Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0026

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0024 and Rru_A0025 are separated by 122 nucleotidesRru_A0025 and Rru_A0026 are separated by 14 nucleotidesRru_A0026 and Rru_A0027 are separated by 6 nucleotides Rru_A0024: Rru_A0024 - peptidase (NCBI), at 28,454 to 29,599 _A0024 Rru_A0025: Rru_A0025 - hypothetical protein (NCBI), at 29,722 to 30,261 _A0025 Rru_A0026: Rru_A0026 - hypothetical protein (NCBI), at 30,276 to 31,619 _A0026 Rru_A0027: Rru_A0027 - Monofunctional biosynthetic peptidoglycan transglycosylase (NCBI), at 31,626 to 32,333 _A0027 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1at 29.393 kb on - strand, within Rru_A0024at 29.635 kb on + strandat 29.635 kb on + strandat 29.635 kb on + strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.636 kb on - strandat 29.640 kb on + strandat 29.641 kb on - strandat 29.779 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.110 kb on - strand, within Rru_A0025at 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.271 kb on + strandat 30.272 kb on - strandat 30.378 kb on + strandat 30.378 kb on + strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.379 kb on - strandat 30.640 kb on - strand, within Rru_A0026at 30.640 kb on - strand, within Rru_A0026at 30.640 kb on - strand, within Rru_A0026at 30.834 kb on + strand, within Rru_A0026at 30.834 kb on + strand, within Rru_A0026at 30.835 kb on - strand, within Rru_A0026at 30.891 kb on + strand, within Rru_A0026at 30.891 kb on + strand, within Rru_A0026at 30.891 kb on + strand, within Rru_A0026at 30.892 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.027 kb on - strand, within Rru_A0026at 31.335 kb on + strand, within Rru_A0026at 31.335 kb on + strand, within Rru_A0026at 31.336 kb on - strand, within Rru_A0026at 31.336 kb on - strand, within Rru_A0026at 31.446 kb on + strand, within Rru_A0026at 31.446 kb on + strand, within Rru_A0026at 31.446 kb on + strand, within Rru_A0026at 31.446 kb on + strand, within Rru_A0026at 31.446 kb on + strand, within Rru_A0026at 31.447 kb on - strand, within Rru_A0026at 31.447 kb on - strand, within Rru_A0026at 31.447 kb on - strand, within Rru_A0026at 31.515 kb on + strandat 31.516 kb on - strandat 31.618 kb on - strandat 31.843 kb on + strand, within Rru_A0027at 31.844 kb on - strand, within Rru_A0027at 31.901 kb on + strand, within Rru_A0027at 31.901 kb on + strand, within Rru_A0027at 31.932 kb on + strand, within Rru_A0027at 31.933 kb on - strand, within Rru_A0027at 31.933 kb on - strand, within Rru_A0027at 31.952 kb on - strand, within Rru_A0027at 32.040 kb on + strand, within Rru_A0027at 32.041 kb on - strand, within Rru_A0027at 32.041 kb on - strand, within Rru_A0027at 32.041 kb on - strand, within Rru_A0027at 32.094 kb on + strand, within Rru_A0027at 32.102 kb on + strand, within Rru_A0027at 32.103 kb on - strand, within Rru_A0027at 32.127 kb on + strand, within Rru_A0027at 32.127 kb on + strand, within Rru_A0027at 32.127 kb on + strand, within Rru_A0027at 32.128 kb on - strand, within Rru_A0027at 32.128 kb on - strand, within Rru_A0027at 32.256 kb on + strand, within Rru_A0027at 32.256 kb on + strand, within Rru_A0027at 32.256 kb on + strand, within Rru_A0027at 32.256 kb on + strand, within Rru_A0027at 32.256 kb on + strand, within Rru_A0027at 32.257 kb on - strand, within Rru_A0027at 32.257 kb on - strand, within Rru_A0027

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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29,393 - Rru_A0024 0.82 -2.0
29,635 + +0.0
29,635 + +0.0
29,635 + -1.3
29,636 - +0.0
29,636 - +0.0
29,636 - +0.0
29,636 - +0.0
29,636 - +0.0
29,640 + +0.0
29,641 - -1.0
29,779 - Rru_A0025 0.11 -1.0
30,110 - Rru_A0025 0.72 +0.0
30,110 - Rru_A0025 0.72 +0.0
30,110 - Rru_A0025 0.72 +0.0
30,110 - Rru_A0025 0.72 +0.0
30,110 - Rru_A0025 0.72 +0.0
30,110 - Rru_A0025 0.72 -2.7
30,271 + +0.0
30,271 + +0.0
30,271 + +0.0
30,271 + +0.0
30,271 + +0.0
30,272 - +0.0
30,378 + +0.0
30,378 + +0.1
30,379 - -0.5
30,379 - +0.0
30,379 - +0.0
30,379 - +0.0
30,379 - +0.0
30,379 - +0.0
30,640 - Rru_A0026 0.27 +0.0
30,640 - Rru_A0026 0.27 +0.0
30,640 - Rru_A0026 0.27 +0.0
30,834 + Rru_A0026 0.42 +0.0
30,834 + Rru_A0026 0.42 +0.0
30,835 - Rru_A0026 0.42 +0.0
30,891 + Rru_A0026 0.46 +0.0
30,891 + Rru_A0026 0.46 +0.0
30,891 + Rru_A0026 0.46 +0.0
30,892 - Rru_A0026 0.46 +0.0
31,027 - Rru_A0026 0.56 +0.0
31,027 - Rru_A0026 0.56 +0.0
31,027 - Rru_A0026 0.56 +0.8
31,027 - Rru_A0026 0.56 +0.0
31,027 - Rru_A0026 0.56 -1.4
31,027 - Rru_A0026 0.56 -1.0
31,335 + Rru_A0026 0.79 +0.0
31,335 + Rru_A0026 0.79 +0.0
31,336 - Rru_A0026 0.79 -0.7
31,336 - Rru_A0026 0.79 -2.4
31,446 + Rru_A0026 0.87 +0.0
31,446 + Rru_A0026 0.87 +0.0
31,446 + Rru_A0026 0.87 +0.0
31,446 + Rru_A0026 0.87 +0.0
31,446 + Rru_A0026 0.87 +0.0
31,447 - Rru_A0026 0.87 +0.0
31,447 - Rru_A0026 0.87 -1.0
31,447 - Rru_A0026 0.87 +0.0
31,515 + -2.3
31,516 - -2.6
31,618 - +0.0
31,843 + Rru_A0027 0.31 -2.3
31,844 - Rru_A0027 0.31 +0.0
31,901 + Rru_A0027 0.39 +0.0
31,901 + Rru_A0027 0.39 +0.0
31,932 + Rru_A0027 0.43 -1.8
31,933 - Rru_A0027 0.43 +0.0
31,933 - Rru_A0027 0.43 +0.0
31,952 - Rru_A0027 0.46 -0.7
32,040 + Rru_A0027 0.58 -1.8
32,041 - Rru_A0027 0.59 +0.0
32,041 - Rru_A0027 0.59 +0.0
32,041 - Rru_A0027 0.59 +0.0
32,094 + Rru_A0027 0.66 +0.0
32,102 + Rru_A0027 0.67 +0.0
32,103 - Rru_A0027 0.67 +0.0
32,127 + Rru_A0027 0.71 -1.6
32,127 + Rru_A0027 0.71 +0.0
32,127 + Rru_A0027 0.71 -2.0
32,128 - Rru_A0027 0.71 +0.0
32,128 - Rru_A0027 0.71 +0.0
32,256 + Rru_A0027 0.89 +0.0
32,256 + Rru_A0027 0.89 +0.0
32,256 + Rru_A0027 0.89 -2.2
32,256 + Rru_A0027 0.89 +0.0
32,256 + Rru_A0027 0.89 +0.0
32,257 - Rru_A0027 0.89 +0.7
32,257 - Rru_A0027 0.89 +0.0

Or see this region's nucleotide sequence