Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0027 and Rru_A0028 are separated by 579 nucleotides Rru_A0028 and Rru_A0029 are separated by 20 nucleotides Rru_A0029 and Rru_A0030 are separated by 6 nucleotides
Rru_A0027: Rru_A0027 - Monofunctional biosynthetic peptidoglycan transglycosylase (NCBI), at 31,626 to 32,333
_A0027
Rru_A0028: Rru_A0028 - Beta-lactamase-like (NCBI), at 32,913 to 33,752
_A0028
Rru_A0029: Rru_A0029 - hypothetical protein (NCBI), at 33,773 to 34,099
_A0029
Rru_A0030: Rru_A0030 - hypothetical protein (NCBI), at 34,106 to 34,651
_A0030
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 31.932 kb on + strand, within Rru_A0027 at 31.933 kb on - strand, within Rru_A0027 at 31.933 kb on - strand, within Rru_A0027 at 31.952 kb on - strand, within Rru_A0027 at 32.040 kb on + strand, within Rru_A0027 at 32.041 kb on - strand, within Rru_A0027 at 32.041 kb on - strand, within Rru_A0027 at 32.041 kb on - strand, within Rru_A0027 at 32.094 kb on + strand, within Rru_A0027 at 32.102 kb on + strand, within Rru_A0027 at 32.103 kb on - strand, within Rru_A0027 at 32.127 kb on + strand, within Rru_A0027 at 32.127 kb on + strand, within Rru_A0027 at 32.127 kb on + strand, within Rru_A0027 at 32.128 kb on - strand, within Rru_A0027 at 32.128 kb on - strand, within Rru_A0027 at 32.256 kb on + strand, within Rru_A0027 at 32.256 kb on + strand, within Rru_A0027 at 32.256 kb on + strand, within Rru_A0027 at 32.256 kb on + strand, within Rru_A0027 at 32.256 kb on + strand, within Rru_A0027 at 32.257 kb on - strand, within Rru_A0027 at 32.257 kb on - strand, within Rru_A0027 at 32.669 kb on - strand at 32.669 kb on - strand at 32.718 kb on + strand at 32.754 kb on - strand at 32.812 kb on - strand at 32.821 kb on + strand at 32.821 kb on + strand at 32.827 kb on + strand at 32.827 kb on + strand at 32.828 kb on - strand at 32.924 kb on - strand at 32.924 kb on - strand at 32.935 kb on + strand at 32.936 kb on - strand at 32.936 kb on - strand at 32.936 kb on - strand at 33.138 kb on + strand, within Rru_A0028 at 33.139 kb on - strand, within Rru_A0028 at 33.185 kb on + strand, within Rru_A0028 at 33.185 kb on + strand, within Rru_A0028 at 33.186 kb on - strand, within Rru_A0028 at 33.186 kb on - strand, within Rru_A0028 at 33.186 kb on - strand, within Rru_A0028 at 33.186 kb on - strand, within Rru_A0028 at 33.186 kb on - strand, within Rru_A0028 at 33.502 kb on - strand, within Rru_A0028 at 33.502 kb on - strand, within Rru_A0028 at 33.577 kb on + strand, within Rru_A0028 at 33.577 kb on + strand, within Rru_A0028 at 33.578 kb on - strand, within Rru_A0028 at 33.587 kb on + strand, within Rru_A0028 at 33.588 kb on - strand, within Rru_A0028 at 33.599 kb on + strand, within Rru_A0028 at 33.599 kb on + strand, within Rru_A0028 at 33.600 kb on - strand, within Rru_A0028 at 33.600 kb on - strand, within Rru_A0028 at 33.600 kb on - strand, within Rru_A0028 at 33.600 kb on - strand, within Rru_A0028 at 33.600 kb on - strand, within Rru_A0028 at 33.600 kb on - strand, within Rru_A0028 at 33.600 kb on - strand, within Rru_A0028 at 33.600 kb on - strand, within Rru_A0028 at 33.609 kb on + strand, within Rru_A0028 at 33.654 kb on - strand, within Rru_A0028 at 33.654 kb on - strand, within Rru_A0028 at 33.712 kb on - strand at 33.746 kb on + strand at 33.746 kb on + strand at 33.805 kb on - strand at 33.848 kb on + strand, within Rru_A0029 at 33.848 kb on + strand, within Rru_A0029 at 33.849 kb on - strand, within Rru_A0029 at 33.966 kb on + strand, within Rru_A0029 at 33.966 kb on + strand, within Rru_A0029 at 33.966 kb on + strand, within Rru_A0029 at 33.966 kb on + strand, within Rru_A0029 at 33.966 kb on + strand, within Rru_A0029 at 33.966 kb on + strand, within Rru_A0029 at 33.966 kb on + strand, within Rru_A0029 at 33.967 kb on - strand, within Rru_A0029 at 33.967 kb on - strand, within Rru_A0029 at 33.973 kb on + strand, within Rru_A0029 at 33.974 kb on - strand, within Rru_A0029 at 34.091 kb on - strand at 34.108 kb on - strand at 34.108 kb on - strand at 34.167 kb on + strand, within Rru_A0030 at 34.168 kb on - strand, within Rru_A0030 at 34.325 kb on + strand, within Rru_A0030 at 34.335 kb on + strand, within Rru_A0030 at 34.377 kb on + strand, within Rru_A0030 at 34.377 kb on + strand, within Rru_A0030 at 34.377 kb on + strand, within Rru_A0030 at 34.446 kb on + strand, within Rru_A0030 at 34.446 kb on + strand, within Rru_A0030 at 34.498 kb on - strand, within Rru_A0030 at 34.540 kb on + strand, within Rru_A0030 at 34.541 kb on - strand, within Rru_A0030 at 34.588 kb on - strand, within Rru_A0030 at 34.642 kb on + strand at 34.644 kb on + strand at 34.644 kb on + strand at 34.652 kb on + strand at 34.652 kb on + strand at 34.652 kb on + strand at 34.652 kb on + strand at 34.652 kb on + strand at 34.652 kb on + strand at 34.653 kb on - strand at 34.653 kb on - strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.737 kb on + strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.738 kb on - strand at 34.739 kb on + strand at 34.740 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 31,932 + Rru_A0027 0.43 -1.8 31,933 - Rru_A0027 0.43 +0.0 31,933 - Rru_A0027 0.43 +0.0 31,952 - Rru_A0027 0.46 -0.7 32,040 + Rru_A0027 0.58 -1.8 32,041 - Rru_A0027 0.59 +0.0 32,041 - Rru_A0027 0.59 +0.0 32,041 - Rru_A0027 0.59 +0.0 32,094 + Rru_A0027 0.66 +0.0 32,102 + Rru_A0027 0.67 +0.0 32,103 - Rru_A0027 0.67 +0.0 32,127 + Rru_A0027 0.71 -1.6 32,127 + Rru_A0027 0.71 +0.0 32,127 + Rru_A0027 0.71 -2.0 32,128 - Rru_A0027 0.71 +0.0 32,128 - Rru_A0027 0.71 +0.0 32,256 + Rru_A0027 0.89 +0.0 32,256 + Rru_A0027 0.89 +0.0 32,256 + Rru_A0027 0.89 -2.2 32,256 + Rru_A0027 0.89 +0.0 32,256 + Rru_A0027 0.89 +0.0 32,257 - Rru_A0027 0.89 +0.7 32,257 - Rru_A0027 0.89 +0.0 32,669 - +0.0 32,669 - +0.0 32,718 + +0.0 32,754 - +0.0 32,812 - -1.4 32,821 + +0.0 32,821 + +0.0 32,827 + -1.0 32,827 + -1.0 32,828 - -2.1 32,924 - +0.0 32,924 - -2.3 32,935 + -0.6 32,936 - +0.0 32,936 - +0.0 32,936 - -1.0 33,138 + Rru_A0028 0.27 +0.0 33,139 - Rru_A0028 0.27 +0.3 33,185 + Rru_A0028 0.32 +0.0 33,185 + Rru_A0028 0.32 -2.6 33,186 - Rru_A0028 0.33 -1.6 33,186 - Rru_A0028 0.33 +0.0 33,186 - Rru_A0028 0.33 +0.0 33,186 - Rru_A0028 0.33 -1.6 33,186 - Rru_A0028 0.33 -2.6 33,502 - Rru_A0028 0.70 +0.0 33,502 - Rru_A0028 0.70 -0.8 33,577 + Rru_A0028 0.79 +0.0 33,577 + Rru_A0028 0.79 -1.4 33,578 - Rru_A0028 0.79 +0.0 33,587 + Rru_A0028 0.80 +0.0 33,588 - Rru_A0028 0.80 +0.0 33,599 + Rru_A0028 0.82 +0.0 33,599 + Rru_A0028 0.82 -1.3 33,600 - Rru_A0028 0.82 -1.0 33,600 - Rru_A0028 0.82 +0.0 33,600 - Rru_A0028 0.82 +0.0 33,600 - Rru_A0028 0.82 +0.0 33,600 - Rru_A0028 0.82 +0.0 33,600 - Rru_A0028 0.82 +0.0 33,600 - Rru_A0028 0.82 -1.1 33,600 - Rru_A0028 0.82 +0.0 33,609 + Rru_A0028 0.83 +0.0 33,654 - Rru_A0028 0.88 +0.0 33,654 - Rru_A0028 0.88 +0.0 33,712 - +0.0 33,746 + -1.9 33,746 + +0.0 33,805 - +0.0 33,848 + Rru_A0029 0.23 -2.4 33,848 + Rru_A0029 0.23 +0.0 33,849 - Rru_A0029 0.23 +0.0 33,966 + Rru_A0029 0.59 -0.5 33,966 + Rru_A0029 0.59 +0.0 33,966 + Rru_A0029 0.59 -1.0 33,966 + Rru_A0029 0.59 -2.8 33,966 + Rru_A0029 0.59 +0.0 33,966 + Rru_A0029 0.59 +0.1 33,966 + Rru_A0029 0.59 +0.0 33,967 - Rru_A0029 0.59 +0.0 33,967 - Rru_A0029 0.59 +0.0 33,973 + Rru_A0029 0.61 +0.0 33,974 - Rru_A0029 0.61 -1.0 34,091 - -3.1 34,108 - -0.3 34,108 - +0.0 34,167 + Rru_A0030 0.11 +0.0 34,168 - Rru_A0030 0.11 -1.5 34,325 + Rru_A0030 0.40 +0.0 34,335 + Rru_A0030 0.42 +0.0 34,377 + Rru_A0030 0.50 -2.6 34,377 + Rru_A0030 0.50 +0.0 34,377 + Rru_A0030 0.50 +0.0 34,446 + Rru_A0030 0.62 +0.0 34,446 + Rru_A0030 0.62 +0.0 34,498 - Rru_A0030 0.72 +0.0 34,540 + Rru_A0030 0.79 -0.4 34,541 - Rru_A0030 0.80 +0.0 34,588 - Rru_A0030 0.88 +0.0 34,642 + +0.0 34,644 + +0.0 34,644 + -1.0 34,652 + +0.0 34,652 + -1.7 34,652 + +0.0 34,652 + -1.0 34,652 + +0.0 34,652 + +0.0 34,653 - +0.0 34,653 - +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + -1.0 34,737 + +0.0 34,737 + +0.0 34,737 + -1.0 34,737 + +0.0 34,737 + -1.6 34,737 + +0.0 34,737 + -2.6 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,737 + -1.3 34,737 + -1.4 34,737 + +0.0 34,737 + +0.0 34,737 + +0.0 34,738 - +0.0 34,738 - +0.0 34,738 - +0.0 34,738 - +0.0 34,738 - +0.0 34,738 - +0.0 34,738 - +0.0 34,738 - -1.0 34,738 - +0.0 34,738 - +0.0 34,738 - -2.0 34,738 - -2.5 34,739 + +0.0 34,740 - +0.0
Or see this region's nucleotide sequence