Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0068

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0066 and Rru_A0067 are separated by 2 nucleotidesRru_A0067 and Rru_A0068 overlap by 17 nucleotidesRru_A0068 and Rru_A0069 overlap by 4 nucleotides Rru_A0066: Rru_A0066 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 76,073 to 78,394 _A0066 Rru_A0067: Rru_A0067 - Protein of unknown function DUF123 (NCBI), at 78,397 to 78,834 _A0067 Rru_A0068: Rru_A0068 - Alpha/beta hydrolase fold (NCBI), at 78,818 to 79,945 _A0068 Rru_A0069: Rru_A0069 - ABC transporter component (NCBI), at 79,942 to 80,952 _A0069 Position (kb) 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.831 kb on + strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 77.832 kb on - strand, within Rru_A0066at 78.092 kb on + strand, within Rru_A0066at 78.092 kb on + strand, within Rru_A0066at 78.092 kb on + strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.093 kb on - strand, within Rru_A0066at 78.240 kb on - strandat 78.240 kb on - strandat 78.455 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.530 kb on - strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.535 kb on + strand, within Rru_A0067at 78.536 kb on - strand, within Rru_A0067at 78.536 kb on - strand, within Rru_A0067at 78.536 kb on - strand, within Rru_A0067at 78.885 kb on + strandat 79.006 kb on + strand, within Rru_A0068at 79.158 kb on + strand, within Rru_A0068at 79.158 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.200 kb on + strand, within Rru_A0068at 79.201 kb on - strand, within Rru_A0068at 79.284 kb on + strand, within Rru_A0068at 79.285 kb on - strand, within Rru_A0068at 79.285 kb on - strand, within Rru_A0068at 79.311 kb on + strand, within Rru_A0068at 79.383 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.518 kb on + strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.519 kb on - strand, within Rru_A0068at 79.641 kb on + strand, within Rru_A0068at 79.641 kb on + strand, within Rru_A0068at 79.642 kb on - strand, within Rru_A0068at 80.093 kb on + strand, within Rru_A0069at 80.093 kb on + strand, within Rru_A0069at 80.093 kb on + strand, within Rru_A0069at 80.093 kb on + strand, within Rru_A0069at 80.093 kb on + strand, within Rru_A0069at 80.093 kb on + strand, within Rru_A0069at 80.094 kb on - strand, within Rru_A0069at 80.094 kb on - strand, within Rru_A0069at 80.111 kb on + strand, within Rru_A0069at 80.112 kb on - strand, within Rru_A0069at 80.112 kb on - strand, within Rru_A0069at 80.112 kb on - strand, within Rru_A0069at 80.301 kb on - strand, within Rru_A0069at 80.301 kb on - strand, within Rru_A0069at 80.351 kb on + strand, within Rru_A0069at 80.352 kb on - strand, within Rru_A0069at 80.352 kb on - strand, within Rru_A0069at 80.352 kb on - strand, within Rru_A0069at 80.352 kb on - strand, within Rru_A0069at 80.486 kb on + strand, within Rru_A0069at 80.487 kb on - strand, within Rru_A0069at 80.561 kb on + strand, within Rru_A0069at 80.561 kb on + strand, within Rru_A0069at 80.561 kb on + strand, within Rru_A0069at 80.561 kb on + strand, within Rru_A0069at 80.561 kb on + strand, within Rru_A0069at 80.562 kb on - strand, within Rru_A0069at 80.562 kb on - strand, within Rru_A0069at 80.562 kb on - strand, within Rru_A0069at 80.562 kb on - strand, within Rru_A0069at 80.562 kb on - strand, within Rru_A0069at 80.562 kb on - strand, within Rru_A0069at 80.837 kb on + strand, within Rru_A0069

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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77,831 + Rru_A0066 0.76 -1.6
77,831 + Rru_A0066 0.76 -1.0
77,831 + Rru_A0066 0.76 -0.9
77,831 + Rru_A0066 0.76 +0.0
77,831 + Rru_A0066 0.76 +0.0
77,832 - Rru_A0066 0.76 +0.0
77,832 - Rru_A0066 0.76 +0.0
77,832 - Rru_A0066 0.76 +0.0
77,832 - Rru_A0066 0.76 +0.0
78,092 + Rru_A0066 0.87 -2.6
78,092 + Rru_A0066 0.87 +0.0
78,092 + Rru_A0066 0.87 -2.0
78,093 - Rru_A0066 0.87 +0.0
78,093 - Rru_A0066 0.87 -1.0
78,093 - Rru_A0066 0.87 +0.0
78,093 - Rru_A0066 0.87 +0.0
78,240 - +0.0
78,240 - -0.8
78,455 - Rru_A0067 0.13 -3.1
78,530 - Rru_A0067 0.30 -0.1
78,530 - Rru_A0067 0.30 -2.5
78,530 - Rru_A0067 0.30 +0.0
78,530 - Rru_A0067 0.30 +0.0
78,535 + Rru_A0067 0.32 +0.0
78,535 + Rru_A0067 0.32 -1.9
78,535 + Rru_A0067 0.32 -2.5
78,535 + Rru_A0067 0.32 +0.0
78,535 + Rru_A0067 0.32 +0.0
78,536 - Rru_A0067 0.32 +0.0
78,536 - Rru_A0067 0.32 +0.0
78,536 - Rru_A0067 0.32 +0.0
78,885 + -1.0
79,006 + Rru_A0068 0.17 -1.0
79,158 + Rru_A0068 0.30 +0.0
79,158 + Rru_A0068 0.30 -1.0
79,200 + Rru_A0068 0.34 -0.9
79,200 + Rru_A0068 0.34 -2.1
79,200 + Rru_A0068 0.34 +0.0
79,200 + Rru_A0068 0.34 +0.0
79,201 - Rru_A0068 0.34 -1.2
79,284 + Rru_A0068 0.41 -0.2
79,285 - Rru_A0068 0.41 -1.5
79,285 - Rru_A0068 0.41 +0.0
79,311 + Rru_A0068 0.44 -2.2
79,383 + Rru_A0068 0.50 -0.8
79,518 + Rru_A0068 0.62 +0.0
79,518 + Rru_A0068 0.62 +0.0
79,518 + Rru_A0068 0.62 +0.0
79,518 + Rru_A0068 0.62 -1.5
79,518 + Rru_A0068 0.62 -2.4
79,518 + Rru_A0068 0.62 -0.9
79,518 + Rru_A0068 0.62 +0.0
79,518 + Rru_A0068 0.62 +0.0
79,518 + Rru_A0068 0.62 +0.0
79,519 - Rru_A0068 0.62 +0.0
79,519 - Rru_A0068 0.62 +0.0
79,519 - Rru_A0068 0.62 -1.7
79,519 - Rru_A0068 0.62 +0.0
79,519 - Rru_A0068 0.62 -1.0
79,519 - Rru_A0068 0.62 -0.4
79,519 - Rru_A0068 0.62 +0.0
79,641 + Rru_A0068 0.73 -1.2
79,641 + Rru_A0068 0.73 -0.7
79,642 - Rru_A0068 0.73 +0.0
80,093 + Rru_A0069 0.15 -1.6
80,093 + Rru_A0069 0.15 +0.0
80,093 + Rru_A0069 0.15 +0.0
80,093 + Rru_A0069 0.15 -1.3
80,093 + Rru_A0069 0.15 +0.0
80,093 + Rru_A0069 0.15 +0.0
80,094 - Rru_A0069 0.15 -1.6
80,094 - Rru_A0069 0.15 -1.0
80,111 + Rru_A0069 0.17 +0.0
80,112 - Rru_A0069 0.17 +0.0
80,112 - Rru_A0069 0.17 -0.4
80,112 - Rru_A0069 0.17 +0.0
80,301 - Rru_A0069 0.36 -1.7
80,301 - Rru_A0069 0.36 +0.0
80,351 + Rru_A0069 0.40 +0.0
80,352 - Rru_A0069 0.41 +0.0
80,352 - Rru_A0069 0.41 -1.4
80,352 - Rru_A0069 0.41 +0.0
80,352 - Rru_A0069 0.41 -1.3
80,486 + Rru_A0069 0.54 +0.0
80,487 - Rru_A0069 0.54 -2.0
80,561 + Rru_A0069 0.61 +0.0
80,561 + Rru_A0069 0.61 -1.0
80,561 + Rru_A0069 0.61 +0.0
80,561 + Rru_A0069 0.61 -1.5
80,561 + Rru_A0069 0.61 -1.0
80,562 - Rru_A0069 0.61 +0.0
80,562 - Rru_A0069 0.61 +0.0
80,562 - Rru_A0069 0.61 +0.0
80,562 - Rru_A0069 0.61 +0.0
80,562 - Rru_A0069 0.61 +0.0
80,562 - Rru_A0069 0.61 -1.6
80,837 + Rru_A0069 0.89 -1.4

Or see this region's nucleotide sequence