Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2100

Experiment: KB with Nitrofurantoin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2099 and Psyr_2100 overlap by 4 nucleotidesPsyr_2100 and Psyr_2101 are separated by 276 nucleotides Psyr_2099: Psyr_2099 - assimilatory nitrate reductase (NADH) alpha subunit apoprotein, at 2,446,609 to 2,449,329 _2099 Psyr_2100: Psyr_2100 - assimilatory nitrate reductase (NADH) beta subunit, at 2,449,326 to 2,450,555 _2100 Psyr_2101: Psyr_2101 - Protein kinase, at 2,450,832 to 2,452,493 _2101 Position (kb) 2449 2450 2451Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2448.406 kb on - strand, within Psyr_2099at 2448.492 kb on + strand, within Psyr_2099at 2448.558 kb on - strand, within Psyr_2099at 2448.613 kb on + strand, within Psyr_2099at 2448.613 kb on + strand, within Psyr_2099at 2448.613 kb on + strand, within Psyr_2099at 2448.613 kb on + strand, within Psyr_2099at 2448.613 kb on + strand, within Psyr_2099at 2448.613 kb on + strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.614 kb on - strand, within Psyr_2099at 2448.615 kb on + strand, within Psyr_2099at 2448.615 kb on + strand, within Psyr_2099at 2448.615 kb on + strand, within Psyr_2099at 2448.615 kb on + strand, within Psyr_2099at 2448.615 kb on + strand, within Psyr_2099at 2448.616 kb on - strand, within Psyr_2099at 2448.616 kb on - strand, within Psyr_2099at 2448.616 kb on - strandat 2448.616 kb on - strand, within Psyr_2099at 2448.616 kb on - strand, within Psyr_2099at 2448.616 kb on - strand, within Psyr_2099at 2448.783 kb on - strand, within Psyr_2099at 2448.829 kb on - strand, within Psyr_2099at 2448.875 kb on + strand, within Psyr_2099at 2448.965 kb on + strand, within Psyr_2099at 2448.966 kb on - strand, within Psyr_2099at 2448.966 kb on - strand, within Psyr_2099at 2448.968 kb on + strand, within Psyr_2099at 2448.968 kb on + strand, within Psyr_2099at 2448.968 kb on + strand, within Psyr_2099at 2448.968 kb on + strand, within Psyr_2099at 2448.968 kb on + strand, within Psyr_2099at 2448.968 kb on + strand, within Psyr_2099at 2448.999 kb on - strand, within Psyr_2099at 2449.125 kb on - strandat 2449.230 kb on + strandat 2449.230 kb on + strandat 2449.277 kb on + strandat 2449.278 kb on - strandat 2449.420 kb on + strandat 2449.421 kb on - strandat 2449.468 kb on - strand, within Psyr_2100at 2449.496 kb on - strand, within Psyr_2100at 2449.589 kb on + strand, within Psyr_2100at 2449.590 kb on - strand, within Psyr_2100at 2449.732 kb on + strand, within Psyr_2100at 2449.733 kb on - strand, within Psyr_2100at 2449.747 kb on + strand, within Psyr_2100at 2449.748 kb on - strand, within Psyr_2100at 2449.827 kb on + strand, within Psyr_2100at 2449.827 kb on + strand, within Psyr_2100at 2450.031 kb on - strand, within Psyr_2100at 2450.036 kb on + strand, within Psyr_2100at 2450.251 kb on + strand, within Psyr_2100at 2450.251 kb on + strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.429 kb on - strand, within Psyr_2100at 2450.706 kb on - strandat 2450.886 kb on + strandat 2450.887 kb on - strandat 2451.160 kb on + strand, within Psyr_2101at 2451.161 kb on - strand, within Psyr_2101at 2451.163 kb on + strand, within Psyr_2101at 2451.164 kb on - strand, within Psyr_2101at 2451.164 kb on - strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.234 kb on + strand, within Psyr_2101at 2451.235 kb on - strand, within Psyr_2101at 2451.235 kb on - strand, within Psyr_2101at 2451.235 kb on - strand, within Psyr_2101at 2451.235 kb on - strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.236 kb on + strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.237 kb on - strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.238 kb on + strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.239 kb on - strand, within Psyr_2101at 2451.405 kb on + strand, within Psyr_2101at 2451.406 kb on - strand, within Psyr_2101at 2451.505 kb on + strand, within Psyr_2101at 2451.505 kb on + strand, within Psyr_2101at 2451.505 kb on + strand, within Psyr_2101at 2451.506 kb on - strand, within Psyr_2101at 2451.506 kb on - strand, within Psyr_2101at 2451.506 kb on - strand, within Psyr_2101at 2451.508 kb on + strand, within Psyr_2101at 2451.508 kb on + strand, within Psyr_2101at 2451.537 kb on + strand, within Psyr_2101at 2451.537 kb on + strand, within Psyr_2101at 2451.537 kb on + strand, within Psyr_2101at 2451.537 kb on + strand, within Psyr_2101at 2451.538 kb on - strand, within Psyr_2101

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.25 mg/ml
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2,448,406 - Psyr_2099 0.66 -0.1
2,448,492 + Psyr_2099 0.69 +0.7
2,448,558 - Psyr_2099 0.72 -1.3
2,448,613 + Psyr_2099 0.74 +0.2
2,448,613 + Psyr_2099 0.74 +1.5
2,448,613 + Psyr_2099 0.74 -0.1
2,448,613 + Psyr_2099 0.74 -0.0
2,448,613 + Psyr_2099 0.74 +0.3
2,448,613 + Psyr_2099 0.74 +1.0
2,448,614 - Psyr_2099 0.74 -0.2
2,448,614 - Psyr_2099 0.74 +0.4
2,448,614 - Psyr_2099 0.74 -0.0
2,448,614 - Psyr_2099 0.74 -1.1
2,448,614 - Psyr_2099 0.74 -0.7
2,448,614 - Psyr_2099 0.74 +0.9
2,448,614 - Psyr_2099 0.74 -0.1
2,448,614 - Psyr_2099 0.74 -0.1
2,448,614 - Psyr_2099 0.74 +0.7
2,448,614 - Psyr_2099 0.74 +0.5
2,448,614 - Psyr_2099 0.74 +0.8
2,448,614 - Psyr_2099 0.74 -0.9
2,448,615 + Psyr_2099 0.74 -0.7
2,448,615 + Psyr_2099 0.74 +0.1
2,448,615 + Psyr_2099 0.74 +0.4
2,448,615 + Psyr_2099 0.74 +0.4
2,448,615 + Psyr_2099 0.74 +1.9
2,448,616 - Psyr_2099 0.74 -1.7
2,448,616 - Psyr_2099 0.74 -0.2
2,448,616 - -0.7
2,448,616 - Psyr_2099 0.74 +2.6
2,448,616 - Psyr_2099 0.74 -0.9
2,448,616 - Psyr_2099 0.74 -1.4
2,448,783 - Psyr_2099 0.80 -2.5
2,448,829 - Psyr_2099 0.82 -0.6
2,448,875 + Psyr_2099 0.83 -0.7
2,448,965 + Psyr_2099 0.87 +0.0
2,448,966 - Psyr_2099 0.87 +0.6
2,448,966 - Psyr_2099 0.87 +0.9
2,448,968 + Psyr_2099 0.87 +0.6
2,448,968 + Psyr_2099 0.87 -0.7
2,448,968 + Psyr_2099 0.87 +0.9
2,448,968 + Psyr_2099 0.87 +2.4
2,448,968 + Psyr_2099 0.87 -2.3
2,448,968 + Psyr_2099 0.87 -0.9
2,448,999 - Psyr_2099 0.88 -0.2
2,449,125 - +0.1
2,449,230 + +3.7
2,449,230 + -0.2
2,449,277 + +0.1
2,449,278 - +1.1
2,449,420 + +0.3
2,449,421 - -1.2
2,449,468 - Psyr_2100 0.12 +0.9
2,449,496 - Psyr_2100 0.14 +0.7
2,449,589 + Psyr_2100 0.21 -0.3
2,449,590 - Psyr_2100 0.21 -2.0
2,449,732 + Psyr_2100 0.33 -0.3
2,449,733 - Psyr_2100 0.33 +0.3
2,449,747 + Psyr_2100 0.34 +0.1
2,449,748 - Psyr_2100 0.34 +1.4
2,449,827 + Psyr_2100 0.41 +1.2
2,449,827 + Psyr_2100 0.41 +0.9
2,450,031 - Psyr_2100 0.57 +0.1
2,450,036 + Psyr_2100 0.58 -0.3
2,450,251 + Psyr_2100 0.75 +0.4
2,450,251 + Psyr_2100 0.75 +0.9
2,450,429 - Psyr_2100 0.90 +0.5
2,450,429 - Psyr_2100 0.90 +1.0
2,450,429 - Psyr_2100 0.90 -0.8
2,450,429 - Psyr_2100 0.90 +0.3
2,450,429 - Psyr_2100 0.90 +0.3
2,450,429 - Psyr_2100 0.90 -0.9
2,450,429 - Psyr_2100 0.90 +0.0
2,450,429 - Psyr_2100 0.90 -2.6
2,450,706 - -0.2
2,450,886 + +0.1
2,450,887 - +0.5
2,451,160 + Psyr_2101 0.20 +0.4
2,451,161 - Psyr_2101 0.20 -0.9
2,451,163 + Psyr_2101 0.20 -0.0
2,451,164 - Psyr_2101 0.20 +0.9
2,451,164 - Psyr_2101 0.20 -0.8
2,451,234 + Psyr_2101 0.24 +0.1
2,451,234 + Psyr_2101 0.24 -0.8
2,451,234 + Psyr_2101 0.24 +1.3
2,451,234 + Psyr_2101 0.24 +0.5
2,451,234 + Psyr_2101 0.24 -0.2
2,451,234 + Psyr_2101 0.24 +1.0
2,451,234 + Psyr_2101 0.24 +1.3
2,451,234 + Psyr_2101 0.24 +1.2
2,451,234 + Psyr_2101 0.24 -0.0
2,451,234 + Psyr_2101 0.24 +0.1
2,451,234 + Psyr_2101 0.24 +0.4
2,451,235 - Psyr_2101 0.24 -0.3
2,451,235 - Psyr_2101 0.24 +2.3
2,451,235 - Psyr_2101 0.24 +0.5
2,451,235 - Psyr_2101 0.24 +0.6
2,451,236 + Psyr_2101 0.24 +0.3
2,451,236 + Psyr_2101 0.24 -0.4
2,451,236 + Psyr_2101 0.24 +1.1
2,451,236 + Psyr_2101 0.24 -0.9
2,451,236 + Psyr_2101 0.24 -0.7
2,451,236 + Psyr_2101 0.24 +0.6
2,451,236 + Psyr_2101 0.24 -0.3
2,451,237 - Psyr_2101 0.24 -0.0
2,451,237 - Psyr_2101 0.24 +0.4
2,451,237 - Psyr_2101 0.24 +0.5
2,451,237 - Psyr_2101 0.24 -1.1
2,451,237 - Psyr_2101 0.24 -1.3
2,451,237 - Psyr_2101 0.24 +1.0
2,451,238 + Psyr_2101 0.24 -0.4
2,451,238 + Psyr_2101 0.24 +2.3
2,451,238 + Psyr_2101 0.24 -0.1
2,451,238 + Psyr_2101 0.24 -0.1
2,451,238 + Psyr_2101 0.24 +0.2
2,451,238 + Psyr_2101 0.24 +1.1
2,451,238 + Psyr_2101 0.24 +0.3
2,451,238 + Psyr_2101 0.24 +0.9
2,451,238 + Psyr_2101 0.24 -1.2
2,451,238 + Psyr_2101 0.24 +1.2
2,451,238 + Psyr_2101 0.24 -0.9
2,451,238 + Psyr_2101 0.24 -0.4
2,451,238 + Psyr_2101 0.24 -0.3
2,451,238 + Psyr_2101 0.24 +1.1
2,451,238 + Psyr_2101 0.24 -0.2
2,451,238 + Psyr_2101 0.24 -0.1
2,451,239 - Psyr_2101 0.24 -1.5
2,451,239 - Psyr_2101 0.24 -0.9
2,451,239 - Psyr_2101 0.24 +0.5
2,451,239 - Psyr_2101 0.24 +0.9
2,451,239 - Psyr_2101 0.24 +0.3
2,451,239 - Psyr_2101 0.24 -1.6
2,451,239 - Psyr_2101 0.24 +1.3
2,451,239 - Psyr_2101 0.24 +0.4
2,451,239 - Psyr_2101 0.24 +0.5
2,451,239 - Psyr_2101 0.24 -1.7
2,451,239 - Psyr_2101 0.24 -0.8
2,451,239 - Psyr_2101 0.24 -0.3
2,451,239 - Psyr_2101 0.24 +0.0
2,451,239 - Psyr_2101 0.24 +0.9
2,451,239 - Psyr_2101 0.24 -0.2
2,451,239 - Psyr_2101 0.24 -0.3
2,451,405 + Psyr_2101 0.34 +0.9
2,451,406 - Psyr_2101 0.35 +0.2
2,451,505 + Psyr_2101 0.40 +0.1
2,451,505 + Psyr_2101 0.40 -0.5
2,451,505 + Psyr_2101 0.40 +0.9
2,451,506 - Psyr_2101 0.41 +0.1
2,451,506 - Psyr_2101 0.41 -0.1
2,451,506 - Psyr_2101 0.41 +1.3
2,451,508 + Psyr_2101 0.41 +1.0
2,451,508 + Psyr_2101 0.41 -0.1
2,451,537 + Psyr_2101 0.42 +0.3
2,451,537 + Psyr_2101 0.42 -0.4
2,451,537 + Psyr_2101 0.42 +2.5
2,451,537 + Psyr_2101 0.42 -0.4
2,451,538 - Psyr_2101 0.42 -1.5

Or see this region's nucleotide sequence