Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0081 and Rru_A0082 are separated by 788 nucleotides Rru_A0082 and Rru_A0083 are separated by 183 nucleotides
Rru_A0081: Rru_A0081 - chemotaxis sensory transducer (NCBI), at 93,164 to 94,252
_A0081
Rru_A0082: Rru_A0082 - chemotaxis sensory transducer (NCBI), at 95,041 to 96,120
_A0082
Rru_A0083: Rru_A0083 - nuclease, SNase-like (NCBI), at 96,304 to 97,128
_A0083
Position (kb) 95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 94.091 kb on + strand, within Rru_A0081 at 94.273 kb on - strand at 94.414 kb on + strand at 94.415 kb on - strand at 94.480 kb on - strand at 94.576 kb on + strand at 94.687 kb on + strand at 94.687 kb on + strand at 94.687 kb on + strand at 94.688 kb on - strand at 94.688 kb on - strand at 94.688 kb on - strand at 94.886 kb on + strand at 94.886 kb on + strand at 94.886 kb on + strand at 94.887 kb on - strand at 94.909 kb on + strand at 94.909 kb on + strand at 94.909 kb on + strand at 94.909 kb on + strand at 94.910 kb on - strand at 94.910 kb on - strand at 95.042 kb on + strand at 95.055 kb on - strand at 95.072 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.090 kb on + strand at 95.091 kb on - strand at 95.091 kb on - strand at 95.091 kb on - strand at 95.091 kb on - strand at 95.091 kb on - strand at 95.099 kb on + strand at 95.100 kb on - strand at 95.347 kb on + strand, within Rru_A0082 at 95.347 kb on + strand, within Rru_A0082 at 95.348 kb on - strand, within Rru_A0082 at 95.393 kb on + strand, within Rru_A0082 at 95.394 kb on - strand, within Rru_A0082 at 95.394 kb on - strand, within Rru_A0082 at 95.450 kb on + strand, within Rru_A0082 at 95.451 kb on - strand, within Rru_A0082 at 95.451 kb on - strand, within Rru_A0082 at 95.451 kb on - strand, within Rru_A0082 at 95.589 kb on - strand, within Rru_A0082 at 95.595 kb on + strand, within Rru_A0082 at 95.596 kb on - strand, within Rru_A0082 at 95.597 kb on + strand, within Rru_A0082 at 95.597 kb on + strand, within Rru_A0082 at 95.597 kb on + strand, within Rru_A0082 at 95.597 kb on + strand, within Rru_A0082 at 95.597 kb on + strand, within Rru_A0082 at 95.597 kb on + strand, within Rru_A0082 at 95.597 kb on + strand, within Rru_A0082 at 95.598 kb on - strand, within Rru_A0082 at 95.598 kb on - strand, within Rru_A0082 at 95.598 kb on - strand, within Rru_A0082 at 95.662 kb on + strand, within Rru_A0082 at 95.663 kb on - strand, within Rru_A0082 at 95.663 kb on - strand, within Rru_A0082 at 96.229 kb on + strand at 96.230 kb on - strand at 96.245 kb on + strand at 96.245 kb on + strand at 96.245 kb on + strand at 96.246 kb on - strand at 96.246 kb on - strand at 96.555 kb on + strand, within Rru_A0083 at 96.555 kb on + strand, within Rru_A0083 at 96.555 kb on + strand, within Rru_A0083 at 96.556 kb on - strand, within Rru_A0083 at 96.556 kb on - strand, within Rru_A0083 at 96.595 kb on + strand, within Rru_A0083 at 96.596 kb on - strand, within Rru_A0083 at 97.115 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 94,091 + Rru_A0081 0.85 +0.0 94,273 - +0.0 94,414 + +0.0 94,415 - +0.0 94,480 - +0.0 94,576 + +0.0 94,687 + +0.0 94,687 + +0.0 94,687 + -1.0 94,688 - +0.0 94,688 - -1.4 94,688 - +0.0 94,886 + +0.0 94,886 + -1.0 94,886 + +0.0 94,887 - -2.2 94,909 + +0.0 94,909 + +0.0 94,909 + +0.0 94,909 + +0.0 94,910 - +0.0 94,910 - -1.9 95,042 + +0.0 95,055 - -1.6 95,072 + -1.7 95,090 + +0.0 95,090 + +0.0 95,090 + -2.5 95,090 + +0.0 95,090 + +0.0 95,090 + +0.0 95,090 + +0.0 95,090 + +0.0 95,090 + +0.0 95,090 + +0.0 95,091 - -0.8 95,091 - +0.0 95,091 - +0.0 95,091 - +0.4 95,091 - +0.0 95,099 + +0.0 95,100 - +0.0 95,347 + Rru_A0082 0.28 -2.5 95,347 + Rru_A0082 0.28 +0.0 95,348 - Rru_A0082 0.28 +0.0 95,393 + Rru_A0082 0.33 +0.4 95,394 - Rru_A0082 0.33 -3.6 95,394 - Rru_A0082 0.33 +0.0 95,450 + Rru_A0082 0.38 -2.3 95,451 - Rru_A0082 0.38 -1.1 95,451 - Rru_A0082 0.38 -0.2 95,451 - Rru_A0082 0.38 +0.0 95,589 - Rru_A0082 0.51 -0.5 95,595 + Rru_A0082 0.51 +0.0 95,596 - Rru_A0082 0.51 -2.8 95,597 + Rru_A0082 0.51 -3.5 95,597 + Rru_A0082 0.51 +0.0 95,597 + Rru_A0082 0.51 -0.1 95,597 + Rru_A0082 0.51 +0.0 95,597 + Rru_A0082 0.51 +0.0 95,597 + Rru_A0082 0.51 +0.8 95,597 + Rru_A0082 0.51 +0.0 95,598 - Rru_A0082 0.52 +0.0 95,598 - Rru_A0082 0.52 -0.4 95,598 - Rru_A0082 0.52 +0.0 95,662 + Rru_A0082 0.57 -1.2 95,663 - Rru_A0082 0.58 -2.6 95,663 - Rru_A0082 0.58 +0.0 96,229 + -3.0 96,230 - +0.0 96,245 + +0.0 96,245 + -1.0 96,245 + +0.0 96,246 - -1.0 96,246 - +0.0 96,555 + Rru_A0083 0.30 +0.0 96,555 + Rru_A0083 0.30 +0.0 96,555 + Rru_A0083 0.30 +0.0 96,556 - Rru_A0083 0.31 -2.0 96,556 - Rru_A0083 0.31 -1.4 96,595 + Rru_A0083 0.35 +0.0 96,596 - Rru_A0083 0.35 +0.0 97,115 - +0.0
Or see this region's nucleotide sequence