Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2853

Experiment: KB with Nitrofurantoin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 0.25 mg/ml
3,423,993	+				-0.1
3,423,993	+				-0.2
3,424,083	-				+1.1
3,424,083	-				+0.4
3,424,083	-				-0.6
3,424,129	+				+1.2
3,424,130	-				+0.3
3,424,130	-				+0.1
3,424,130	-				-0.6
3,424,130	-				-0.4
3,424,130	-				+2.6
3,424,155	+				+0.5
3,424,156	-				-2.6
3,424,156	-				+0.1
3,424,192	+				-0.2
3,424,193	-				-0.8
3,424,193	-				-0.6
3,424,253	+				-0.5
3,424,268	+				+1.4
3,424,268	+				-0.1
3,424,268	+				-0.3
3,424,269	-				+0.7
3,424,269	-				+0.2
3,424,269	-				+1.7
3,424,276	-				+0.2
3,424,396	+				-2.0
3,424,397	-		Psyr_2852	0.25	+0.9
3,424,397	-		Psyr_2852	0.25	-1.0
3,424,397	-		Psyr_2852	0.25	+0.0
3,424,477	+		Psyr_2852	0.40	+0.1
3,424,477	+		Psyr_2852	0.40	+0.4
3,424,478	-		Psyr_2852	0.41	-0.2
3,424,478	-		Psyr_2852	0.41	+0.8
3,424,478	-		Psyr_2852	0.41	+0.6
3,424,478	-		Psyr_2852	0.41	-0.3
3,424,533	+		Psyr_2852	0.51	-1.2
3,424,559	+		Psyr_2852	0.56	+1.9
3,424,613	-		Psyr_2852	0.66	+0.4
3,424,774	+				-0.9
3,424,774	+				-0.1
3,424,860	+				-0.2
3,424,860	+				-0.4
3,424,861	-				-1.4
3,424,861	-				-1.0
3,424,861	-				-0.9
3,424,916	-				-0.5
3,424,916	-				-0.6
3,424,943	+				-0.6
3,424,943	+				-2.5
3,424,944	-				-1.1
3,425,058	+		Psyr_2853	0.23	-0.5
3,425,058	+		Psyr_2853	0.23	+0.1
3,425,062	+		Psyr_2853	0.24	+2.7
3,425,062	+		Psyr_2853	0.24	-1.4
3,425,062	+		Psyr_2853	0.24	+0.6
3,425,063	-		Psyr_2853	0.24	-0.6
3,425,063	-		Psyr_2853	0.24	-0.6
3,425,063	-		Psyr_2853	0.24	-0.8
3,425,120	-		Psyr_2853	0.36	+2.9
3,425,133	+		Psyr_2853	0.38	-1.0
3,425,134	-		Psyr_2853	0.39	+0.2
3,425,134	-		Psyr_2853	0.39	-1.0
3,425,171	+		Psyr_2853	0.46	-2.0
3,425,171	+		Psyr_2853	0.46	-1.6
3,425,171	+		Psyr_2853	0.46	+1.9
3,425,171	+		Psyr_2853	0.46	+0.4
3,425,172	-		Psyr_2853	0.46	+1.2
3,425,172	-		Psyr_2853	0.46	-0.2
3,425,176	-		Psyr_2853	0.47	-1.5
3,425,176	-		Psyr_2853	0.47	+0.7
3,425,196	+		Psyr_2853	0.51	-0.6
3,425,197	-		Psyr_2853	0.51	-0.2
3,425,197	-		Psyr_2853	0.51	+0.6
3,425,271	-		Psyr_2853	0.66	-2.8
3,425,341	+		Psyr_2853	0.80	-0.2
3,425,341	+		Psyr_2853	0.80	-2.4
3,425,342	-		Psyr_2853	0.80	+0.1
3,425,407	+				-0.2
3,425,407	+				-2.0
3,425,407	+				-0.1
3,425,407	+				+2.2
3,425,408	-				-1.5
3,425,408	-				+0.4
3,425,456	+				-1.3
3,425,456	+				-1.1
3,425,457	-				-0.3
3,425,457	-				-0.5
3,425,458	+				+0.9
3,425,510	-				-1.2
3,425,551	+				+0.0
3,425,551	+				-1.4
3,425,552	-				+2.7
3,425,608	+				+0.9
3,425,608	+				-0.9
3,425,639	+				-1.3
3,425,693	+				-0.2
3,425,802	+				-2.2
3,425,883	-		Psyr_2854	0.13	-3.5
3,425,885	+		Psyr_2854	0.14	-1.8
3,425,954	+		Psyr_2854	0.21	-2.4
3,425,996	+		Psyr_2854	0.25	-0.8
3,426,109	-		Psyr_2854	0.36	-1.0
3,426,238	-		Psyr_2854	0.49	-1.6
3,426,297	+		Psyr_2854	0.55	-0.7
3,426,297	+		Psyr_2854	0.55	-1.6
3,426,298	-		Psyr_2854	0.56	-0.1
3,426,328	+		Psyr_2854	0.59	-1.5
3,426,373	-		Psyr_2854	0.63	-1.6
3,426,403	-		Psyr_2854	0.66	+0.4