Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0141

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0139 and Rru_A0140 are separated by 72 nucleotidesRru_A0140 and Rru_A0141 are separated by 32 nucleotidesRru_A0141 and Rru_A0142 are separated by 323 nucleotides Rru_A0139: Rru_A0139 - Transcriptional Regulator, MarR family (NCBI), at 163,283 to 163,636 _A0139 Rru_A0140: Rru_A0140 - Transcriptional Regulator, AraC family (NCBI), at 163,709 to 164,479 _A0140 Rru_A0141: Rru_A0141 - Porphobilinogen synthase (NCBI), at 164,512 to 165,495 _A0141 Rru_A0142: Rru_A0142 - Putative cyclase (NCBI), at 165,819 to 166,781 _A0142 Position (kb) 164 165 166Strain fitness (log2 ratio) -3 -2 -1 0 1at 163.516 kb on + strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.517 kb on - strand, within Rru_A0139at 163.676 kb on - strandat 163.676 kb on - strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.687 kb on - strandat 163.717 kb on + strandat 163.718 kb on - strandat 163.730 kb on + strandat 163.730 kb on + strandat 163.730 kb on + strandat 163.731 kb on - strandat 163.731 kb on - strandat 163.776 kb on - strandat 163.776 kb on - strandat 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.829 kb on + strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.869 kb on - strand, within Rru_A0140at 163.869 kb on - strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.967 kb on - strand, within Rru_A0140at 164.075 kb on + strand, within Rru_A0140at 164.076 kb on - strand, within Rru_A0140at 164.115 kb on + strand, within Rru_A0140at 164.116 kb on - strand, within Rru_A0140at 164.116 kb on - strand, within Rru_A0140at 164.116 kb on - strand, within Rru_A0140at 164.118 kb on + strand, within Rru_A0140at 164.118 kb on + strand, within Rru_A0140at 164.118 kb on + strand, within Rru_A0140at 164.119 kb on - strand, within Rru_A0140at 164.119 kb on - strand, within Rru_A0140at 164.188 kb on + strand, within Rru_A0140at 164.189 kb on - strand, within Rru_A0140at 164.305 kb on - strand, within Rru_A0140at 164.305 kb on - strand, within Rru_A0140at 164.402 kb on + strand, within Rru_A0140at 164.403 kb on - strandat 164.403 kb on - strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.465 kb on + strandat 164.466 kb on - strandat 164.466 kb on - strandat 164.555 kb on + strandat 164.663 kb on + strand, within Rru_A0141at 164.663 kb on + strand, within Rru_A0141at 164.664 kb on - strand, within Rru_A0141at 164.682 kb on - strand, within Rru_A0141at 164.682 kb on - strand, within Rru_A0141at 164.736 kb on - strand, within Rru_A0141at 164.736 kb on - strand, within Rru_A0141at 164.834 kb on + strand, within Rru_A0141at 164.834 kb on + strand, within Rru_A0141at 164.834 kb on + strand, within Rru_A0141at 164.835 kb on - strand, within Rru_A0141at 164.835 kb on - strand, within Rru_A0141at 164.835 kb on - strand, within Rru_A0141at 164.872 kb on + strand, within Rru_A0141at 164.916 kb on - strand, within Rru_A0141at 164.922 kb on + strand, within Rru_A0141at 165.182 kb on - strand, within Rru_A0141at 165.495 kb on + strandat 165.495 kb on + strandat 165.495 kb on + strandat 165.495 kb on + strandat 165.496 kb on - strandat 165.496 kb on - strandat 165.538 kb on + strandat 165.538 kb on + strandat 165.539 kb on - strandat 165.605 kb on - strandat 165.634 kb on + strandat 165.634 kb on + strandat 165.634 kb on + strandat 165.634 kb on + strandat 165.635 kb on - strandat 165.946 kb on + strand, within Rru_A0142at 165.946 kb on + strand, within Rru_A0142at 165.946 kb on + strand, within Rru_A0142at 165.947 kb on - strand, within Rru_A0142at 165.947 kb on - strand, within Rru_A0142at 166.106 kb on + strand, within Rru_A0142at 166.107 kb on - strand, within Rru_A0142at 166.318 kb on + strand, within Rru_A0142at 166.319 kb on - strand, within Rru_A0142at 166.319 kb on - strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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163,516 + Rru_A0139 0.66 +0.0
163,516 + Rru_A0139 0.66 +0.0
163,516 + Rru_A0139 0.66 +0.0
163,517 - Rru_A0139 0.66 +0.0
163,676 - +0.0
163,676 - +0.0
163,684 + +0.0
163,684 + -0.9
163,684 + +0.0
163,684 + +0.0
163,684 + +0.0
163,685 - -2.1
163,685 - +0.0
163,685 - -2.0
163,685 - +0.0
163,685 - +0.0
163,685 - -2.3
163,685 - +0.0
163,685 - +0.0
163,687 - -1.7
163,717 + +0.0
163,718 - -1.9
163,730 + +0.0
163,730 + +0.0
163,730 + +0.0
163,731 - -1.3
163,731 - +0.0
163,776 - -1.0
163,776 - -1.0
163,827 + Rru_A0140 0.15 -1.0
163,827 + Rru_A0140 0.15 +0.0
163,827 + Rru_A0140 0.15 +0.0
163,827 + Rru_A0140 0.15 +0.0
163,827 + Rru_A0140 0.15 +0.0
163,827 + Rru_A0140 0.15 -0.3
163,827 + Rru_A0140 0.15 +0.0
163,827 + Rru_A0140 0.15 +0.5
163,828 - Rru_A0140 0.15 -2.3
163,828 - Rru_A0140 0.15 -2.4
163,828 - Rru_A0140 0.15 +0.0
163,828 - Rru_A0140 0.15 -2.9
163,828 - Rru_A0140 0.15 -1.0
163,829 + Rru_A0140 0.16 -3.0
163,830 - Rru_A0140 0.16 +0.0
163,830 - Rru_A0140 0.16 +0.0
163,830 - Rru_A0140 0.16 -1.0
163,830 - Rru_A0140 0.16 -1.4
163,830 - Rru_A0140 0.16 -1.8
163,868 + Rru_A0140 0.21 -1.6
163,868 + Rru_A0140 0.21 +0.0
163,868 + Rru_A0140 0.21 +0.0
163,869 - Rru_A0140 0.21 +0.0
163,869 - Rru_A0140 0.21 -0.4
163,964 + Rru_A0140 0.33 +0.0
163,964 + Rru_A0140 0.33 +0.0
163,964 + Rru_A0140 0.33 -1.0
163,964 + Rru_A0140 0.33 +0.0
163,964 + Rru_A0140 0.33 +0.0
163,965 - Rru_A0140 0.33 +0.0
163,965 - Rru_A0140 0.33 +0.0
163,965 - Rru_A0140 0.33 -2.0
163,965 - Rru_A0140 0.33 -1.0
163,965 - Rru_A0140 0.33 +0.0
163,967 - Rru_A0140 0.33 -0.0
164,075 + Rru_A0140 0.47 -1.7
164,076 - Rru_A0140 0.48 +0.0
164,115 + Rru_A0140 0.53 +0.0
164,116 - Rru_A0140 0.53 +0.0
164,116 - Rru_A0140 0.53 +0.0
164,116 - Rru_A0140 0.53 +0.0
164,118 + Rru_A0140 0.53 -2.0
164,118 + Rru_A0140 0.53 -1.1
164,118 + Rru_A0140 0.53 +0.0
164,119 - Rru_A0140 0.53 +0.0
164,119 - Rru_A0140 0.53 +0.0
164,188 + Rru_A0140 0.62 +0.0
164,189 - Rru_A0140 0.62 -1.9
164,305 - Rru_A0140 0.77 +0.0
164,305 - Rru_A0140 0.77 +0.0
164,402 + Rru_A0140 0.90 -1.9
164,403 - +0.0
164,403 - -1.0
164,465 + +0.0
164,465 + +0.0
164,465 + +0.0
164,465 + +0.0
164,465 + +0.0
164,465 + +0.0
164,466 - -3.0
164,466 - -0.7
164,555 + +0.0
164,663 + Rru_A0141 0.15 +0.0
164,663 + Rru_A0141 0.15 +0.0
164,664 - Rru_A0141 0.15 +0.0
164,682 - Rru_A0141 0.17 -0.7
164,682 - Rru_A0141 0.17 -2.7
164,736 - Rru_A0141 0.23 +0.0
164,736 - Rru_A0141 0.23 +0.0
164,834 + Rru_A0141 0.33 +0.0
164,834 + Rru_A0141 0.33 +0.0
164,834 + Rru_A0141 0.33 +0.0
164,835 - Rru_A0141 0.33 +0.0
164,835 - Rru_A0141 0.33 -1.6
164,835 - Rru_A0141 0.33 -1.0
164,872 + Rru_A0141 0.37 -3.0
164,916 - Rru_A0141 0.41 +0.0
164,922 + Rru_A0141 0.42 +0.0
165,182 - Rru_A0141 0.68 -2.7
165,495 + +0.0
165,495 + +0.0
165,495 + +0.0
165,495 + -1.0
165,496 - -3.1
165,496 - +0.0
165,538 + -2.3
165,538 + -0.4
165,539 - -1.1
165,605 - +0.0
165,634 + +0.0
165,634 + -1.9
165,634 + +0.0
165,634 + -2.1
165,635 - +0.0
165,946 + Rru_A0142 0.13 +0.0
165,946 + Rru_A0142 0.13 +0.0
165,946 + Rru_A0142 0.13 +0.0
165,947 - Rru_A0142 0.13 +0.0
165,947 - Rru_A0142 0.13 +0.0
166,106 + Rru_A0142 0.30 +0.0
166,107 - Rru_A0142 0.30 +0.0
166,318 + Rru_A0142 0.52 +0.0
166,319 - Rru_A0142 0.52 -1.0
166,319 - Rru_A0142 0.52 +0.0
166,378 + Rru_A0142 0.58 -2.0
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 -1.5
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 +0.0
166,378 + Rru_A0142 0.58 -2.6
166,378 + Rru_A0142 0.58 -2.1
166,379 - Rru_A0142 0.58 +0.1
166,379 - Rru_A0142 0.58 -2.8
166,379 - Rru_A0142 0.58 +0.2
166,379 - Rru_A0142 0.58 -2.3
166,379 - Rru_A0142 0.58 +0.0
166,471 + Rru_A0142 0.68 -1.1
166,471 + Rru_A0142 0.68 -1.5
166,471 + Rru_A0142 0.68 +0.0
166,471 + Rru_A0142 0.68 +0.0
166,471 + Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 -1.9
166,472 - Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 +0.0
166,472 - Rru_A0142 0.68 +0.0

Or see this region's nucleotide sequence