Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3426

Experiment: KB with Nitrofurantoin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 0.25 mg/ml
4,089,348	-				+0.0
4,089,440	+				-1.0
4,089,440	+				+0.3
4,089,440	+				+0.6
4,089,440	+				-0.1
4,089,440	+				+0.4
4,089,440	+				+0.0
4,089,441	-				-1.4
4,089,441	-				+0.4
4,089,441	-				+2.0
4,089,464	+				+0.4
4,089,464	+				+0.0
4,089,555	+		Psyr_3425	0.12	+0.8
4,089,555	+		Psyr_3425	0.12	-1.7
4,089,660	-		Psyr_3425	0.26	-1.0
4,089,694	+		Psyr_3425	0.30	-1.9
4,089,751	-				-1.2
4,090,095	+		Psyr_3425	0.85	+0.0
4,090,096	-		Psyr_3425	0.85	+0.4
4,090,099	+		Psyr_3425	0.86	+0.7
4,090,146	+				-0.3
4,090,146	+				+2.0
4,090,146	+				-0.8
4,090,146	+				+2.4
4,090,146	+				+0.2
4,090,147	-				-0.0
4,090,147	-				-0.7
4,090,147	-				-1.8
4,090,147	-				-1.2
4,090,231	+				-0.5
4,090,232	-				-0.6
4,090,410	+		Psyr_3426	0.26	+0.1
4,090,410	+		Psyr_3426	0.26	+0.1
4,090,540	+		Psyr_3426	0.50	-1.7
4,090,540	+		Psyr_3426	0.50	+1.3
4,090,540	+		Psyr_3426	0.50	+1.0
4,090,540	+		Psyr_3426	0.50	-0.3
4,090,540	+		Psyr_3426	0.50	-0.5
4,090,540	+		Psyr_3426	0.50	+0.1
4,090,541	-		Psyr_3426	0.50	+0.8
4,090,541	-		Psyr_3426	0.50	+0.8
4,090,541	-		Psyr_3426	0.50	-0.1
4,090,541	-		Psyr_3426	0.50	-1.5
4,090,541	-		Psyr_3426	0.50	+1.7
4,090,554	+		Psyr_3426	0.52	+0.9
4,090,567	-		Psyr_3426	0.55	+1.0
4,090,578	+		Psyr_3426	0.57	+2.1
4,090,578	+		Psyr_3426	0.57	+0.0
4,090,578	+		Psyr_3426	0.57	+0.7
4,090,705	-		Psyr_3426	0.80	+0.6
4,090,869	+				+0.9
4,090,870	-				-1.7
4,090,918	-				-1.0
4,090,918	-				+0.1
4,090,918	-				-0.4
4,091,097	+				-0.2
4,091,097	+				+0.9
4,091,098	-				+0.3
4,091,142	+				+0.3
4,091,142	+				+0.5
4,091,142	+				-1.0
4,091,143	-				-1.5
4,091,143	-				-1.6
4,091,235	+				-1.2
4,091,235	+				-0.3
4,091,235	+				-0.3
4,091,235	+				-0.6
4,091,236	-				-0.3
4,091,236	-				+0.7
4,091,236	-				+0.3
4,091,245	+				+2.0
4,091,245	+				-0.6
4,091,246	-				+0.0
4,091,470	-		Psyr_3427	0.59	+1.2
4,091,578	+		Psyr_3427	0.86	-2.5
4,091,578	+		Psyr_3427	0.86	-1.6
4,091,578	+		Psyr_3427	0.86	+0.1
4,091,579	-		Psyr_3427	0.86	+0.4
4,091,579	-		Psyr_3427	0.86	-0.0
4,091,621	+				-1.3
4,091,621	+				-1.9
4,091,621	+				-1.3
4,091,622	-				+0.1
4,091,622	-				-0.6
4,091,622	-				+0.1
4,091,796	+		Psyr_3428	0.33	+0.8
4,091,796	+		Psyr_3428	0.33	+0.8
4,091,797	-		Psyr_3428	0.34	-0.7