Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1300

Experiment: KB with Nitrofurantoin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1299 and Psyr_1300 are separated by 63 nucleotidesPsyr_1300 and Psyr_1301 are separated by 298 nucleotides Psyr_1299: Psyr_1299 - NADH:flavin oxidoreductase/NADH oxidase, at 1,467,821 to 1,468,927 _1299 Psyr_1300: Psyr_1300 - PAS/PAC sensor hybrid histidine kinase, at 1,468,991 to 1,471,078 _1300 Psyr_1301: Psyr_1301 - Protein of unknown function DUF533, at 1,471,377 to 1,472,123 _1301 Position (kb) 1468 1469 1470 1471 1472Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1468.072 kb on + strand, within Psyr_1299at 1468.073 kb on - strand, within Psyr_1299at 1468.073 kb on - strand, within Psyr_1299at 1468.177 kb on + strand, within Psyr_1299at 1468.178 kb on - strand, within Psyr_1299at 1468.364 kb on + strand, within Psyr_1299at 1468.364 kb on + strand, within Psyr_1299at 1468.364 kb on + strand, within Psyr_1299at 1468.415 kb on + strand, within Psyr_1299at 1468.416 kb on - strand, within Psyr_1299at 1468.416 kb on - strand, within Psyr_1299at 1468.447 kb on + strand, within Psyr_1299at 1468.608 kb on + strand, within Psyr_1299at 1468.608 kb on + strand, within Psyr_1299at 1468.609 kb on - strand, within Psyr_1299at 1468.609 kb on - strand, within Psyr_1299at 1468.609 kb on - strand, within Psyr_1299at 1468.609 kb on - strand, within Psyr_1299at 1468.609 kb on - strand, within Psyr_1299at 1468.609 kb on - strand, within Psyr_1299at 1468.609 kb on - strand, within Psyr_1299at 1468.609 kb on - strand, within Psyr_1299at 1468.621 kb on + strand, within Psyr_1299at 1469.281 kb on + strand, within Psyr_1300at 1469.283 kb on + strand, within Psyr_1300at 1469.283 kb on + strand, within Psyr_1300at 1469.283 kb on + strand, within Psyr_1300at 1469.283 kb on + strand, within Psyr_1300at 1469.283 kb on + strand, within Psyr_1300at 1469.284 kb on - strand, within Psyr_1300at 1469.284 kb on - strand, within Psyr_1300at 1469.297 kb on + strand, within Psyr_1300at 1469.297 kb on + strand, within Psyr_1300at 1469.298 kb on - strand, within Psyr_1300at 1469.481 kb on + strand, within Psyr_1300at 1469.481 kb on + strand, within Psyr_1300at 1469.482 kb on - strand, within Psyr_1300at 1469.640 kb on + strand, within Psyr_1300at 1469.641 kb on - strand, within Psyr_1300at 1469.846 kb on + strand, within Psyr_1300at 1469.847 kb on - strand, within Psyr_1300at 1469.899 kb on + strand, within Psyr_1300at 1469.900 kb on - strand, within Psyr_1300at 1469.900 kb on - strand, within Psyr_1300at 1469.994 kb on + strand, within Psyr_1300at 1469.994 kb on + strand, within Psyr_1300at 1469.995 kb on - strand, within Psyr_1300at 1470.255 kb on + strand, within Psyr_1300at 1470.256 kb on - strand, within Psyr_1300at 1470.256 kb on - strand, within Psyr_1300at 1470.479 kb on + strand, within Psyr_1300at 1470.479 kb on + strand, within Psyr_1300at 1470.751 kb on - strand, within Psyr_1300at 1470.877 kb on - strandat 1470.921 kb on + strandat 1470.921 kb on + strandat 1470.921 kb on + strandat 1470.921 kb on + strandat 1470.922 kb on - strandat 1470.922 kb on - strandat 1470.922 kb on - strandat 1470.922 kb on - strandat 1471.125 kb on + strandat 1471.125 kb on + strandat 1471.126 kb on - strandat 1471.126 kb on - strandat 1471.171 kb on - strandat 1471.171 kb on - strandat 1471.180 kb on + strandat 1471.181 kb on - strandat 1471.181 kb on - strandat 1471.364 kb on + strandat 1471.364 kb on + strandat 1471.364 kb on + strandat 1471.365 kb on - strandat 1471.383 kb on - strandat 1471.518 kb on - strand, within Psyr_1301at 1471.518 kb on - strand, within Psyr_1301at 1471.651 kb on - strand, within Psyr_1301at 1471.683 kb on + strand, within Psyr_1301at 1471.683 kb on + strand, within Psyr_1301at 1471.684 kb on - strand, within Psyr_1301at 1471.692 kb on + strand, within Psyr_1301at 1471.692 kb on + strand, within Psyr_1301at 1471.692 kb on + strand, within Psyr_1301at 1471.693 kb on - strand, within Psyr_1301at 1471.782 kb on - strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strandat 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strand, within Psyr_1301at 1471.989 kb on + strandat 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1471.990 kb on - strand, within Psyr_1301at 1472.040 kb on + strand, within Psyr_1301

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.25 mg/ml
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1,468,072 + Psyr_1299 0.23 -1.2
1,468,073 - Psyr_1299 0.23 +0.4
1,468,073 - Psyr_1299 0.23 +2.2
1,468,177 + Psyr_1299 0.32 +0.6
1,468,178 - Psyr_1299 0.32 -0.7
1,468,364 + Psyr_1299 0.49 -0.3
1,468,364 + Psyr_1299 0.49 -0.0
1,468,364 + Psyr_1299 0.49 -0.0
1,468,415 + Psyr_1299 0.54 +0.7
1,468,416 - Psyr_1299 0.54 +0.2
1,468,416 - Psyr_1299 0.54 -0.2
1,468,447 + Psyr_1299 0.57 +0.2
1,468,608 + Psyr_1299 0.71 -0.7
1,468,608 + Psyr_1299 0.71 -1.3
1,468,609 - Psyr_1299 0.71 +1.3
1,468,609 - Psyr_1299 0.71 +0.7
1,468,609 - Psyr_1299 0.71 +0.3
1,468,609 - Psyr_1299 0.71 -0.3
1,468,609 - Psyr_1299 0.71 +0.7
1,468,609 - Psyr_1299 0.71 +0.2
1,468,609 - Psyr_1299 0.71 +0.8
1,468,609 - Psyr_1299 0.71 +0.3
1,468,621 + Psyr_1299 0.72 -1.4
1,469,281 + Psyr_1300 0.14 +1.1
1,469,283 + Psyr_1300 0.14 -2.4
1,469,283 + Psyr_1300 0.14 +1.3
1,469,283 + Psyr_1300 0.14 +0.6
1,469,283 + Psyr_1300 0.14 -0.4
1,469,283 + Psyr_1300 0.14 -1.8
1,469,284 - Psyr_1300 0.14 +0.3
1,469,284 - Psyr_1300 0.14 -0.4
1,469,297 + Psyr_1300 0.15 -0.0
1,469,297 + Psyr_1300 0.15 -0.0
1,469,298 - Psyr_1300 0.15 +0.6
1,469,481 + Psyr_1300 0.23 -0.4
1,469,481 + Psyr_1300 0.23 +1.1
1,469,482 - Psyr_1300 0.24 +1.1
1,469,640 + Psyr_1300 0.31 -0.5
1,469,641 - Psyr_1300 0.31 +1.3
1,469,846 + Psyr_1300 0.41 +0.4
1,469,847 - Psyr_1300 0.41 +0.4
1,469,899 + Psyr_1300 0.43 +0.7
1,469,900 - Psyr_1300 0.44 -1.4
1,469,900 - Psyr_1300 0.44 +1.1
1,469,994 + Psyr_1300 0.48 +1.0
1,469,994 + Psyr_1300 0.48 +0.6
1,469,995 - Psyr_1300 0.48 -0.7
1,470,255 + Psyr_1300 0.61 -0.3
1,470,256 - Psyr_1300 0.61 +2.1
1,470,256 - Psyr_1300 0.61 -0.2
1,470,479 + Psyr_1300 0.71 -1.2
1,470,479 + Psyr_1300 0.71 -0.4
1,470,751 - Psyr_1300 0.84 +0.3
1,470,877 - +0.3
1,470,921 + +0.4
1,470,921 + -0.2
1,470,921 + +0.4
1,470,921 + -0.4
1,470,922 - -0.0
1,470,922 - +0.1
1,470,922 - -0.4
1,470,922 - -2.0
1,471,125 + +0.0
1,471,125 + +2.9
1,471,126 - +1.6
1,471,126 - +0.4
1,471,171 - +0.5
1,471,171 - -1.4
1,471,180 + +0.4
1,471,181 - -1.4
1,471,181 - +0.4
1,471,364 + +0.7
1,471,364 + +0.1
1,471,364 + +0.2
1,471,365 - -2.4
1,471,383 - +0.3
1,471,518 - Psyr_1301 0.19 +0.3
1,471,518 - Psyr_1301 0.19 -2.4
1,471,651 - Psyr_1301 0.37 -0.8
1,471,683 + Psyr_1301 0.41 +1.0
1,471,683 + Psyr_1301 0.41 +1.2
1,471,684 - Psyr_1301 0.41 +0.4
1,471,692 + Psyr_1301 0.42 -0.4
1,471,692 + Psyr_1301 0.42 +1.4
1,471,692 + Psyr_1301 0.42 +0.6
1,471,693 - Psyr_1301 0.42 +0.6
1,471,782 - Psyr_1301 0.54 +1.9
1,471,989 + Psyr_1301 0.82 -0.4
1,471,989 + Psyr_1301 0.82 +0.6
1,471,989 + Psyr_1301 0.82 -0.1
1,471,989 + Psyr_1301 0.82 -1.4
1,471,989 + Psyr_1301 0.82 -0.0
1,471,989 + Psyr_1301 0.82 +0.1
1,471,989 + Psyr_1301 0.82 +0.9
1,471,989 + Psyr_1301 0.82 +0.1
1,471,989 + -2.0
1,471,989 + Psyr_1301 0.82 +0.0
1,471,989 + Psyr_1301 0.82 +0.7
1,471,989 + Psyr_1301 0.82 -1.3
1,471,989 + Psyr_1301 0.82 -0.6
1,471,989 + Psyr_1301 0.82 +1.1
1,471,989 + Psyr_1301 0.82 -0.0
1,471,989 + Psyr_1301 0.82 -1.6
1,471,989 + +2.6
1,471,990 - Psyr_1301 0.82 -0.5
1,471,990 - Psyr_1301 0.82 +1.7
1,471,990 - Psyr_1301 0.82 -1.4
1,471,990 - Psyr_1301 0.82 +0.4
1,471,990 - Psyr_1301 0.82 -0.2
1,471,990 - Psyr_1301 0.82 +0.1
1,471,990 - Psyr_1301 0.82 +0.2
1,471,990 - Psyr_1301 0.82 +1.3
1,471,990 - Psyr_1301 0.82 -0.3
1,471,990 - Psyr_1301 0.82 -0.3
1,471,990 - Psyr_1301 0.82 +0.6
1,471,990 - Psyr_1301 0.82 +0.4
1,472,040 + Psyr_1301 0.89 +0.8

Or see this region's nucleotide sequence