rru_A0143 0.13 +0.0
166,945 - Rru_A0143 0.13 +0.0
166,945 - Rru_A0143 0.13 -2.7
166,945 - Rru_A0143 0.13 -1.3
166,945 - Rru_A0143 0.13 +0.0
167,009 + Rru_A0143 0.22 +0.0
167,009 + Rru_A0143 0.22 -2.6
167,009 + Rru_A0143 0.22 +0.0
167,010 - Rru_A0143 0.23 +0.0
167,010 - Rru_A0143 0.23 +0.0
167,148 + Rru_A0143 0.43 +0.0
167,148 + Rru_A0143 0.43 +0.0
167,148 + Rru_A0143 0.43 +0.0
167,148 + Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 -2.3
167,149 - Rru_A0143 0.43 +1.4
167,149 - Rru_A0143 0.43 +0.0
167,153 + Rru_A0143 0.44 +0.0
167,154 - Rru_A0143 0.44 -1.0
167,200 + Rru_A0143 0.51 +0.0
167,513 + +0.0
167,561 + -2.4
167,561 + +0.0
167,562 - -2.0
167,562 - +0.0
167,627 + Rru_A0144 0.10 -1.0
167,627 + Rru_A0144 0.10 +0.0
167,628 - Rru_A0144 0.11 -2.9
167,628 - Rru_A0144 0.11 +0.0

Or see this region's nucleotide sequence