Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0036

Experiment: L-Malic Acid (C) with ammonium chloride; high light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic Acid (C) with ammonium chloride; high light
33,028	+		Rru_B0033	0.77	-2.2
33,029	-		Rru_B0033	0.77	-0.2
33,029	-		Rru_B0033	0.77	-0.2
33,029	-		Rru_B0033	0.77	-2.4
33,029	-		Rru_B0033	0.77	-0.2
33,029	-		Rru_B0033	0.77	-0.2
33,201	-				-0.2
33,247	+				-0.2
33,248	-				-0.2
33,271	+				-0.4
33,273	+				-0.2
33,275	+				-0.2
33,275	+				-0.2
33,275	+				-0.2
33,276	-				-0.2
33,276	-				-1.2
33,276	-				-0.2
33,278	+				-0.8
33,285	+				-2.1
33,286	-				-1.2
33,287	+				-0.0
33,288	-				-1.6
33,568	-				-1.2
33,672	+		Rru_B0035	0.36	-0.2
33,672	+		Rru_B0035	0.36	-1.2
33,672	+		Rru_B0035	0.36	-0.2
33,672	+		Rru_B0035	0.36	-0.2
33,673	-		Rru_B0035	0.37	-0.2
33,673	-		Rru_B0035	0.37	-1.2
33,674	+		Rru_B0035	0.37	-0.2
33,674	+		Rru_B0035	0.37	-0.2
33,674	+		Rru_B0035	0.37	-2.1
33,674	+		Rru_B0035	0.37	-0.2
33,674	+		Rru_B0035	0.37	-0.2
33,674	+		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	-0.2
33,675	-		Rru_B0035	0.37	+0.5
33,708	+		Rru_B0035	0.46	-0.2
33,708	+		Rru_B0035	0.46	-0.2
33,708	+		Rru_B0035	0.46	-1.7
33,709	-		Rru_B0035	0.46	-1.2
33,709	-		Rru_B0035	0.46	-1.2
33,709	-		Rru_B0035	0.46	-0.2
33,709	-		Rru_B0035	0.46	-0.2
33,714	+		Rru_B0035	0.47	-1.8
33,714	+		Rru_B0035	0.47	-1.4
33,714	+		Rru_B0035	0.47	-0.2
33,715	-		Rru_B0035	0.48	-0.3
33,715	-		Rru_B0035	0.48	-0.2
33,715	-		Rru_B0035	0.48	-0.2
33,715	-		Rru_B0035	0.48	-0.2
33,863	+		Rru_B0035	0.86	-1.5
33,863	+		Rru_B0035	0.86	-0.2
33,863	+		Rru_B0035	0.86	-0.2
33,863	+		Rru_B0035	0.86	-0.2
33,863	+		Rru_B0035	0.86	-0.2
33,864	-		Rru_B0035	0.86	-0.2
33,864	-		Rru_B0035	0.86	-0.2
33,864	-		Rru_B0035	0.86	+0.3
33,928	+				-1.2
33,928	+				-1.2
33,928	+				-0.2
33,929	-				-0.2
33,929	-				-1.8
33,930	+				-0.2
33,930	+				-0.2
33,930	+				-0.2
33,931	-				-1.6
33,931	-				-0.2
33,931	-				-0.2
34,001	+				-1.5
34,001	+				-0.5
34,001	+				-0.2
34,001	+				-0.2
34,001	+				-0.2
34,002	-				-0.2
34,002	-				+0.5
34,002	-				-1.2
34,002	-				-0.2
34,002	-				-0.2
34,002	-				-0.2
34,092	+		Rru_B0036	0.13	-0.2
34,092	+		Rru_B0036	0.13	-0.2
34,092	+		Rru_B0036	0.13	-0.2
34,093	-		Rru_B0036	0.13	-0.2
34,121	+		Rru_B0036	0.15	-0.2
34,121	+		Rru_B0036	0.15	-1.2
34,121	+		Rru_B0036	0.15	-0.2
34,455	+		Rru_B0036	0.44	-0.2
34,456	-		Rru_B0036	0.44	-2.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.5
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.4
34,512	+		Rru_B0036	0.49	-1.2
34,512	+		Rru_B0036	0.49	-1.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	-1.4
34,512	+		Rru_B0036	0.49	-0.2
34,512	+		Rru_B0036	0.49	+0.3
34,512	+		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-1.2
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-1.4
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-1.2
34,513	-		Rru_B0036	0.49	-0.7
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-1.8
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-0.2
34,513	-		Rru_B0036	0.49	-0.2
34,514	+		Rru_B0036	0.49	-0.6
34,514	+		Rru_B0036	0.49	-0.2
34,514	+		Rru_B0036	0.49	-0.2
34,514	+		Rru_B0036	0.49	-0.2
34,514	+		Rru_B0036	0.49	-1.0
34,514	+		Rru_B0036	0.49	-0.2
34,515	-		Rru_B0036	0.49	-0.2
34,515	-		Rru_B0036	0.49	-0.9
34,515	-		Rru_B0036	0.49	-1.2
34,515	-		Rru_B0036	0.49	-2.0
34,515	-		Rru_B0036	0.49	-0.6
34,515	-		Rru_B0036	0.49	-0.2
34,607	+		Rru_B0036	0.57	-1.3
34,625	+		Rru_B0036	0.58	-0.2
34,746	+		Rru_B0036	0.69	-0.2
34,746	+		Rru_B0036	0.69	-0.2
34,746	+		Rru_B0036	0.69	-0.2
34,747	-		Rru_B0036	0.69	-0.2
34,747	-		Rru_B0036	0.69	-0.2
34,747	-		Rru_B0036	0.69	-0.2
34,747	-		Rru_B0036	0.69	-0.8
34,748	+		Rru_B0036	0.69	-0.2
34,748	+		Rru_B0036	0.69	-0.2
34,749	-		Rru_B0036	0.69	-0.2
34,749	-		Rru_B0036	0.69	-0.2
34,749	-		Rru_B0036	0.69	-0.2
34,749	-		Rru_B0036	0.69	-0.8
34,749	-		Rru_B0036	0.69	-0.2
34,749	-		Rru_B0036	0.69	-0.2
34,749	-		Rru_B0036	0.69	-2.2
34,749	-		Rru_B0036	0.69	-0.2
34,781	+		Rru_B0036	0.72	-2.2
34,781	+		Rru_B0036	0.72	-0.2
34,782	-		Rru_B0036	0.72	-0.2
34,949	+		Rru_B0036	0.86	-3.0
35,214	-				-0.2
35,278	+				-0.2
35,279	-				-0.2
35,279	-				-0.2
35,279	-				-0.2
35,304	-				-1.8
35,305	+				-1.4
35,306	-				-0.2
35,306	-				-0.2
35,334	-				-0.2
35,359	-				-1.2
35,371	+				-1.2
35,371	+				-1.1
35,372	-				-0.2
35,372	-				-0.2
35,372	-				-1.6
35,372	-				-0.2
35,374	+				-0.2
35,374	+				-0.2
35,374	+				-0.2
35,374	+				-1.8
35,375	-				-1.2
35,375	-				-0.2
35,375	-				-1.2
35,375	-				-0.2
35,375	-				+0.8
35,375	-				-0.2
35,479	+				-1.8
35,480	-				-0.2
35,480	-				-0.2
35,480	-				-1.2
35,480	-				-1.2
35,508	-				-2.2
35,528	+				-0.2
35,540	+				-0.2
35,541	-				-0.2
35,541	-				-0.2
35,603	+				-0.2
35,615	+				-0.2
35,630	+		Rru_B0037	0.10	-0.2
35,630	+		Rru_B0037	0.10	-0.2
35,636	+		Rru_B0037	0.11	-0.2
35,636	+		Rru_B0037	0.11	-0.2
35,720	+		Rru_B0037	0.14	-2.0
35,720	+		Rru_B0037	0.14	-0.2
35,738	+		Rru_B0037	0.15	-0.2
35,767	+		Rru_B0037	0.16	-1.2
35,767	+		Rru_B0037	0.16	-0.2
35,767	+		Rru_B0037	0.16	-0.2
35,767	+		Rru_B0037	0.16	-1.8
35,767	+		Rru_B0037	0.16	-0.2
35,767	+		Rru_B0037	0.16	-0.2
35,768	-		Rru_B0037	0.16	-0.2
35,768	-		Rru_B0037	0.16	-1.2
35,768	-		Rru_B0037	0.16	-1.8
35,885	+		Rru_B0037	0.21	-0.2
35,885	+		Rru_B0037	0.21	-0.2
35,912	+		Rru_B0037	0.22	-2.3
35,912	+		Rru_B0037	0.22	-0.2
35,912	+		Rru_B0037	0.22	-0.2
35,912	+		Rru_B0037	0.22	-2.5
35,913	-		Rru_B0037	0.22	-0.2
35,913	-		Rru_B0037	0.22	-2.9
35,913	-		Rru_B0037	0.22	-0.2
35,913	-		Rru_B0037	0.22	-2.2
35,939	+		Rru_B0037	0.23	-1.2
35,939	+		Rru_B0037	0.23	-1.2
35,939	+		Rru_B0037	0.23	-0.2
35,939	+		Rru_B0037	0.23	-0.2
35,940	-		Rru_B0037	0.23	-2.3
35,940	-		Rru_B0037	0.23	-0.2
36,078	+		Rru_B0037	0.28	-0.2
36,078	+		Rru_B0037	0.28	-1.1
36,078	+		Rru_B0037	0.28	-2.2
36,079	-		Rru_B0037	0.28	-2.5
36,079	-		Rru_B0037	0.28	-0.2
36,079	-		Rru_B0037	0.28	-0.2
36,079	-		Rru_B0037	0.28	-0.2
36,079	-		Rru_B0037	0.28	-1.2
36,079	-		Rru_B0037	0.28	-0.2