Experiment: KB with Nitrofurantoin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3947 and Psyr_3948 are separated by 8 nucleotides Psyr_3948 and Psyr_3949 are separated by 59 nucleotides Psyr_3949 and Psyr_3950 are separated by 60 nucleotides Psyr_3950 and Psyr_3951 overlap by 8 nucleotides
Psyr_3947: Psyr_3947 - Methyltransferase, putative, at 4,695,279 to 4,696,238
_3947
Psyr_3948: Psyr_3948 - pyridoxine 5'-phosphate synthase, at 4,696,247 to 4,696,987
_3948
Psyr_3949: Psyr_3949 - DNA replication and repair protein RecO, at 4,697,047 to 4,697,730
_3949
Psyr_3950: Psyr_3950 - Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era, at 4,697,791 to 4,698,693
_3950
Psyr_3951: Psyr_3951 - RNAse III, at 4,698,686 to 4,699,375
_3951
Position (kb) 4697
4698 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4696.249 kb on - strand at 4697.037 kb on + strand at 4697.038 kb on - strand at 4697.216 kb on + strand, within Psyr_3949 at 4697.216 kb on + strand, within Psyr_3949 at 4697.216 kb on + strand, within Psyr_3949 at 4697.217 kb on - strand, within Psyr_3949 at 4697.217 kb on - strand, within Psyr_3949 at 4697.252 kb on + strand, within Psyr_3949 at 4697.252 kb on + strand, within Psyr_3949 at 4697.253 kb on - strand, within Psyr_3949 at 4697.253 kb on - strand, within Psyr_3949 at 4697.253 kb on - strand, within Psyr_3949 at 4697.399 kb on + strand, within Psyr_3949 at 4697.465 kb on + strand, within Psyr_3949 at 4697.465 kb on + strand at 4697.465 kb on + strand, within Psyr_3949 at 4697.466 kb on - strand, within Psyr_3949 at 4697.466 kb on - strand, within Psyr_3949 at 4697.466 kb on - strand, within Psyr_3949 at 4697.702 kb on + strand at 4697.702 kb on + strand at 4697.702 kb on + strand at 4697.702 kb on + strand at 4697.702 kb on + strand at 4697.702 kb on + strand at 4697.702 kb on + strand at 4697.702 kb on + strand at 4697.702 kb on + strand at 4697.702 kb on + strand at 4697.702 kb on + strand at 4697.703 kb on - strand at 4697.703 kb on - strand at 4697.703 kb on - strand at 4697.703 kb on - strand at 4697.703 kb on - strand at 4697.703 kb on - strand at 4697.793 kb on - strand at 4697.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.25 mg/ml remove 4,696,249 - -1.5 4,697,037 + -0.6 4,697,038 - -0.1 4,697,216 + Psyr_3949 0.25 -2.3 4,697,216 + Psyr_3949 0.25 -3.3 4,697,216 + Psyr_3949 0.25 -1.8 4,697,217 - Psyr_3949 0.25 -2.0 4,697,217 - Psyr_3949 0.25 -4.4 4,697,252 + Psyr_3949 0.30 -0.4 4,697,252 + Psyr_3949 0.30 -2.9 4,697,253 - Psyr_3949 0.30 +0.6 4,697,253 - Psyr_3949 0.30 -2.9 4,697,253 - Psyr_3949 0.30 -2.8 4,697,399 + Psyr_3949 0.51 -2.3 4,697,465 + Psyr_3949 0.61 -3.3 4,697,465 + +0.6 4,697,465 + Psyr_3949 0.61 -3.0 4,697,466 - Psyr_3949 0.61 -0.4 4,697,466 - Psyr_3949 0.61 -1.4 4,697,466 - Psyr_3949 0.61 -4.0 4,697,702 + -3.1 4,697,702 + -3.7 4,697,702 + -3.3 4,697,702 + -1.9 4,697,702 + -1.4 4,697,702 + -1.4 4,697,702 + -1.9 4,697,702 + -2.1 4,697,702 + -4.7 4,697,702 + -3.3 4,697,702 + -1.4 4,697,703 - -0.2 4,697,703 - +0.2 4,697,703 - -0.5 4,697,703 - +0.1 4,697,703 - +0.9 4,697,703 - -3.6 4,697,793 - +0.0 4,697,793 - +1.7
Or see this region's nucleotide sequence