Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1233

Experiment: KB with Nitrofurantoin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1231 and Psyr_1232 are separated by 108 nucleotidesPsyr_1232 and Psyr_1233 are separated by 66 nucleotidesPsyr_1233 and Psyr_1234 are separated by 215 nucleotidesPsyr_1234 and Psyr_1235 overlap by 1 nucleotides Psyr_1231: Psyr_1231 - protein translocase subunit secF, at 1,389,879 to 1,390,790 _1231 Psyr_1232: Psyr_1232 - conserved hypothetical protein, at 1,390,899 to 1,391,438 _1232 Psyr_1233: Psyr_1233 - Inositol monophosphatase, at 1,391,505 to 1,392,320 _1233 Psyr_1234: Psyr_1234 - RNA methyltransferase TrmH, group 1, at 1,392,536 to 1,393,300 _1234 Psyr_1235: Psyr_1235 - serine O-acetyltransferase, at 1,393,300 to 1,394,076 _1235 Position (kb) 1391 1392 1393Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1390.789 kb on - strandat 1390.803 kb on + strandat 1390.803 kb on + strandat 1390.803 kb on + strandat 1390.804 kb on - strandat 1390.804 kb on - strandat 1390.910 kb on + strandat 1390.910 kb on + strandat 1390.910 kb on + strandat 1390.910 kb on + strandat 1390.910 kb on + strandat 1390.910 kb on + strandat 1390.911 kb on - strandat 1390.911 kb on - strandat 1390.911 kb on - strandat 1390.911 kb on - strandat 1390.930 kb on + strandat 1390.930 kb on + strandat 1390.930 kb on + strandat 1390.931 kb on - strandat 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.971 kb on + strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.972 kb on - strand, within Psyr_1232at 1390.973 kb on + strand, within Psyr_1232at 1390.973 kb on + strand, within Psyr_1232at 1390.973 kb on + strand, within Psyr_1232at 1390.973 kb on + strand, within Psyr_1232at 1390.973 kb on + strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.974 kb on - strand, within Psyr_1232at 1390.998 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.008 kb on + strand, within Psyr_1232at 1391.009 kb on - strand, within Psyr_1232at 1391.069 kb on - strand, within Psyr_1232at 1391.262 kb on + strand, within Psyr_1232at 1391.262 kb on + strand, within Psyr_1232at 1391.263 kb on - strand, within Psyr_1232at 1391.263 kb on - strand, within Psyr_1232at 1391.263 kb on - strand, within Psyr_1232at 1391.263 kb on - strand, within Psyr_1232at 1391.323 kb on - strand, within Psyr_1232at 1391.323 kb on - strand, within Psyr_1232at 1391.334 kb on + strand, within Psyr_1232at 1391.334 kb on + strand, within Psyr_1232at 1391.334 kb on + strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.335 kb on - strand, within Psyr_1232at 1391.465 kb on + strandat 1391.466 kb on - strandat 1391.466 kb on - strandat 1391.494 kb on - strandat 1392.473 kb on + strandat 1392.473 kb on + strandat 1392.985 kb on - strand, within Psyr_1234at 1392.998 kb on + strand, within Psyr_1234at 1392.998 kb on + strand, within Psyr_1234at 1392.999 kb on - strand, within Psyr_1234at 1392.999 kb on - strand, within Psyr_1234at 1392.999 kb on - strand, within Psyr_1234at 1392.999 kb on - strand, within Psyr_1234at 1393.106 kb on + strand, within Psyr_1234at 1393.107 kb on - strand, within Psyr_1234at 1393.107 kb on - strand, within Psyr_1234at 1393.193 kb on + strand, within Psyr_1234at 1393.194 kb on - strand, within Psyr_1234at 1393.280 kb on + strandat 1393.280 kb on + strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.25 mg/ml
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1,390,789 - -0.3
1,390,803 + +0.1
1,390,803 + +2.2
1,390,803 + +2.9
1,390,804 - +0.1
1,390,804 - +1.3
1,390,910 + +1.0
1,390,910 + -0.9
1,390,910 + +1.6
1,390,910 + +1.2
1,390,910 + +1.1
1,390,910 + -1.8
1,390,911 - +0.5
1,390,911 - +0.7
1,390,911 - +0.1
1,390,911 - +0.5
1,390,930 + +1.5
1,390,930 + +0.2
1,390,930 + +0.0
1,390,931 - +0.0
1,390,971 + Psyr_1232 0.13 -0.4
1,390,971 + Psyr_1232 0.13 +0.7
1,390,971 + Psyr_1232 0.13 +0.6
1,390,971 + Psyr_1232 0.13 +0.8
1,390,971 + Psyr_1232 0.13 +0.1
1,390,971 + Psyr_1232 0.13 +0.9
1,390,971 + Psyr_1232 0.13 -0.8
1,390,971 + Psyr_1232 0.13 -0.9
1,390,971 + Psyr_1232 0.13 +0.8
1,390,971 + Psyr_1232 0.13 +0.9
1,390,971 + Psyr_1232 0.13 +0.8
1,390,971 + Psyr_1232 0.13 +1.1
1,390,971 + Psyr_1232 0.13 -0.8
1,390,972 - Psyr_1232 0.14 -0.3
1,390,972 - Psyr_1232 0.14 +0.9
1,390,972 - Psyr_1232 0.14 +1.2
1,390,972 - Psyr_1232 0.14 -0.2
1,390,972 - Psyr_1232 0.14 +0.4
1,390,972 - Psyr_1232 0.14 +1.4
1,390,972 - Psyr_1232 0.14 -0.1
1,390,972 - Psyr_1232 0.14 -0.5
1,390,972 - Psyr_1232 0.14 +0.6
1,390,972 - Psyr_1232 0.14 -0.2
1,390,972 - Psyr_1232 0.14 +0.7
1,390,973 + Psyr_1232 0.14 +1.6
1,390,973 + Psyr_1232 0.14 +1.0
1,390,973 + Psyr_1232 0.14 +0.4
1,390,973 + Psyr_1232 0.14 +0.6
1,390,973 + Psyr_1232 0.14 -0.1
1,390,974 - Psyr_1232 0.14 +0.5
1,390,974 - Psyr_1232 0.14 -0.7
1,390,974 - Psyr_1232 0.14 +1.2
1,390,974 - Psyr_1232 0.14 +1.4
1,390,974 - Psyr_1232 0.14 -0.0
1,390,974 - Psyr_1232 0.14 -1.4
1,390,998 + Psyr_1232 0.18 +3.6
1,391,008 + Psyr_1232 0.20 -0.2
1,391,008 + Psyr_1232 0.20 +0.1
1,391,008 + Psyr_1232 0.20 +0.6
1,391,008 + Psyr_1232 0.20 +0.2
1,391,008 + Psyr_1232 0.20 +0.5
1,391,008 + Psyr_1232 0.20 -1.0
1,391,009 - Psyr_1232 0.20 +0.9
1,391,069 - Psyr_1232 0.31 +0.8
1,391,262 + Psyr_1232 0.67 +1.1
1,391,262 + Psyr_1232 0.67 -2.9
1,391,263 - Psyr_1232 0.67 -0.3
1,391,263 - Psyr_1232 0.67 -1.0
1,391,263 - Psyr_1232 0.67 +0.7
1,391,263 - Psyr_1232 0.67 +0.6
1,391,323 - Psyr_1232 0.79 +1.2
1,391,323 - Psyr_1232 0.79 +1.1
1,391,334 + Psyr_1232 0.81 -1.1
1,391,334 + Psyr_1232 0.81 +1.6
1,391,334 + Psyr_1232 0.81 -1.3
1,391,335 - Psyr_1232 0.81 +0.9
1,391,335 - Psyr_1232 0.81 +0.6
1,391,335 - Psyr_1232 0.81 -0.3
1,391,335 - Psyr_1232 0.81 +0.0
1,391,335 - Psyr_1232 0.81 +0.3
1,391,335 - Psyr_1232 0.81 -0.8
1,391,335 - Psyr_1232 0.81 +2.2
1,391,335 - Psyr_1232 0.81 +1.2
1,391,335 - Psyr_1232 0.81 -0.9
1,391,335 - Psyr_1232 0.81 -0.4
1,391,465 + +0.3
1,391,466 - -0.8
1,391,466 - -0.8
1,391,494 - +1.1
1,392,473 + +0.4
1,392,473 + +0.6
1,392,985 - Psyr_1234 0.59 -0.4
1,392,998 + Psyr_1234 0.60 +0.5
1,392,998 + Psyr_1234 0.60 -1.0
1,392,999 - Psyr_1234 0.61 -0.1
1,392,999 - Psyr_1234 0.61 -0.6
1,392,999 - Psyr_1234 0.61 -2.4
1,392,999 - Psyr_1234 0.61 -0.8
1,393,106 + Psyr_1234 0.75 +0.1
1,393,107 - Psyr_1234 0.75 -0.2
1,393,107 - Psyr_1234 0.75 -1.4
1,393,193 + Psyr_1234 0.86 +0.8
1,393,194 - Psyr_1234 0.86 +2.2
1,393,280 + +0.9
1,393,280 + -2.3
1,393,281 - -0.6
1,393,281 - +0.1
1,393,281 - +0.1
1,393,281 - -0.8

Or see this region's nucleotide sequence