Experiment: KB with Nitrofurantoin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4782 and Psyr_4783 are separated by 15 nucleotides Psyr_4783 and Psyr_4784 are separated by 84 nucleotides Psyr_4784 and Psyr_4785 are separated by 228 nucleotides Psyr_4785 and Psyr_4786 are separated by 55 nucleotides
Psyr_4782: Psyr_4782 - NADH:flavin oxidoreductase/NADH oxidase, at 5,669,956 to 5,672,016
_4782
Psyr_4783: Psyr_4783 - conserved hypothetical protein, at 5,672,032 to 5,672,562
_4783
Psyr_4784: Psyr_4784 - Peptidase M19, renal dipeptidase, at 5,672,647 to 5,673,624
_4784
Psyr_4785: Psyr_4785 - Protein of unknown function DUF1311, at 5,673,853 to 5,674,263
_4785
Psyr_4786: Psyr_4786 - hypothetical protein, at 5,674,319 to 5,674,738
_4786
Position (kb) 5672
5673
5674 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5671.883 kb on + strand at 5671.884 kb on - strand at 5671.884 kb on - strand at 5671.884 kb on - strand at 5671.884 kb on - strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5672.087 kb on + strand, within Psyr_4783 at 5672.088 kb on - strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.207 kb on + strand, within Psyr_4783 at 5672.207 kb on + strand, within Psyr_4783 at 5672.207 kb on + strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.312 kb on + strand at 5672.312 kb on + strand, within Psyr_4783 at 5672.312 kb on + strand, within Psyr_4783 at 5672.312 kb on + strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.400 kb on - strand, within Psyr_4783 at 5672.400 kb on - strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.481 kb on - strand, within Psyr_4783 at 5672.481 kb on - strand, within Psyr_4783 at 5672.590 kb on + strand at 5672.635 kb on - strand at 5672.635 kb on - strand at 5672.635 kb on - strand at 5672.843 kb on + strand, within Psyr_4784 at 5672.843 kb on + strand, within Psyr_4784 at 5672.844 kb on - strand, within Psyr_4784 at 5672.884 kb on - strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.943 kb on - strand, within Psyr_4784 at 5673.092 kb on + strand, within Psyr_4784 at 5673.092 kb on + strand, within Psyr_4784 at 5673.092 kb on + strand, within Psyr_4784 at 5673.093 kb on - strand, within Psyr_4784 at 5673.234 kb on - strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.315 kb on - strand, within Psyr_4784 at 5673.332 kb on + strand, within Psyr_4784 at 5673.332 kb on + strand, within Psyr_4784 at 5673.333 kb on - strand, within Psyr_4784 at 5673.333 kb on - strand, within Psyr_4784 at 5673.607 kb on + strand at 5673.607 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.689 kb on - strand at 5673.689 kb on - strand at 5673.689 kb on - strand at 5673.689 kb on - strand at 5673.790 kb on - strand at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5674.086 kb on + strand, within Psyr_4785 at 5674.237 kb on + strand at 5674.238 kb on - strand at 5674.262 kb on - strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.293 kb on + strand at 5674.293 kb on + strand at 5674.293 kb on + strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.324 kb on + strand at 5674.324 kb on + strand at 5674.325 kb on - strand at 5674.325 kb on - strand at 5674.325 kb on - strand at 5674.335 kb on + strand at 5674.335 kb on + strand at 5674.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.25 mg/ml remove 5,671,883 + -0.0 5,671,884 - +0.1 5,671,884 - +1.0 5,671,884 - +0.6 5,671,884 - -1.1 5,671,886 + +0.0 5,671,886 + +0.3 5,671,886 + +0.4 5,671,886 + -0.3 5,671,886 + +0.8 5,671,887 - +0.0 5,671,887 - -0.9 5,671,887 - -0.8 5,671,887 - +0.5 5,671,887 - -0.2 5,671,887 - +0.7 5,671,887 - +0.6 5,671,887 - -0.6 5,672,087 + Psyr_4783 0.10 -0.0 5,672,088 - Psyr_4783 0.11 -0.7 5,672,174 + Psyr_4783 0.27 -0.5 5,672,174 + Psyr_4783 0.27 -0.2 5,672,174 + Psyr_4783 0.27 +0.2 5,672,174 + Psyr_4783 0.27 +0.3 5,672,174 + Psyr_4783 0.27 +0.3 5,672,174 + Psyr_4783 0.27 -0.7 5,672,175 - Psyr_4783 0.27 -0.5 5,672,175 - Psyr_4783 0.27 -0.5 5,672,175 - Psyr_4783 0.27 +0.8 5,672,175 - Psyr_4783 0.27 -0.7 5,672,175 - Psyr_4783 0.27 -0.6 5,672,175 - Psyr_4783 0.27 +2.6 5,672,175 - Psyr_4783 0.27 -0.4 5,672,175 - Psyr_4783 0.27 -0.2 5,672,207 + Psyr_4783 0.33 +1.1 5,672,207 + Psyr_4783 0.33 -1.0 5,672,207 + Psyr_4783 0.33 +1.5 5,672,208 - Psyr_4783 0.33 -0.2 5,672,208 - Psyr_4783 0.33 -0.6 5,672,208 - Psyr_4783 0.33 -0.7 5,672,208 - Psyr_4783 0.33 -0.4 5,672,312 + -1.2 5,672,312 + Psyr_4783 0.53 +1.4 5,672,312 + Psyr_4783 0.53 -0.5 5,672,312 + Psyr_4783 0.53 -1.2 5,672,313 - Psyr_4783 0.53 +0.6 5,672,313 - Psyr_4783 0.53 -0.6 5,672,313 - Psyr_4783 0.53 +0.5 5,672,313 - Psyr_4783 0.53 +0.6 5,672,313 - Psyr_4783 0.53 -0.7 5,672,313 - Psyr_4783 0.53 -0.2 5,672,399 + Psyr_4783 0.69 -0.4 5,672,399 + Psyr_4783 0.69 +0.1 5,672,399 + Psyr_4783 0.69 +0.1 5,672,399 + Psyr_4783 0.69 +0.8 5,672,400 - Psyr_4783 0.69 +1.5 5,672,400 - Psyr_4783 0.69 -0.2 5,672,480 + Psyr_4783 0.84 -0.9 5,672,480 + Psyr_4783 0.84 -0.8 5,672,480 + Psyr_4783 0.84 +0.8 5,672,481 - Psyr_4783 0.85 -0.2 5,672,481 - Psyr_4783 0.85 -1.7 5,672,590 + +0.8 5,672,635 - +0.9 5,672,635 - +0.2 5,672,635 - -0.5 5,672,843 + Psyr_4784 0.20 +0.3 5,672,843 + Psyr_4784 0.20 -1.2 5,672,844 - Psyr_4784 0.20 +1.0 5,672,884 - Psyr_4784 0.24 -0.7 5,672,924 + Psyr_4784 0.28 -0.1 5,672,924 + Psyr_4784 0.28 -0.1 5,672,924 + Psyr_4784 0.28 -0.8 5,672,924 + Psyr_4784 0.28 -0.4 5,672,924 + Psyr_4784 0.28 -0.1 5,672,924 + Psyr_4784 0.28 -0.4 5,672,925 - Psyr_4784 0.28 -1.4 5,672,925 - Psyr_4784 0.28 -0.2 5,672,925 - Psyr_4784 0.28 +0.1 5,672,925 - Psyr_4784 0.28 -0.4 5,672,943 - Psyr_4784 0.30 -1.6 5,673,092 + Psyr_4784 0.46 +0.0 5,673,092 + Psyr_4784 0.46 +1.3 5,673,092 + Psyr_4784 0.46 -2.0 5,673,093 - Psyr_4784 0.46 +0.1 5,673,234 - Psyr_4784 0.60 -0.2 5,673,266 + Psyr_4784 0.63 +1.1 5,673,266 + Psyr_4784 0.63 -0.6 5,673,267 - Psyr_4784 0.63 -0.3 5,673,267 - Psyr_4784 0.63 +0.7 5,673,267 - Psyr_4784 0.63 +0.3 5,673,315 - Psyr_4784 0.68 -0.6 5,673,332 + Psyr_4784 0.70 -0.1 5,673,332 + Psyr_4784 0.70 -0.2 5,673,333 - Psyr_4784 0.70 -1.6 5,673,333 - Psyr_4784 0.70 -0.9 5,673,607 + -0.1 5,673,607 + -0.6 5,673,688 + +0.4 5,673,688 + +1.1 5,673,688 + -0.6 5,673,688 + -0.5 5,673,688 + +1.1 5,673,689 - +0.3 5,673,689 - +1.6 5,673,689 - -0.9 5,673,689 - -0.6 5,673,790 - +0.7 5,673,905 + Psyr_4785 0.13 +0.5 5,673,905 + Psyr_4785 0.13 -0.2 5,673,905 + Psyr_4785 0.13 -0.4 5,673,905 + Psyr_4785 0.13 -0.9 5,673,905 + Psyr_4785 0.13 -1.5 5,673,905 + Psyr_4785 0.13 -2.2 5,673,905 + Psyr_4785 0.13 +1.0 5,673,905 + Psyr_4785 0.13 -0.4 5,673,905 + Psyr_4785 0.13 -0.5 5,673,905 + Psyr_4785 0.13 -0.2 5,673,905 + Psyr_4785 0.13 -0.4 5,673,905 + Psyr_4785 0.13 +2.9 5,673,906 - Psyr_4785 0.13 +0.4 5,673,906 - Psyr_4785 0.13 -0.9 5,673,906 - Psyr_4785 0.13 -1.1 5,673,906 - Psyr_4785 0.13 -0.6 5,673,906 - Psyr_4785 0.13 -0.2 5,673,906 - Psyr_4785 0.13 +0.5 5,673,906 - Psyr_4785 0.13 -0.2 5,673,906 - Psyr_4785 0.13 -0.4 5,673,906 - Psyr_4785 0.13 -0.8 5,673,906 - Psyr_4785 0.13 -1.0 5,673,906 - Psyr_4785 0.13 +0.2 5,673,906 - Psyr_4785 0.13 -0.3 5,673,906 - Psyr_4785 0.13 +0.4 5,673,906 - Psyr_4785 0.13 +0.4 5,673,906 - Psyr_4785 0.13 +0.3 5,673,906 - Psyr_4785 0.13 -1.2 5,673,906 - Psyr_4785 0.13 +1.6 5,673,906 - Psyr_4785 0.13 +1.4 5,674,086 + Psyr_4785 0.57 -0.4 5,674,237 + -0.9 5,674,238 - +0.4 5,674,262 - +0.2 5,674,291 + -0.2 5,674,291 + -0.2 5,674,291 + -0.3 5,674,291 + +0.3 5,674,292 - +0.3 5,674,292 - -0.6 5,674,292 - -0.3 5,674,292 - -0.9 5,674,292 - -1.1 5,674,292 - +1.8 5,674,292 - +0.4 5,674,292 - -1.2 5,674,292 - -0.2 5,674,292 - +0.4 5,674,292 - +0.5 5,674,292 - -0.5 5,674,292 - +0.4 5,674,292 - -0.3 5,674,293 + -0.4 5,674,293 + +0.2 5,674,293 + -0.2 5,674,294 - -0.0 5,674,294 - -0.5 5,674,294 - -1.5 5,674,294 - -0.6 5,674,294 - +0.8 5,674,294 - +0.2 5,674,324 + -0.0 5,674,324 + -1.0 5,674,325 - -0.2 5,674,325 - +0.2 5,674,325 - -0.0 5,674,335 + +1.4 5,674,335 + -0.4 5,674,336 - +0.9
Or see this region's nucleotide sequence