Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0018 and Rru_B0019 are separated by 117 nucleotides Rru_B0019 and Rru_B0020 overlap by 1 nucleotides Rru_B0020 and Rru_B0021 are separated by 612 nucleotides Rru_B0021 and Rru_B0022 are separated by 43 nucleotides
Rru_B0018: Rru_B0018 - Protein of unknown function DUF161 (NCBI), at 17,434 to 18,111
_B0018
Rru_B0019: Rru_B0019 - O-methyltransferase, family 3 (NCBI), at 18,229 to 18,918
_B0019
Rru_B0020: Rru_B0020 - Major facilitator superfamily MFS_1 (NCBI), at 18,918 to 20,465
_B0020
Rru_B0021: Rru_B0021 - Transcriptional Regulator, Fis family (NCBI), at 21,078 to 21,272
_B0021
Rru_B0022: Rru_B0022 - Resolvase-like (NCBI), at 21,316 to 21,717
_B0022
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 18.153 kb on + strand at 18.154 kb on - strand at 18.160 kb on - strand at 18.556 kb on + strand, within Rru_B0019 at 18.556 kb on + strand, within Rru_B0019 at 18.557 kb on - strand, within Rru_B0019 at 18.557 kb on - strand, within Rru_B0019 at 18.557 kb on - strand, within Rru_B0019 at 18.694 kb on + strand, within Rru_B0019 at 18.694 kb on + strand, within Rru_B0019 at 18.694 kb on + strand, within Rru_B0019 at 18.694 kb on + strand, within Rru_B0019 at 18.694 kb on + strand, within Rru_B0019 at 18.695 kb on - strand, within Rru_B0019 at 18.695 kb on - strand, within Rru_B0019 at 18.695 kb on - strand, within Rru_B0019 at 18.718 kb on + strand, within Rru_B0019 at 18.718 kb on + strand, within Rru_B0019 at 18.719 kb on - strand, within Rru_B0019 at 18.719 kb on - strand, within Rru_B0019 at 18.820 kb on + strand, within Rru_B0019 at 18.820 kb on + strand, within Rru_B0019 at 18.820 kb on + strand, within Rru_B0019 at 18.820 kb on + strand, within Rru_B0019 at 18.820 kb on + strand, within Rru_B0019 at 18.821 kb on - strand, within Rru_B0019 at 18.821 kb on - strand, within Rru_B0019 at 18.821 kb on - strand, within Rru_B0019 at 18.821 kb on - strand, within Rru_B0019 at 18.821 kb on - strand, within Rru_B0019 at 18.830 kb on - strand, within Rru_B0019 at 18.830 kb on - strand, within Rru_B0019 at 18.830 kb on - strand, within Rru_B0019 at 18.854 kb on - strand at 18.877 kb on + strand at 18.878 kb on - strand at 18.878 kb on - strand at 18.878 kb on - strand at 19.074 kb on - strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.131 kb on + strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.132 kb on - strand, within Rru_B0020 at 19.384 kb on + strand, within Rru_B0020 at 19.384 kb on + strand, within Rru_B0020 at 19.384 kb on + strand, within Rru_B0020 at 19.384 kb on + strand, within Rru_B0020 at 19.385 kb on - strand, within Rru_B0020 at 19.425 kb on - strand, within Rru_B0020 at 19.425 kb on - strand, within Rru_B0020 at 19.591 kb on + strand, within Rru_B0020 at 19.591 kb on + strand, within Rru_B0020 at 19.591 kb on + strand, within Rru_B0020 at 19.591 kb on + strand, within Rru_B0020 at 19.591 kb on + strand, within Rru_B0020 at 19.592 kb on - strand, within Rru_B0020 at 19.592 kb on - strand, within Rru_B0020 at 19.663 kb on + strand, within Rru_B0020 at 19.663 kb on + strand, within Rru_B0020 at 19.664 kb on - strand, within Rru_B0020 at 19.664 kb on - strand, within Rru_B0020 at 19.690 kb on + strand, within Rru_B0020 at 19.691 kb on - strand, within Rru_B0020 at 19.803 kb on + strand, within Rru_B0020 at 19.803 kb on + strand, within Rru_B0020 at 19.803 kb on + strand, within Rru_B0020 at 19.803 kb on + strand, within Rru_B0020 at 19.803 kb on + strand, within Rru_B0020 at 19.804 kb on - strand, within Rru_B0020 at 19.804 kb on - strand, within Rru_B0020 at 19.804 kb on - strand, within Rru_B0020 at 19.804 kb on - strand, within Rru_B0020 at 19.804 kb on - strand, within Rru_B0020 at 19.804 kb on - strand, within Rru_B0020 at 19.815 kb on + strand, within Rru_B0020 at 19.815 kb on + strand, within Rru_B0020 at 19.815 kb on + strand, within Rru_B0020 at 19.816 kb on - strand, within Rru_B0020 at 19.816 kb on - strand, within Rru_B0020 at 19.830 kb on + strand, within Rru_B0020 at 19.831 kb on - strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.873 kb on + strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 19.874 kb on - strand, within Rru_B0020 at 20.021 kb on + strand, within Rru_B0020 at 20.021 kb on + strand, within Rru_B0020 at 20.021 kb on + strand, within Rru_B0020 at 20.022 kb on - strand, within Rru_B0020 at 20.022 kb on - strand, within Rru_B0020 at 20.022 kb on - strand, within Rru_B0020 at 20.022 kb on - strand, within Rru_B0020 at 20.028 kb on + strand, within Rru_B0020 at 20.029 kb on - strand, within Rru_B0020 at 20.037 kb on + strand, within Rru_B0020 at 20.037 kb on + strand, within Rru_B0020 at 20.037 kb on + strand, within Rru_B0020 at 20.037 kb on + strand, within Rru_B0020 at 20.038 kb on - strand, within Rru_B0020 at 20.038 kb on - strand, within Rru_B0020 at 20.038 kb on - strand, within Rru_B0020 at 20.038 kb on - strand, within Rru_B0020 at 20.038 kb on - strand, within Rru_B0020 at 20.296 kb on - strand, within Rru_B0020 at 20.296 kb on - strand, within Rru_B0020 at 20.296 kb on - strand, within Rru_B0020 at 20.296 kb on - strand, within Rru_B0020 at 20.335 kb on + strand at 20.336 kb on - strand at 20.336 kb on - strand at 20.344 kb on + strand at 20.344 kb on + strand at 20.345 kb on - strand at 20.345 kb on - strand at 20.345 kb on - strand at 20.466 kb on + strand at 20.466 kb on + strand at 20.467 kb on - strand at 20.522 kb on + strand at 20.522 kb on + strand at 20.553 kb on + strand at 20.553 kb on + strand at 20.553 kb on + strand at 20.554 kb on - strand at 20.554 kb on - strand at 20.554 kb on - strand at 20.554 kb on - strand at 20.582 kb on + strand at 20.583 kb on - strand at 20.583 kb on - strand at 20.583 kb on - strand at 20.638 kb on + strand at 20.638 kb on + strand at 20.642 kb on + strand at 20.643 kb on - strand at 20.643 kb on - strand at 20.741 kb on + strand at 20.860 kb on + strand at 20.861 kb on - strand at 20.916 kb on + strand at 20.916 kb on + strand at 20.917 kb on - strand at 20.955 kb on + strand at 20.955 kb on + strand at 20.956 kb on - strand at 20.976 kb on + strand at 20.990 kb on + strand at 20.991 kb on - strand at 21.051 kb on - strand at 21.149 kb on - strand, within Rru_B0021
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 18,153 + -0.2 18,154 - -0.2 18,160 - -0.2 18,556 + Rru_B0019 0.47 -0.2 18,556 + Rru_B0019 0.47 -1.4 18,557 - Rru_B0019 0.48 -0.2 18,557 - Rru_B0019 0.48 -1.3 18,557 - Rru_B0019 0.48 -0.2 18,694 + Rru_B0019 0.67 -0.2 18,694 + Rru_B0019 0.67 -0.2 18,694 + Rru_B0019 0.67 -1.2 18,694 + Rru_B0019 0.67 -0.2 18,694 + Rru_B0019 0.67 -0.5 18,695 - Rru_B0019 0.68 -0.2 18,695 - Rru_B0019 0.68 -1.6 18,695 - Rru_B0019 0.68 -0.2 18,718 + Rru_B0019 0.71 -0.2 18,718 + Rru_B0019 0.71 -0.2 18,719 - Rru_B0019 0.71 -1.1 18,719 - Rru_B0019 0.71 -1.7 18,820 + Rru_B0019 0.86 -0.2 18,820 + Rru_B0019 0.86 -0.2 18,820 + Rru_B0019 0.86 +0.4 18,820 + Rru_B0019 0.86 -0.2 18,820 + Rru_B0019 0.86 -0.2 18,821 - Rru_B0019 0.86 -1.5 18,821 - Rru_B0019 0.86 -0.2 18,821 - Rru_B0019 0.86 -0.2 18,821 - Rru_B0019 0.86 -0.2 18,821 - Rru_B0019 0.86 -0.2 18,830 - Rru_B0019 0.87 -0.2 18,830 - Rru_B0019 0.87 -1.5 18,830 - Rru_B0019 0.87 -0.2 18,854 - -0.2 18,877 + -0.2 18,878 - -0.1 18,878 - -0.2 18,878 - -0.2 19,074 - Rru_B0020 0.10 -0.2 19,131 + Rru_B0020 0.14 -0.2 19,131 + Rru_B0020 0.14 -0.2 19,131 + Rru_B0020 0.14 -0.2 19,131 + Rru_B0020 0.14 -0.2 19,131 + Rru_B0020 0.14 -0.2 19,131 + Rru_B0020 0.14 -0.2 19,131 + Rru_B0020 0.14 -0.2 19,131 + Rru_B0020 0.14 +0.0 19,131 + Rru_B0020 0.14 -1.2 19,131 + Rru_B0020 0.14 -0.2 19,131 + Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 +0.5 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 -0.2 19,132 - Rru_B0020 0.14 +0.1 19,132 - Rru_B0020 0.14 -0.2 19,384 + Rru_B0020 0.30 -2.1 19,384 + Rru_B0020 0.30 -2.8 19,384 + Rru_B0020 0.30 -0.2 19,384 + Rru_B0020 0.30 -1.2 19,385 - Rru_B0020 0.30 -0.2 19,425 - Rru_B0020 0.33 -0.2 19,425 - Rru_B0020 0.33 +0.5 19,591 + Rru_B0020 0.43 -1.2 19,591 + Rru_B0020 0.43 -0.2 19,591 + Rru_B0020 0.43 -0.2 19,591 + Rru_B0020 0.43 -0.2 19,591 + Rru_B0020 0.43 -0.9 19,592 - Rru_B0020 0.44 -0.2 19,592 - Rru_B0020 0.44 -0.2 19,663 + Rru_B0020 0.48 -0.2 19,663 + Rru_B0020 0.48 -0.2 19,664 - Rru_B0020 0.48 -0.2 19,664 - Rru_B0020 0.48 -1.2 19,690 + Rru_B0020 0.50 -0.2 19,691 - Rru_B0020 0.50 -0.2 19,803 + Rru_B0020 0.57 -0.2 19,803 + Rru_B0020 0.57 -0.8 19,803 + Rru_B0020 0.57 -1.4 19,803 + Rru_B0020 0.57 -0.2 19,803 + Rru_B0020 0.57 -0.2 19,804 - Rru_B0020 0.57 -2.0 19,804 - Rru_B0020 0.57 -0.2 19,804 - Rru_B0020 0.57 -0.2 19,804 - Rru_B0020 0.57 -0.2 19,804 - Rru_B0020 0.57 -1.8 19,804 - Rru_B0020 0.57 -0.2 19,815 + Rru_B0020 0.58 -0.2 19,815 + Rru_B0020 0.58 -0.2 19,815 + Rru_B0020 0.58 -2.1 19,816 - Rru_B0020 0.58 -0.2 19,816 - Rru_B0020 0.58 +0.8 19,830 + Rru_B0020 0.59 -0.2 19,831 - Rru_B0020 0.59 +0.3 19,873 + Rru_B0020 0.62 -0.2 19,873 + Rru_B0020 0.62 -0.2 19,873 + Rru_B0020 0.62 -4.4 19,873 + Rru_B0020 0.62 -0.7 19,873 + Rru_B0020 0.62 -0.2 19,873 + Rru_B0020 0.62 -0.2 19,873 + Rru_B0020 0.62 -0.2 19,873 + Rru_B0020 0.62 -0.2 19,873 + Rru_B0020 0.62 -0.2 19,873 + Rru_B0020 0.62 -0.2 19,873 + Rru_B0020 0.62 -0.2 19,873 + Rru_B0020 0.62 -1.2 19,874 - Rru_B0020 0.62 -1.6 19,874 - Rru_B0020 0.62 -0.3 19,874 - Rru_B0020 0.62 -0.2 19,874 - Rru_B0020 0.62 -0.2 19,874 - Rru_B0020 0.62 -0.2 19,874 - Rru_B0020 0.62 -0.2 19,874 - Rru_B0020 0.62 -0.2 19,874 - Rru_B0020 0.62 -1.7 19,874 - Rru_B0020 0.62 -1.2 19,874 - Rru_B0020 0.62 -0.2 19,874 - Rru_B0020 0.62 -0.6 19,874 - Rru_B0020 0.62 -0.2 19,874 - Rru_B0020 0.62 -0.2 20,021 + Rru_B0020 0.71 -0.8 20,021 + Rru_B0020 0.71 -0.2 20,021 + Rru_B0020 0.71 -0.2 20,022 - Rru_B0020 0.71 -0.2 20,022 - Rru_B0020 0.71 -0.2 20,022 - Rru_B0020 0.71 -0.2 20,022 - Rru_B0020 0.71 -0.2 20,028 + Rru_B0020 0.72 +0.4 20,029 - Rru_B0020 0.72 -0.2 20,037 + Rru_B0020 0.72 -0.2 20,037 + Rru_B0020 0.72 -2.2 20,037 + Rru_B0020 0.72 +0.1 20,037 + Rru_B0020 0.72 -1.0 20,038 - Rru_B0020 0.72 -0.4 20,038 - Rru_B0020 0.72 -0.2 20,038 - Rru_B0020 0.72 -1.2 20,038 - Rru_B0020 0.72 -0.2 20,038 - Rru_B0020 0.72 -1.3 20,296 - Rru_B0020 0.89 -1.8 20,296 - Rru_B0020 0.89 -0.2 20,296 - Rru_B0020 0.89 -0.2 20,296 - Rru_B0020 0.89 -0.2 20,335 + -2.2 20,336 - -0.2 20,336 - -0.2 20,344 + -1.2 20,344 + -1.0 20,345 - -1.2 20,345 - -1.2 20,345 - -0.2 20,466 + -1.2 20,466 + -0.2 20,467 - -0.2 20,522 + +0.3 20,522 + +0.0 20,553 + -0.2 20,553 + +0.2 20,553 + -0.5 20,554 - -0.2 20,554 - -0.2 20,554 - -0.2 20,554 - -0.2 20,582 + -0.2 20,583 - -1.4 20,583 - -0.0 20,583 - -0.2 20,638 + -0.2 20,638 + +0.2 20,642 + -1.2 20,643 - -0.2 20,643 - -0.2 20,741 + -0.2 20,860 + -2.1 20,861 - -1.2 20,916 + -0.2 20,916 + -1.2 20,917 - -0.2 20,955 + -0.2 20,955 + -0.2 20,956 - -1.2 20,976 + -1.8 20,990 + -0.2 20,991 - -0.2 21,051 - -0.9 21,149 - Rru_B0021 0.36 -0.2
Or see this region's nucleotide sequence