Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1891

Experiment: KB with Nitrofurantoin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 0.25 mg/ml
2,160,444	+				+0.7
2,160,444	+				-0.2
2,160,444	+				+0.3
2,160,444	+				+0.8
2,160,444	+				+0.2
2,160,445	-				-0.8
2,160,494	-				+0.1
2,160,508	+				-1.2
2,160,508	+				-1.1
2,160,508	+				-0.8
2,160,508	+				-0.6
2,160,509	-				+0.3
2,160,553	+				+1.3
2,160,554	-				-0.1
2,160,554	-				+1.1
2,160,554	-				-0.2
2,160,585	+				+0.5
2,160,585	+				-0.2
2,160,585	+				+1.9
2,160,585	+				-0.0
2,160,585	+				+0.0
2,160,585	+				+1.1
2,160,585	+				+0.5
2,160,585	+				-0.7
2,160,585	+				-0.9
2,160,586	-				-0.4
2,160,586	-				+0.2
2,160,586	-				+1.8
2,160,586	-				-1.2
2,160,586	-				-0.2
2,160,589	+				-0.4
2,160,589	+				+0.7
2,160,589	+				-1.5
2,160,589	+				+0.9
2,160,589	+				+0.1
2,160,590	-				-0.0
2,160,590	-				-2.0
2,160,590	-				+1.9
2,160,590	-				-0.7
2,160,590	-				+0.5
2,160,590	-				-0.0
2,160,590	-				+1.3
2,160,634	+				+0.2
2,160,634	+				-0.2
2,160,636	+				+0.6
2,160,637	-				-0.1
2,160,680	-		Psyr_1890	0.16	+1.0
2,160,690	+		Psyr_1890	0.18	+0.5
2,160,691	-		Psyr_1890	0.18	-0.1
2,160,725	+		Psyr_1890	0.24	-1.5
2,160,725	+		Psyr_1890	0.24	-0.2
2,160,725	+		Psyr_1890	0.24	-0.5
2,160,726	-		Psyr_1890	0.24	-0.2
2,160,726	-		Psyr_1890	0.24	-1.4
2,160,726	-		Psyr_1890	0.24	-0.0
2,160,744	+		Psyr_1890	0.27	+0.4
2,160,847	+		Psyr_1890	0.44	+2.3
2,160,854	+		Psyr_1890	0.45	-0.5
2,160,874	+		Psyr_1890	0.49	+2.0
2,160,874	+		Psyr_1890	0.49	-0.5
2,160,874	+		Psyr_1890	0.49	-0.7
2,160,874	+		Psyr_1890	0.49	+0.2
2,160,875	-		Psyr_1890	0.49	+2.3
2,160,875	-		Psyr_1890	0.49	-0.6
2,160,875	-		Psyr_1890	0.49	+0.0
2,160,875	-		Psyr_1890	0.49	+0.7
2,160,897	+		Psyr_1890	0.52	-0.6
2,160,898	-		Psyr_1890	0.53	-0.4
2,160,898	-		Psyr_1890	0.53	-0.3
2,160,950	-		Psyr_1890	0.61	+0.5
2,160,959	-		Psyr_1890	0.63	+1.1
2,160,964	+		Psyr_1890	0.64	-0.4
2,160,964	+		Psyr_1890	0.64	+1.0
2,160,964	+		Psyr_1890	0.64	-1.1
2,160,964	+		Psyr_1890	0.64	-0.9
2,160,964	+		Psyr_1890	0.64	-0.2
2,160,964	+		Psyr_1890	0.64	+1.1
2,160,964	+		Psyr_1890	0.64	-0.8
2,160,964	+		Psyr_1890	0.64	-1.2
2,160,964	+		Psyr_1890	0.64	-0.0
2,160,965	-		Psyr_1890	0.64	+0.3
2,160,965	-		Psyr_1890	0.64	+1.0
2,160,965	-		Psyr_1890	0.64	-1.2
2,160,965	-		Psyr_1890	0.64	+0.3
2,160,965	-		Psyr_1890	0.64	-0.0
2,160,965	-		Psyr_1890	0.64	+0.8
2,160,965	-		Psyr_1890	0.64	+1.8
2,160,965	-		Psyr_1890	0.64	+1.1
2,160,965	-		Psyr_1890	0.64	-2.7
2,160,965	-		Psyr_1890	0.64	-0.8
2,160,965	-		Psyr_1890	0.64	-1.5
2,160,965	-		Psyr_1890	0.64	-0.7
2,160,965	-		Psyr_1890	0.64	+0.3
2,160,966	+		Psyr_1890	0.64	+1.0
2,160,967	-		Psyr_1890	0.64	+0.6
2,160,967	-		Psyr_1890	0.64	+0.5
2,160,998	+		Psyr_1890	0.69	-2.4
2,160,998	+		Psyr_1890	0.69	-0.1
2,161,007	+		Psyr_1890	0.71	-1.6
2,161,008	-		Psyr_1890	0.71	+0.3
2,161,165	+				+0.9
2,161,229	+				+0.2
2,161,229	+				+0.7
2,161,229	+				-0.8
2,161,229	+				+1.3
2,161,229	+				+2.7
2,161,229	+				-1.2
2,161,230	-				-1.7
2,161,230	-				-0.8
2,161,230	-				-0.4
2,161,230	-				+0.5
2,161,230	-				-0.7
2,161,230	-				-1.2
2,161,240	-				+0.1
2,161,290	+				+0.9
2,161,290	+				+0.1
2,161,291	-				+0.0
2,161,291	-				-0.3
2,161,291	-				+1.2
2,161,316	+				-0.4
2,161,317	-				-0.2
2,161,317	-				+0.1
2,161,317	-				+0.8
2,161,317	-				-1.1
2,161,350	+				+0.3
2,161,350	+				+0.8
2,161,350	+				-0.8
2,161,351	-				-1.5
2,161,351	-				+0.9
2,161,361	+				-0.8
2,161,361	+				-0.2
2,161,361	+				-0.7
2,161,361	+				-0.3
2,161,361	+				+0.0
2,161,361	+				+0.6
2,161,361	+				-0.6
2,161,362	-				-0.2
2,161,362	-				+1.7
2,161,362	-				-0.4
2,161,362	-				-0.1
2,161,362	-				-0.2
2,161,366	-				-0.1
2,161,366	-				+0.3
2,161,366	-				+0.3
2,161,512	+		Psyr_1891	0.37	-0.2
2,161,512	+		Psyr_1891	0.37	-0.5
2,161,512	+		Psyr_1891	0.37	-0.1
2,161,512	+		Psyr_1891	0.37	+1.5
2,161,513	-		Psyr_1891	0.38	-0.9
2,161,602	+		Psyr_1891	0.67	-0.4
2,161,606	-		Psyr_1891	0.68	-0.1
2,161,606	-		Psyr_1891	0.68	-0.5
2,161,612	+		Psyr_1891	0.70	-0.3
2,161,612	+		Psyr_1891	0.70	-0.0
2,161,613	-		Psyr_1891	0.71	-0.3
2,161,613	-		Psyr_1891	0.71	-0.5
2,161,655	-		Psyr_1891	0.84	-1.0
2,161,760	+				+0.2
2,161,760	+				-0.1
2,161,760	+				+0.2
2,161,760	+				+1.2
2,161,760	+				-0.1
2,161,761	-				-0.3
2,161,761	-				+1.0
2,161,761	-				+0.6
2,161,805	+				-1.3
2,161,899	+				-3.2
2,162,221	+				+1.7
2,162,222	-				-0.3
2,162,222	-				-0.2
2,162,222	-				-1.4
2,162,528	+		Psyr_1892	0.47	-0.7
2,162,528	+		Psyr_1892	0.47	-0.7
2,162,528	+		Psyr_1892	0.47	+0.9
2,162,528	+		Psyr_1892	0.47	+1.9
2,162,528	+		Psyr_1892	0.47	-0.1
2,162,528	+		Psyr_1892	0.47	-0.2
2,162,529	-		Psyr_1892	0.47	-1.8
2,162,529	-		Psyr_1892	0.47	-1.0
2,162,529	-		Psyr_1892	0.47	+0.2
2,162,529	-		Psyr_1892	0.47	+0.5