Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3661

Experiment: KB with Nitrofurantoin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3659 and Psyr_3660 are separated by 15 nucleotidesPsyr_3660 and Psyr_3661 are separated by 169 nucleotidesPsyr_3661 and Psyr_3662 overlap by 8 nucleotidesPsyr_3662 and Psyr_3663 are separated by 20 nucleotides Psyr_3659: Psyr_3659 - transcriptional regulator, BolA protein family, at 4,346,503 to 4,346,796 _3659 Psyr_3660: Psyr_3660 - conserved hypothetical protein, at 4,346,812 to 4,347,339 _3660 Psyr_3661: Psyr_3661 - Fumarate hydratase, class II, at 4,347,509 to 4,348,903 _3661 Psyr_3662: Psyr_3662 - NAD(P)H dehydrogenase (quinone), at 4,348,896 to 4,349,510 _3662 Psyr_3663: Psyr_3663 - Protein of unknown function DUF6, at 4,349,531 to 4,350,490 _3663 Position (kb) 4347 4348 4349Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.570 kb on + strand, within Psyr_3659at 4346.571 kb on - strand, within Psyr_3659at 4346.571 kb on - strand, within Psyr_3659at 4346.624 kb on + strand, within Psyr_3659at 4346.625 kb on - strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.690 kb on + strand, within Psyr_3659at 4346.691 kb on - strand, within Psyr_3659at 4346.691 kb on - strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.718 kb on + strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.719 kb on - strand, within Psyr_3659at 4346.734 kb on + strand, within Psyr_3659at 4346.734 kb on + strand, within Psyr_3659at 4346.734 kb on + strand, within Psyr_3659at 4346.735 kb on - strand, within Psyr_3659at 4346.735 kb on - strand, within Psyr_3659at 4346.735 kb on - strand, within Psyr_3659at 4346.994 kb on - strand, within Psyr_3660at 4347.041 kb on + strand, within Psyr_3660at 4347.041 kb on + strand, within Psyr_3660at 4347.041 kb on + strand, within Psyr_3660at 4347.042 kb on - strand, within Psyr_3660at 4347.042 kb on - strand, within Psyr_3660at 4347.042 kb on - strand, within Psyr_3660at 4347.116 kb on + strand, within Psyr_3660at 4347.117 kb on - strand, within Psyr_3660at 4347.117 kb on - strand, within Psyr_3660at 4347.350 kb on + strandat 4347.354 kb on + strandat 4347.354 kb on + strandat 4347.355 kb on - strandat 4347.355 kb on - strandat 4347.395 kb on + strandat 4347.396 kb on - strandat 4347.466 kb on + strandat 4347.467 kb on - strandat 4347.477 kb on - strandat 4347.477 kb on - strandat 4347.493 kb on + strandat 4347.493 kb on + strandat 4347.493 kb on + strandat 4347.494 kb on - strandat 4347.494 kb on - strandat 4347.494 kb on - strandat 4347.501 kb on + strandat 4347.502 kb on - strandat 4347.502 kb on - strandat 4347.502 kb on - strandat 4347.563 kb on + strandat 4348.583 kb on + strand, within Psyr_3661at 4348.583 kb on + strand, within Psyr_3661at 4348.583 kb on + strand, within Psyr_3661at 4348.584 kb on - strand, within Psyr_3661at 4348.584 kb on - strand, within Psyr_3661at 4348.788 kb on - strandat 4348.895 kb on - strandat 4348.960 kb on - strand, within Psyr_3662at 4349.341 kb on - strand, within Psyr_3662at 4349.355 kb on + strand, within Psyr_3662at 4349.384 kb on - strand, within Psyr_3662at 4349.393 kb on - strand, within Psyr_3662at 4349.480 kb on + strandat 4349.481 kb on - strandat 4349.667 kb on + strand, within Psyr_3663at 4349.667 kb on + strand, within Psyr_3663at 4349.667 kb on + strand, within Psyr_3663at 4349.668 kb on - strand, within Psyr_3663at 4349.668 kb on - strand, within Psyr_3663at 4349.788 kb on - strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.25 mg/ml
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4,346,570 + Psyr_3659 0.23 -0.0
4,346,570 + Psyr_3659 0.23 +0.0
4,346,570 + Psyr_3659 0.23 -1.0
4,346,570 + Psyr_3659 0.23 -0.3
4,346,570 + Psyr_3659 0.23 -1.2
4,346,570 + Psyr_3659 0.23 -0.7
4,346,570 + Psyr_3659 0.23 +1.7
4,346,570 + Psyr_3659 0.23 -0.2
4,346,571 - Psyr_3659 0.23 -0.6
4,346,571 - Psyr_3659 0.23 +1.0
4,346,624 + Psyr_3659 0.41 -0.5
4,346,625 - Psyr_3659 0.41 -0.9
4,346,690 + Psyr_3659 0.64 +2.0
4,346,690 + Psyr_3659 0.64 +0.4
4,346,690 + Psyr_3659 0.64 -1.0
4,346,690 + Psyr_3659 0.64 -2.1
4,346,690 + Psyr_3659 0.64 +0.6
4,346,690 + Psyr_3659 0.64 -0.9
4,346,691 - Psyr_3659 0.64 -0.1
4,346,691 - Psyr_3659 0.64 +0.4
4,346,718 + Psyr_3659 0.73 -0.2
4,346,718 + Psyr_3659 0.73 -0.2
4,346,718 + Psyr_3659 0.73 -1.0
4,346,718 + Psyr_3659 0.73 -0.0
4,346,718 + Psyr_3659 0.73 -1.0
4,346,719 - Psyr_3659 0.73 +0.4
4,346,719 - Psyr_3659 0.73 -0.7
4,346,719 - Psyr_3659 0.73 -0.7
4,346,719 - Psyr_3659 0.73 -0.2
4,346,734 + Psyr_3659 0.79 -0.2
4,346,734 + Psyr_3659 0.79 +0.4
4,346,734 + Psyr_3659 0.79 -0.2
4,346,735 - Psyr_3659 0.79 -0.7
4,346,735 - Psyr_3659 0.79 +1.6
4,346,735 - Psyr_3659 0.79 +0.1
4,346,994 - Psyr_3660 0.34 -0.1
4,347,041 + Psyr_3660 0.43 +0.0
4,347,041 + Psyr_3660 0.43 +1.3
4,347,041 + Psyr_3660 0.43 -0.4
4,347,042 - Psyr_3660 0.44 +0.3
4,347,042 - Psyr_3660 0.44 +2.8
4,347,042 - Psyr_3660 0.44 +0.2
4,347,116 + Psyr_3660 0.58 +0.3
4,347,117 - Psyr_3660 0.58 -1.3
4,347,117 - Psyr_3660 0.58 -0.4
4,347,350 + +2.0
4,347,354 + +0.5
4,347,354 + +1.2
4,347,355 - -1.2
4,347,355 - +0.7
4,347,395 + +2.0
4,347,396 - -1.9
4,347,466 + -0.4
4,347,467 - +0.8
4,347,477 - +0.1
4,347,477 - +0.1
4,347,493 + -1.2
4,347,493 + +0.9
4,347,493 + +0.2
4,347,494 - +2.1
4,347,494 - +1.5
4,347,494 - -0.4
4,347,501 + +0.6
4,347,502 - -1.9
4,347,502 - -0.2
4,347,502 - -0.2
4,347,563 + -0.7
4,348,583 + Psyr_3661 0.77 +0.3
4,348,583 + Psyr_3661 0.77 -0.3
4,348,583 + Psyr_3661 0.77 +0.7
4,348,584 - Psyr_3661 0.77 +0.4
4,348,584 - Psyr_3661 0.77 +1.2
4,348,788 - +0.1
4,348,895 - -0.7
4,348,960 - Psyr_3662 0.10 +0.1
4,349,341 - Psyr_3662 0.72 +1.0
4,349,355 + Psyr_3662 0.75 +1.5
4,349,384 - Psyr_3662 0.79 +2.2
4,349,393 - Psyr_3662 0.81 +1.6
4,349,480 + +0.4
4,349,481 - +0.4
4,349,667 + Psyr_3663 0.14 +1.2
4,349,667 + Psyr_3663 0.14 +0.4
4,349,667 + Psyr_3663 0.14 -0.7
4,349,668 - Psyr_3663 0.14 -1.2
4,349,668 - Psyr_3663 0.14 +0.2
4,349,788 - Psyr_3663 0.27 +0.9
4,349,901 + Psyr_3663 0.39 -0.8
4,349,901 + Psyr_3663 0.39 -0.9
4,349,901 + Psyr_3663 0.39 -0.0
4,349,901 + Psyr_3663 0.39 -0.9
4,349,902 - Psyr_3663 0.39 -1.7
4,349,902 - Psyr_3663 0.39 -0.1
4,349,902 - Psyr_3663 0.39 -0.3
4,349,902 - Psyr_3663 0.39 +0.1

Or see this region's nucleotide sequence