Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1699

Experiment: KB with Nitrofurantoin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1698 and Psyr_1699 are separated by 516 nucleotidesPsyr_1699 and Psyr_1700 are separated by 170 nucleotides Psyr_1698: Psyr_1698 - Glutathionylspermidine synthase, at 1,904,792 to 1,905,949 _1698 Psyr_1699: Psyr_1699 - Protein of unknown function DUF1329, at 1,906,466 to 1,907,821 _1699 Psyr_1700: Psyr_1700 - Glycosyl hydrolase, BNR repeat protein, at 1,907,992 to 1,909,101 _1700 Position (kb) 1906 1907 1908Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1905.499 kb on + strand, within Psyr_1698at 1905.500 kb on - strand, within Psyr_1698at 1905.698 kb on + strand, within Psyr_1698at 1905.800 kb on + strand, within Psyr_1698at 1905.830 kb on + strand, within Psyr_1698at 1905.830 kb on + strand, within Psyr_1698at 1905.830 kb on + strandat 1905.830 kb on + strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.991 kb on + strandat 1905.991 kb on + strandat 1905.991 kb on + strandat 1905.991 kb on + strandat 1905.991 kb on + strandat 1905.991 kb on + strandat 1905.992 kb on - strandat 1905.992 kb on - strandat 1906.007 kb on - strandat 1906.019 kb on + strandat 1906.020 kb on - strandat 1906.020 kb on - strandat 1906.021 kb on + strandat 1906.045 kb on - strandat 1906.045 kb on - strandat 1906.045 kb on - strandat 1906.045 kb on - strandat 1906.055 kb on - strandat 1906.140 kb on + strandat 1906.145 kb on + strandat 1906.145 kb on + strandat 1906.146 kb on - strandat 1906.146 kb on - strandat 1906.147 kb on + strandat 1906.147 kb on + strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.149 kb on + strandat 1906.149 kb on + strandat 1906.150 kb on - strandat 1906.150 kb on - strandat 1906.150 kb on - strandat 1906.150 kb on - strandat 1906.195 kb on + strandat 1906.275 kb on - strandat 1906.283 kb on - strandat 1906.283 kb on - strandat 1906.295 kb on + strandat 1906.315 kb on + strandat 1906.315 kb on + strandat 1906.316 kb on - strandat 1906.384 kb on + strandat 1906.398 kb on + strandat 1906.399 kb on - strandat 1906.408 kb on + strandat 1906.409 kb on - strandat 1906.588 kb on + strandat 1906.802 kb on + strand, within Psyr_1699at 1906.842 kb on - strand, within Psyr_1699at 1906.842 kb on - strand, within Psyr_1699at 1906.988 kb on + strand, within Psyr_1699at 1907.002 kb on + strand, within Psyr_1699at 1907.002 kb on + strand, within Psyr_1699at 1907.003 kb on - strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.078 kb on + strand, within Psyr_1699at 1907.079 kb on - strand, within Psyr_1699at 1907.123 kb on + strand, within Psyr_1699at 1907.123 kb on + strand, within Psyr_1699at 1907.123 kb on + strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.124 kb on - strand, within Psyr_1699at 1907.126 kb on + strand, within Psyr_1699at 1907.126 kb on + strand, within Psyr_1699at 1907.126 kb on + strand, within Psyr_1699at 1907.126 kb on + strand, within Psyr_1699at 1907.127 kb on - strand, within Psyr_1699at 1907.127 kb on - strand, within Psyr_1699at 1907.127 kb on - strand, within Psyr_1699at 1907.127 kb on - strand, within Psyr_1699at 1907.225 kb on + strand, within Psyr_1699at 1907.225 kb on + strand, within Psyr_1699at 1907.225 kb on + strand, within Psyr_1699at 1907.226 kb on - strand, within Psyr_1699at 1907.226 kb on - strand, within Psyr_1699at 1907.226 kb on - strand, within Psyr_1699at 1907.247 kb on + strand, within Psyr_1699at 1907.270 kb on + strand, within Psyr_1699at 1907.271 kb on - strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.381 kb on + strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.382 kb on - strand, within Psyr_1699at 1907.383 kb on + strand, within Psyr_1699at 1907.383 kb on + strand, within Psyr_1699at 1907.384 kb on - strand, within Psyr_1699at 1907.391 kb on - strand, within Psyr_1699at 1907.423 kb on - strand, within Psyr_1699at 1907.436 kb on + strand, within Psyr_1699at 1907.437 kb on - strand, within Psyr_1699at 1907.445 kb on + strand, within Psyr_1699at 1907.465 kb on + strand, within Psyr_1699at 1907.467 kb on + strand, within Psyr_1699at 1907.534 kb on + strand, within Psyr_1699at 1907.535 kb on - strand, within Psyr_1699at 1907.535 kb on - strand, within Psyr_1699at 1907.552 kb on + strand, within Psyr_1699at 1907.634 kb on - strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.645 kb on + strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.646 kb on - strand, within Psyr_1699at 1907.649 kb on - strand, within Psyr_1699at 1907.649 kb on - strand, within Psyr_1699at 1907.858 kb on - strandat 1907.949 kb on + strandat 1907.950 kb on - strandat 1908.035 kb on + strandat 1908.035 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.038 kb on + strandat 1908.039 kb on - strandat 1908.039 kb on - strandat 1908.089 kb on - strandat 1908.089 kb on - strandat 1908.114 kb on + strand, within Psyr_1700at 1908.115 kb on - strand, within Psyr_1700at 1908.193 kb on + strand, within Psyr_1700at 1908.194 kb on - strand, within Psyr_1700at 1908.285 kb on + strand, within Psyr_1700at 1908.286 kb on - strand, within Psyr_1700at 1908.286 kb on - strand, within Psyr_1700at 1908.410 kb on + strand, within Psyr_1700at 1908.411 kb on - strand, within Psyr_1700at 1908.411 kb on - strand, within Psyr_1700at 1908.607 kb on + strand, within Psyr_1700at 1908.607 kb on + strand, within Psyr_1700at 1908.781 kb on + strand, within Psyr_1700

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.25 mg/ml
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1,905,499 + Psyr_1698 0.61 -0.1
1,905,500 - Psyr_1698 0.61 +0.6
1,905,698 + Psyr_1698 0.78 +0.3
1,905,800 + Psyr_1698 0.87 +0.2
1,905,830 + Psyr_1698 0.90 -0.5
1,905,830 + Psyr_1698 0.90 +1.3
1,905,830 + +0.1
1,905,830 + Psyr_1698 0.90 +0.1
1,905,831 - Psyr_1698 0.90 -0.5
1,905,831 - Psyr_1698 0.90 +2.6
1,905,831 - Psyr_1698 0.90 +0.1
1,905,831 - Psyr_1698 0.90 +0.1
1,905,831 - Psyr_1698 0.90 +0.7
1,905,831 - Psyr_1698 0.90 +0.3
1,905,991 + +0.8
1,905,991 + +0.1
1,905,991 + -1.6
1,905,991 + +0.4
1,905,991 + +1.4
1,905,991 + +0.2
1,905,992 - +0.4
1,905,992 - -0.6
1,906,007 - -0.0
1,906,019 + +0.1
1,906,020 - -0.8
1,906,020 - -0.7
1,906,021 + -0.6
1,906,045 - +0.9
1,906,045 - +0.7
1,906,045 - +1.8
1,906,045 - +0.9
1,906,055 - +0.3
1,906,140 + +3.9
1,906,145 + +0.9
1,906,145 + -0.1
1,906,146 - -0.8
1,906,146 - +0.4
1,906,147 + -0.6
1,906,147 + +0.9
1,906,148 - -2.4
1,906,148 - +0.5
1,906,148 - +0.6
1,906,148 - -0.6
1,906,148 - -1.2
1,906,149 + +0.7
1,906,149 + +0.2
1,906,150 - -0.2
1,906,150 - +0.4
1,906,150 - -0.9
1,906,150 - +1.0
1,906,195 + -0.0
1,906,275 - -0.4
1,906,283 - +1.5
1,906,283 - -0.3
1,906,295 + -1.9
1,906,315 + +0.2
1,906,315 + -1.1
1,906,316 - -0.4
1,906,384 + +0.7
1,906,398 + -0.8
1,906,399 - +1.5
1,906,408 + -0.3
1,906,409 - +1.0
1,906,588 + -1.1
1,906,802 + Psyr_1699 0.25 +0.6
1,906,842 - Psyr_1699 0.28 +0.4
1,906,842 - Psyr_1699 0.28 +1.0
1,906,988 + Psyr_1699 0.38 +0.2
1,907,002 + Psyr_1699 0.40 -0.5
1,907,002 + Psyr_1699 0.40 -0.3
1,907,003 - Psyr_1699 0.40 +1.2
1,907,078 + Psyr_1699 0.45 +0.9
1,907,078 + Psyr_1699 0.45 +1.2
1,907,078 + Psyr_1699 0.45 +1.3
1,907,078 + Psyr_1699 0.45 -0.6
1,907,078 + Psyr_1699 0.45 +1.0
1,907,078 + Psyr_1699 0.45 -1.0
1,907,079 - Psyr_1699 0.45 +0.1
1,907,123 + Psyr_1699 0.48 -0.7
1,907,123 + Psyr_1699 0.48 +0.4
1,907,123 + Psyr_1699 0.48 +0.6
1,907,124 - Psyr_1699 0.49 +1.7
1,907,124 - Psyr_1699 0.49 +0.2
1,907,124 - Psyr_1699 0.49 +0.2
1,907,124 - Psyr_1699 0.49 -1.8
1,907,126 + Psyr_1699 0.49 +0.3
1,907,126 + Psyr_1699 0.49 +1.0
1,907,126 + Psyr_1699 0.49 +0.7
1,907,126 + Psyr_1699 0.49 +0.5
1,907,127 - Psyr_1699 0.49 -1.8
1,907,127 - Psyr_1699 0.49 +0.9
1,907,127 - Psyr_1699 0.49 +0.8
1,907,127 - Psyr_1699 0.49 +0.8
1,907,225 + Psyr_1699 0.56 -0.2
1,907,225 + Psyr_1699 0.56 +1.0
1,907,225 + Psyr_1699 0.56 +1.0
1,907,226 - Psyr_1699 0.56 +0.1
1,907,226 - Psyr_1699 0.56 +0.0
1,907,226 - Psyr_1699 0.56 +2.4
1,907,247 + Psyr_1699 0.58 +0.1
1,907,270 + Psyr_1699 0.59 -0.6
1,907,271 - Psyr_1699 0.59 +1.1
1,907,381 + Psyr_1699 0.67 -0.6
1,907,381 + Psyr_1699 0.67 -0.3
1,907,381 + Psyr_1699 0.67 +0.9
1,907,381 + Psyr_1699 0.67 +1.6
1,907,381 + Psyr_1699 0.67 +0.7
1,907,381 + Psyr_1699 0.67 -0.1
1,907,381 + Psyr_1699 0.67 +0.0
1,907,382 - Psyr_1699 0.68 -0.5
1,907,382 - Psyr_1699 0.68 -0.0
1,907,382 - Psyr_1699 0.68 -0.8
1,907,382 - Psyr_1699 0.68 +0.5
1,907,382 - Psyr_1699 0.68 +0.9
1,907,382 - Psyr_1699 0.68 +0.6
1,907,382 - Psyr_1699 0.68 +0.8
1,907,382 - Psyr_1699 0.68 +0.6
1,907,382 - Psyr_1699 0.68 +3.0
1,907,383 + Psyr_1699 0.68 +0.9
1,907,383 + Psyr_1699 0.68 -0.4
1,907,384 - Psyr_1699 0.68 +0.1
1,907,391 - Psyr_1699 0.68 +0.2
1,907,423 - Psyr_1699 0.71 +0.9
1,907,436 + Psyr_1699 0.72 -0.1
1,907,437 - Psyr_1699 0.72 +0.3
1,907,445 + Psyr_1699 0.72 +0.4
1,907,465 + Psyr_1699 0.74 +0.8
1,907,467 + Psyr_1699 0.74 -0.7
1,907,534 + Psyr_1699 0.79 -1.4
1,907,535 - Psyr_1699 0.79 +0.5
1,907,535 - Psyr_1699 0.79 +1.1
1,907,552 + Psyr_1699 0.80 +0.7
1,907,634 - Psyr_1699 0.86 +0.6
1,907,645 + Psyr_1699 0.87 -0.3
1,907,645 + Psyr_1699 0.87 +1.9
1,907,645 + Psyr_1699 0.87 -0.1
1,907,645 + Psyr_1699 0.87 +1.7
1,907,645 + Psyr_1699 0.87 -0.1
1,907,645 + Psyr_1699 0.87 +0.4
1,907,645 + Psyr_1699 0.87 +0.2
1,907,645 + Psyr_1699 0.87 +1.0
1,907,646 - Psyr_1699 0.87 +1.4
1,907,646 - Psyr_1699 0.87 +0.7
1,907,646 - Psyr_1699 0.87 +0.1
1,907,646 - Psyr_1699 0.87 +1.4
1,907,649 - Psyr_1699 0.87 -0.9
1,907,649 - Psyr_1699 0.87 -0.5
1,907,858 - -0.2
1,907,949 + +0.3
1,907,950 - +0.6
1,908,035 + -0.8
1,908,035 + +1.5
1,908,038 + -0.0
1,908,038 + +0.7
1,908,038 + +1.1
1,908,038 + +0.9
1,908,039 - +0.5
1,908,039 - -0.9
1,908,089 - -0.3
1,908,089 - +0.1
1,908,114 + Psyr_1700 0.11 -1.1
1,908,115 - Psyr_1700 0.11 +0.1
1,908,193 + Psyr_1700 0.18 +0.9
1,908,194 - Psyr_1700 0.18 +0.1
1,908,285 + Psyr_1700 0.26 -1.2
1,908,286 - Psyr_1700 0.26 -0.9
1,908,286 - Psyr_1700 0.26 -0.2
1,908,410 + Psyr_1700 0.38 +0.2
1,908,411 - Psyr_1700 0.38 -0.8
1,908,411 - Psyr_1700 0.38 +0.8
1,908,607 + Psyr_1700 0.55 +0.4
1,908,607 + Psyr_1700 0.55 -0.1
1,908,781 + Psyr_1700 0.71 -0.1

Or see this region's nucleotide sequence