Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0078 and Rru_A0079 are separated by 295 nucleotides Rru_A0079 and Rru_A0080 are separated by 84 nucleotides Rru_A0080 and Rru_A0081 are separated by 283 nucleotides
Rru_A0078: Rru_A0078 - hypothetical protein (NCBI), at 90,639 to 90,914
_A0078
Rru_A0079: Rru_A0079 - Transcriptional Regulator, CarD family (NCBI), at 91,210 to 91,707
_A0079
Rru_A0080: Rru_A0080 - chemotaxis sensory transducer (NCBI), at 91,792 to 92,880
_A0080
Rru_A0081: Rru_A0081 - chemotaxis sensory transducer (NCBI), at 93,164 to 94,252
_A0081
Position (kb) 91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 90.933 kb on + strand at 90.966 kb on + strand at 90.968 kb on + strand at 90.968 kb on + strand at 91.080 kb on + strand at 91.173 kb on + strand at 91.173 kb on + strand at 91.777 kb on + strand at 91.777 kb on + strand at 91.778 kb on - strand at 91.778 kb on - strand at 91.823 kb on + strand at 91.841 kb on + strand at 91.841 kb on + strand at 91.841 kb on + strand at 91.841 kb on + strand at 91.841 kb on + strand at 91.842 kb on - strand at 91.851 kb on - strand at 91.945 kb on - strand, within Rru_A0080 at 91.945 kb on - strand, within Rru_A0080 at 91.956 kb on + strand, within Rru_A0080 at 91.957 kb on - strand, within Rru_A0080 at 92.144 kb on + strand, within Rru_A0080 at 92.144 kb on + strand, within Rru_A0080 at 92.144 kb on + strand, within Rru_A0080 at 92.144 kb on + strand, within Rru_A0080 at 92.145 kb on - strand, within Rru_A0080 at 92.145 kb on - strand, within Rru_A0080 at 92.202 kb on - strand, within Rru_A0080 at 92.339 kb on + strand, within Rru_A0080 at 92.340 kb on - strand, within Rru_A0080 at 92.346 kb on + strand, within Rru_A0080 at 92.347 kb on - strand, within Rru_A0080 at 92.348 kb on + strand, within Rru_A0080 at 92.348 kb on + strand, within Rru_A0080 at 92.349 kb on - strand, within Rru_A0080 at 92.413 kb on + strand, within Rru_A0080 at 92.414 kb on - strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.471 kb on + strand, within Rru_A0080 at 92.472 kb on - strand, within Rru_A0080 at 92.596 kb on + strand, within Rru_A0080 at 92.597 kb on - strand, within Rru_A0080 at 92.900 kb on + strand at 92.901 kb on - strand at 92.967 kb on + strand at 92.967 kb on + strand at 93.043 kb on + strand at 93.149 kb on + strand at 93.150 kb on - strand at 93.196 kb on - strand at 93.213 kb on + strand at 93.213 kb on + strand at 93.270 kb on + strand at 93.270 kb on + strand at 93.273 kb on + strand, within Rru_A0081 at 93.274 kb on - strand, within Rru_A0081 at 93.328 kb on + strand, within Rru_A0081 at 93.328 kb on + strand, within Rru_A0081 at 93.516 kb on + strand, within Rru_A0081 at 93.516 kb on + strand, within Rru_A0081 at 93.516 kb on + strand, within Rru_A0081 at 93.517 kb on - strand, within Rru_A0081 at 93.543 kb on - strand, within Rru_A0081 at 93.573 kb on + strand, within Rru_A0081 at 93.573 kb on + strand, within Rru_A0081 at 93.573 kb on + strand, within Rru_A0081 at 93.573 kb on + strand, within Rru_A0081 at 93.574 kb on - strand, within Rru_A0081 at 93.711 kb on + strand, within Rru_A0081 at 93.711 kb on + strand, within Rru_A0081 at 93.712 kb on - strand, within Rru_A0081 at 93.712 kb on - strand, within Rru_A0081 at 93.712 kb on - strand, within Rru_A0081 at 93.712 kb on - strand, within Rru_A0081 at 93.719 kb on - strand, within Rru_A0081 at 93.719 kb on - strand, within Rru_A0081 at 93.720 kb on + strand, within Rru_A0081 at 93.721 kb on - strand, within Rru_A0081 at 93.721 kb on - strand, within Rru_A0081
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 90,933 + -1.9 90,966 + +0.0 90,968 + +0.0 90,968 + +0.0 91,080 + +0.0 91,173 + -2.1 91,173 + -1.0 91,777 + +0.0 91,777 + -2.4 91,778 - -2.5 91,778 - +0.0 91,823 + +0.0 91,841 + +0.0 91,841 + +0.0 91,841 + +0.0 91,841 + -2.0 91,841 + +0.0 91,842 - +0.0 91,851 - +0.0 91,945 - Rru_A0080 0.14 -0.9 91,945 - Rru_A0080 0.14 +0.0 91,956 + Rru_A0080 0.15 +0.0 91,957 - Rru_A0080 0.15 +0.0 92,144 + Rru_A0080 0.32 -1.5 92,144 + Rru_A0080 0.32 +0.0 92,144 + Rru_A0080 0.32 -1.2 92,144 + Rru_A0080 0.32 -0.4 92,145 - Rru_A0080 0.32 -1.7 92,145 - Rru_A0080 0.32 +0.0 92,202 - Rru_A0080 0.38 -2.0 92,339 + Rru_A0080 0.50 +0.0 92,340 - Rru_A0080 0.50 -2.0 92,346 + Rru_A0080 0.51 +0.0 92,347 - Rru_A0080 0.51 +0.0 92,348 + Rru_A0080 0.51 +0.0 92,348 + Rru_A0080 0.51 -1.0 92,349 - Rru_A0080 0.51 +0.0 92,413 + Rru_A0080 0.57 -0.6 92,414 - Rru_A0080 0.57 +0.0 92,471 + Rru_A0080 0.62 +0.0 92,471 + Rru_A0080 0.62 -1.3 92,471 + Rru_A0080 0.62 +0.0 92,471 + Rru_A0080 0.62 -3.2 92,471 + Rru_A0080 0.62 +0.0 92,471 + Rru_A0080 0.62 -1.9 92,472 - Rru_A0080 0.62 -1.0 92,596 + Rru_A0080 0.74 -2.6 92,597 - Rru_A0080 0.74 -0.6 92,900 + +0.0 92,901 - +0.0 92,967 + +0.0 92,967 + +0.0 93,043 + -2.3 93,149 + +0.0 93,150 - +0.0 93,196 - -2.2 93,213 + +0.0 93,213 + +0.0 93,270 + -1.4 93,270 + +0.0 93,273 + Rru_A0081 0.10 -1.0 93,274 - Rru_A0081 0.10 +0.0 93,328 + Rru_A0081 0.15 -0.8 93,328 + Rru_A0081 0.15 -2.7 93,516 + Rru_A0081 0.32 +0.0 93,516 + Rru_A0081 0.32 +0.0 93,516 + Rru_A0081 0.32 +0.0 93,517 - Rru_A0081 0.32 +0.0 93,543 - Rru_A0081 0.35 +0.0 93,573 + Rru_A0081 0.38 -1.0 93,573 + Rru_A0081 0.38 +0.0 93,573 + Rru_A0081 0.38 +0.0 93,573 + Rru_A0081 0.38 +0.0 93,574 - Rru_A0081 0.38 +0.0 93,711 + Rru_A0081 0.50 +0.0 93,711 + Rru_A0081 0.50 +1.2 93,712 - Rru_A0081 0.50 +0.1 93,712 - Rru_A0081 0.50 +0.0 93,712 - Rru_A0081 0.50 +0.0 93,712 - Rru_A0081 0.50 +0.0 93,719 - Rru_A0081 0.51 +0.0 93,719 - Rru_A0081 0.51 -1.4 93,720 + Rru_A0081 0.51 +0.3 93,721 - Rru_A0081 0.51 -1.2 93,721 - Rru_A0081 0.51 +0.0
Or see this region's nucleotide sequence