Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0115 and Rru_A0116 overlap by 4 nucleotides Rru_A0116 and Rru_A0117 overlap by 4 nucleotides Rru_A0117 and Rru_A0118 overlap by 10 nucleotides
Rru_A0115: Rru_A0115 - hypothetical protein (NCBI), at 134,884 to 136,362
_A0115
Rru_A0116: Rru_A0116 - hypothetical protein (NCBI), at 136,359 to 137,330
_A0116
Rru_A0117: Rru_A0117 - ABC transporter component (NCBI), at 137,327 to 138,064
_A0117
Rru_A0118: Rru_A0118 - type II secretion system protein E (NCBI), at 138,055 to 139,101
_A0118
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 135.556 kb on + strand, within Rru_A0115 at 135.556 kb on + strand, within Rru_A0115 at 135.556 kb on + strand, within Rru_A0115 at 135.557 kb on - strand, within Rru_A0115 at 135.557 kb on - strand, within Rru_A0115 at 135.785 kb on + strand, within Rru_A0115 at 135.785 kb on + strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 136.703 kb on + strand, within Rru_A0116 at 136.703 kb on + strand, within Rru_A0116 at 136.704 kb on - strand, within Rru_A0116 at 137.167 kb on - strand, within Rru_A0116 at 137.167 kb on - strand, within Rru_A0116 at 137.292 kb on + strand at 137.293 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand at 137.327 kb on - strand at 137.380 kb on - strand at 137.579 kb on + strand, within Rru_A0117 at 137.579 kb on + strand, within Rru_A0117 at 137.579 kb on + strand, within Rru_A0117
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 135,556 + Rru_A0115 0.45 +0.0 135,556 + Rru_A0115 0.45 +0.0 135,556 + Rru_A0115 0.45 +0.0 135,557 - Rru_A0115 0.46 +0.0 135,557 - Rru_A0115 0.46 +0.0 135,785 + Rru_A0115 0.61 +0.0 135,785 + Rru_A0115 0.61 +0.0 135,786 - Rru_A0115 0.61 -0.3 135,786 - Rru_A0115 0.61 -1.4 135,786 - Rru_A0115 0.61 -1.2 136,703 + Rru_A0116 0.35 -2.4 136,703 + Rru_A0116 0.35 +0.8 136,704 - Rru_A0116 0.35 +0.0 137,167 - Rru_A0116 0.83 -1.0 137,167 - Rru_A0116 0.83 -1.6 137,292 + +0.0 137,293 - +0.0 137,327 - +0.0 137,327 - +0.0 137,327 - +0.0 137,380 - +0.0 137,579 + Rru_A0117 0.34 +0.0 137,579 + Rru_A0117 0.34 -3.5 137,579 + Rru_A0117 0.34 +0.0
Or see this region's nucleotide sequence