Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0046

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0045 and Rru_A0046 are separated by 13 nucleotidesRru_A0046 and Rru_A0047 are separated by 86 nucleotides Rru_A0045: Rru_A0045 - Beta-ketoacyl synthase (NCBI), at 46,946 to 48,160 _A0045 Rru_A0046: Rru_A0046 - Protein of unknown function DUF523 (NCBI), at 48,174 to 48,683 _A0046 Rru_A0047: Rru_A0047 - ABC transporter component (NCBI), at 48,770 to 50,377 _A0047 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1at 48.241 kb on - strand, within Rru_A0046at 48.242 kb on + strand, within Rru_A0046at 48.243 kb on - strand, within Rru_A0046at 48.447 kb on + strand, within Rru_A0046at 48.447 kb on + strand, within Rru_A0046at 48.447 kb on + strand, within Rru_A0046at 48.448 kb on - strand, within Rru_A0046at 48.448 kb on - strand, within Rru_A0046at 48.549 kb on + strand, within Rru_A0046at 48.549 kb on + strand, within Rru_A0046at 48.549 kb on + strand, within Rru_A0046at 48.550 kb on - strand, within Rru_A0046at 48.550 kb on - strand, within Rru_A0046at 48.681 kb on + strandat 48.747 kb on + strandat 48.748 kb on - strandat 48.880 kb on - strandat 48.949 kb on + strand, within Rru_A0047at 48.949 kb on + strand, within Rru_A0047at 48.949 kb on + strand, within Rru_A0047at 48.950 kb on - strand, within Rru_A0047at 48.950 kb on - strand, within Rru_A0047at 48.950 kb on - strand, within Rru_A0047at 48.950 kb on - strand, within Rru_A0047at 48.950 kb on - strand, within Rru_A0047at 49.123 kb on + strand, within Rru_A0047at 49.124 kb on - strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.188 kb on + strand, within Rru_A0047at 49.189 kb on - strand, within Rru_A0047at 49.189 kb on - strand, within Rru_A0047at 49.305 kb on - strand, within Rru_A0047at 49.342 kb on - strand, within Rru_A0047at 49.352 kb on + strand, within Rru_A0047at 49.406 kb on - strand, within Rru_A0047at 49.428 kb on - strand, within Rru_A0047at 49.428 kb on - strand, within Rru_A0047

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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48,241 - Rru_A0046 0.13 +0.0
48,242 + Rru_A0046 0.13 -0.8
48,243 - Rru_A0046 0.14 +0.0
48,447 + Rru_A0046 0.54 +0.0
48,447 + Rru_A0046 0.54 +0.0
48,447 + Rru_A0046 0.54 -1.0
48,448 - Rru_A0046 0.54 +0.0
48,448 - Rru_A0046 0.54 +0.0
48,549 + Rru_A0046 0.74 +0.0
48,549 + Rru_A0046 0.74 +0.0
48,549 + Rru_A0046 0.74 +0.0
48,550 - Rru_A0046 0.74 +0.0
48,550 - Rru_A0046 0.74 +0.0
48,681 + +0.0
48,747 + +0.0
48,748 - +0.0
48,880 - +0.0
48,949 + Rru_A0047 0.11 +0.0
48,949 + Rru_A0047 0.11 +0.0
48,949 + Rru_A0047 0.11 +0.0
48,950 - Rru_A0047 0.11 +0.0
48,950 - Rru_A0047 0.11 +0.0
48,950 - Rru_A0047 0.11 -0.7
48,950 - Rru_A0047 0.11 +0.0
48,950 - Rru_A0047 0.11 +0.0
49,123 + Rru_A0047 0.22 +0.0
49,124 - Rru_A0047 0.22 +0.0
49,188 + Rru_A0047 0.26 +0.3
49,188 + Rru_A0047 0.26 +0.0
49,188 + Rru_A0047 0.26 +0.0
49,188 + Rru_A0047 0.26 +0.6
49,188 + Rru_A0047 0.26 +0.0
49,188 + Rru_A0047 0.26 +0.0
49,188 + Rru_A0047 0.26 +0.0
49,188 + Rru_A0047 0.26 +0.0
49,188 + Rru_A0047 0.26 +0.0
49,189 - Rru_A0047 0.26 -2.4
49,189 - Rru_A0047 0.26 +0.0
49,305 - Rru_A0047 0.33 -1.1
49,342 - Rru_A0047 0.36 +0.0
49,352 + Rru_A0047 0.36 -1.0
49,406 - Rru_A0047 0.40 +0.0
49,428 - Rru_A0047 0.41 +0.0
49,428 - Rru_A0047 0.41 -1.0

Or see this region's nucleotide sequence