Experiment: KB with Nitrofurantoin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3959 and Psyr_3960 overlap by 32 nucleotides Psyr_3960 and Psyr_3961 overlap by 17 nucleotides Psyr_3961 and Psyr_3962 are separated by 146 nucleotides Psyr_3962 and Psyr_3963 are separated by 111 nucleotides Psyr_3963 and Psyr_3964 are separated by 10 nucleotides
Psyr_3959: Psyr_3959 - L-aspartate oxidase, at 4,707,097 to 4,708,713
_3959
Psyr_3960: Psyr_3960 - conserved hypothetical protein, at 4,708,682 to 4,709,146
_3960
Psyr_3961: Psyr_3961 - Protein of unknown function DUF339, at 4,709,130 to 4,709,384
_3961
Psyr_3962: Psyr_3962 - Glycine cleavage T protein (aminomethyl transferase), at 4,709,531 to 4,710,478
_3962
Psyr_3963: Psyr_3963 - conserved hypothetical protein, at 4,710,590 to 4,711,411
_3963
Psyr_3964: Psyr_3964 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,711,422 to 4,712,804
_3964
Position (kb) 4709
4710
4711 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.639 kb on + strand at 4708.651 kb on + strand at 4708.659 kb on + strand at 4708.683 kb on + strand at 4708.684 kb on - strand at 4708.684 kb on - strand at 4708.684 kb on - strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.771 kb on + strand, within Psyr_3960 at 4708.771 kb on + strand, within Psyr_3960 at 4708.865 kb on + strand, within Psyr_3960 at 4708.866 kb on - strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.974 kb on - strand, within Psyr_3960 at 4709.001 kb on - strand, within Psyr_3960 at 4709.001 kb on - strand, within Psyr_3960 at 4709.046 kb on + strand, within Psyr_3960 at 4709.047 kb on - strand, within Psyr_3960 at 4709.082 kb on + strand, within Psyr_3960 at 4709.082 kb on + strand, within Psyr_3960 at 4709.082 kb on + strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.402 kb on - strand at 4709.402 kb on - strand at 4709.402 kb on - strand at 4709.412 kb on + strand at 4709.412 kb on + strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.414 kb on + strand at 4709.414 kb on + strand at 4709.414 kb on + strand at 4709.415 kb on - strand at 4709.415 kb on - strand at 4709.415 kb on - strand at 4709.415 kb on - strand at 4709.467 kb on + strand at 4709.468 kb on - strand at 4709.468 kb on - strand at 4709.479 kb on + strand at 4709.496 kb on + strand at 4709.496 kb on + strand at 4709.496 kb on + strand at 4710.443 kb on + strand at 4710.502 kb on + strand at 4710.503 kb on - strand at 4710.511 kb on + strand at 4710.718 kb on + strand, within Psyr_3963 at 4710.718 kb on + strand, within Psyr_3963 at 4710.718 kb on + strand, within Psyr_3963 at 4710.857 kb on + strand, within Psyr_3963 at 4710.857 kb on + strand, within Psyr_3963 at 4710.857 kb on + strand, within Psyr_3963 at 4710.857 kb on + strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.858 kb on - strand, within Psyr_3963 at 4710.977 kb on + strand, within Psyr_3963 at 4710.977 kb on + strand, within Psyr_3963 at 4710.978 kb on - strand, within Psyr_3963 at 4711.070 kb on + strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.071 kb on - strand, within Psyr_3963 at 4711.245 kb on - strand, within Psyr_3963 at 4711.258 kb on - strand, within Psyr_3963 at 4711.258 kb on - strand, within Psyr_3963 at 4711.334 kb on + strand at 4711.334 kb on + strand at 4711.335 kb on - strand at 4711.406 kb on + strand at 4711.406 kb on + strand at 4711.406 kb on + strand at 4711.407 kb on - strand at 4711.409 kb on + strand at 4711.409 kb on + strand at 4711.446 kb on + strand at 4711.447 kb on - strand at 4711.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.25 mg/ml remove 4,708,537 + Psyr_3959 0.89 +0.6 4,708,537 + Psyr_3959 0.89 -0.3 4,708,537 + Psyr_3959 0.89 +0.9 4,708,537 + Psyr_3959 0.89 -0.0 4,708,537 + Psyr_3959 0.89 -0.9 4,708,537 + Psyr_3959 0.89 +1.0 4,708,537 + Psyr_3959 0.89 -0.4 4,708,537 + Psyr_3959 0.89 -0.3 4,708,537 + Psyr_3959 0.89 -1.4 4,708,538 - Psyr_3959 0.89 -0.3 4,708,538 - Psyr_3959 0.89 -0.3 4,708,538 - Psyr_3959 0.89 +1.0 4,708,538 - Psyr_3959 0.89 +1.3 4,708,538 - Psyr_3959 0.89 +0.0 4,708,639 + -0.8 4,708,651 + -0.8 4,708,659 + +0.1 4,708,683 + -0.3 4,708,684 - -1.3 4,708,684 - -1.0 4,708,684 - +0.8 4,708,702 + -0.4 4,708,702 + +1.0 4,708,702 + +1.0 4,708,702 + -0.5 4,708,702 + +0.1 4,708,702 + +0.5 4,708,702 + +1.0 4,708,702 + +0.3 4,708,702 + +0.8 4,708,702 + +0.1 4,708,702 + +0.5 4,708,702 + +1.3 4,708,703 - -1.7 4,708,703 - +0.3 4,708,703 - -0.4 4,708,703 - -0.4 4,708,703 - -0.2 4,708,703 - -0.3 4,708,703 - -0.8 4,708,703 - +0.9 4,708,703 - -0.4 4,708,703 - +0.7 4,708,771 + Psyr_3960 0.19 +0.9 4,708,771 + Psyr_3960 0.19 -0.9 4,708,865 + Psyr_3960 0.39 +0.2 4,708,866 - Psyr_3960 0.40 -0.2 4,708,892 + Psyr_3960 0.45 -0.3 4,708,892 + Psyr_3960 0.45 +0.0 4,708,892 + Psyr_3960 0.45 -0.0 4,708,892 + Psyr_3960 0.45 +0.5 4,708,893 - Psyr_3960 0.45 +1.8 4,708,893 - Psyr_3960 0.45 -0.1 4,708,893 - Psyr_3960 0.45 -0.5 4,708,893 - Psyr_3960 0.45 +0.4 4,708,893 - Psyr_3960 0.45 -0.3 4,708,893 - Psyr_3960 0.45 +1.4 4,708,893 - Psyr_3960 0.45 +0.7 4,708,974 - Psyr_3960 0.63 +0.3 4,709,001 - Psyr_3960 0.69 -0.1 4,709,001 - Psyr_3960 0.69 -0.9 4,709,046 + Psyr_3960 0.78 -0.1 4,709,047 - Psyr_3960 0.78 +0.2 4,709,082 + Psyr_3960 0.86 +0.3 4,709,082 + Psyr_3960 0.86 -0.3 4,709,082 + Psyr_3960 0.86 +0.1 4,709,083 - Psyr_3960 0.86 +0.1 4,709,083 - Psyr_3960 0.86 -0.8 4,709,083 - Psyr_3960 0.86 +0.9 4,709,083 - Psyr_3960 0.86 +0.1 4,709,083 - Psyr_3960 0.86 -0.8 4,709,402 - -0.4 4,709,402 - -0.2 4,709,402 - -1.5 4,709,412 + -2.8 4,709,412 + -0.4 4,709,413 - +2.4 4,709,413 - -0.1 4,709,413 - -0.4 4,709,413 - +0.9 4,709,413 - +0.6 4,709,413 - +0.6 4,709,413 - +0.0 4,709,414 + -0.1 4,709,414 + +1.1 4,709,414 + +1.0 4,709,415 - +0.1 4,709,415 - +0.3 4,709,415 - +1.1 4,709,415 - -1.0 4,709,467 + +1.6 4,709,468 - +1.7 4,709,468 - -0.5 4,709,479 + +2.1 4,709,496 + -0.5 4,709,496 + +0.0 4,709,496 + +0.2 4,710,443 + +0.3 4,710,502 + +0.6 4,710,503 - +0.2 4,710,511 + +0.8 4,710,718 + Psyr_3963 0.16 +0.2 4,710,718 + Psyr_3963 0.16 +0.6 4,710,718 + Psyr_3963 0.16 +2.3 4,710,857 + Psyr_3963 0.32 -0.7 4,710,857 + Psyr_3963 0.32 -0.4 4,710,857 + Psyr_3963 0.32 -1.1 4,710,857 + Psyr_3963 0.32 +0.5 4,710,858 - Psyr_3963 0.33 +0.4 4,710,858 - Psyr_3963 0.33 +3.9 4,710,858 - Psyr_3963 0.33 -0.4 4,710,858 - Psyr_3963 0.33 +0.8 4,710,858 - Psyr_3963 0.33 +0.1 4,710,858 - Psyr_3963 0.33 -0.3 4,710,858 - Psyr_3963 0.33 +0.8 4,710,858 - Psyr_3963 0.33 +1.0 4,710,858 - Psyr_3963 0.33 +0.4 4,710,977 + Psyr_3963 0.47 -1.7 4,710,977 + Psyr_3963 0.47 +0.2 4,710,978 - Psyr_3963 0.47 -3.8 4,711,070 + Psyr_3963 0.58 -0.3 4,711,071 - Psyr_3963 0.59 -0.5 4,711,071 - Psyr_3963 0.59 +0.5 4,711,245 - Psyr_3963 0.80 +0.0 4,711,258 - Psyr_3963 0.81 +0.7 4,711,258 - Psyr_3963 0.81 +1.1 4,711,334 + -0.0 4,711,334 + +0.7 4,711,335 - +0.1 4,711,406 + -1.0 4,711,406 + -0.3 4,711,406 + -0.2 4,711,407 - -0.8 4,711,409 + -0.7 4,711,409 + -0.3 4,711,446 + +1.3 4,711,447 - +0.4 4,711,447 - +0.2
Or see this region's nucleotide sequence