Experiment: KB with Nitrofurantoin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0824 and Psyr_0825 are separated by 107 nucleotides Psyr_0825 and Psyr_0826 are separated by 383 nucleotides
Psyr_0824: Psyr_0824 - acetyl-CoA acetyltransferase, at 932,388 to 933,566
_0824
Psyr_0825: Psyr_0825 - conserved hypothetical protein, at 933,674 to 934,540
_0825
Psyr_0826: Psyr_0826 - glucose-6-phosphate isomerase, at 934,924 to 936,588
_0826
Position (kb) 933
934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 932.783 kb on + strand, within Psyr_0824 at 933.064 kb on + strand, within Psyr_0824 at 933.065 kb on - strand, within Psyr_0824 at 933.065 kb on - strand, within Psyr_0824 at 933.103 kb on + strand, within Psyr_0824 at 933.103 kb on + strand, within Psyr_0824 at 933.103 kb on + strand, within Psyr_0824 at 933.104 kb on - strand, within Psyr_0824 at 933.199 kb on + strand, within Psyr_0824 at 933.199 kb on + strand, within Psyr_0824 at 933.199 kb on + strand, within Psyr_0824 at 933.199 kb on + strand, within Psyr_0824 at 933.200 kb on - strand, within Psyr_0824 at 933.200 kb on - strand, within Psyr_0824 at 933.200 kb on - strand, within Psyr_0824 at 933.200 kb on - strand, within Psyr_0824 at 933.585 kb on + strand at 933.611 kb on - strand at 933.611 kb on - strand at 933.611 kb on - strand at 933.745 kb on + strand at 933.963 kb on + strand, within Psyr_0825 at 933.963 kb on + strand, within Psyr_0825 at 933.963 kb on + strand, within Psyr_0825 at 933.964 kb on - strand, within Psyr_0825 at 934.038 kb on + strand, within Psyr_0825 at 934.038 kb on + strand, within Psyr_0825 at 934.041 kb on + strand, within Psyr_0825 at 934.041 kb on + strand, within Psyr_0825 at 934.041 kb on + strand, within Psyr_0825 at 934.042 kb on - strand, within Psyr_0825 at 934.080 kb on + strand, within Psyr_0825 at 934.118 kb on + strand, within Psyr_0825 at 934.119 kb on - strand, within Psyr_0825 at 934.158 kb on + strand, within Psyr_0825 at 934.241 kb on - strand, within Psyr_0825 at 934.248 kb on + strand, within Psyr_0825 at 934.248 kb on + strand, within Psyr_0825 at 934.248 kb on + strand, within Psyr_0825 at 934.249 kb on - strand, within Psyr_0825 at 934.568 kb on + strand at 934.568 kb on + strand at 934.569 kb on - strand at 934.569 kb on - strand at 934.632 kb on + strand at 934.649 kb on + strand at 934.649 kb on + strand at 934.649 kb on + strand at 934.649 kb on + strand at 934.650 kb on - strand at 934.650 kb on - strand at 934.662 kb on - strand at 934.662 kb on - strand at 934.662 kb on - strand at 934.688 kb on + strand at 934.688 kb on + strand at 934.688 kb on + strand at 934.688 kb on + strand at 934.688 kb on + strand at 934.689 kb on - strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.701 kb on + strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.702 kb on - strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.718 kb on + strand at 934.719 kb on - strand at 934.719 kb on - strand at 934.719 kb on - strand at 934.719 kb on - strand at 934.802 kb on + strand at 934.802 kb on + strand at 934.802 kb on + strand at 934.802 kb on + strand at 934.802 kb on + strand at 934.845 kb on + strand at 934.845 kb on + strand at 934.846 kb on - strand at 934.949 kb on + strand at 934.949 kb on + strand at 934.950 kb on - strand at 934.950 kb on - strand at 935.016 kb on - strand at 935.016 kb on - strand at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.111 kb on + strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.112 kb on - strand, within Psyr_0826 at 935.414 kb on + strand, within Psyr_0826 at 935.414 kb on + strand, within Psyr_0826 at 935.415 kb on - strand, within Psyr_0826 at 935.481 kb on + strand, within Psyr_0826
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.25 mg/ml remove 932,783 + Psyr_0824 0.34 +0.2 933,064 + Psyr_0824 0.57 -0.6 933,065 - Psyr_0824 0.57 -0.2 933,065 - Psyr_0824 0.57 +2.4 933,103 + Psyr_0824 0.61 +0.3 933,103 + Psyr_0824 0.61 -1.0 933,103 + Psyr_0824 0.61 +0.4 933,104 - Psyr_0824 0.61 +0.3 933,199 + Psyr_0824 0.69 -0.2 933,199 + Psyr_0824 0.69 -0.2 933,199 + Psyr_0824 0.69 -0.4 933,199 + Psyr_0824 0.69 +0.9 933,200 - Psyr_0824 0.69 +0.2 933,200 - Psyr_0824 0.69 +0.9 933,200 - Psyr_0824 0.69 +1.1 933,200 - Psyr_0824 0.69 -0.7 933,585 + +2.4 933,611 - -1.0 933,611 - +0.7 933,611 - +1.4 933,745 + -0.3 933,963 + Psyr_0825 0.33 +0.3 933,963 + Psyr_0825 0.33 +0.0 933,963 + Psyr_0825 0.33 +0.4 933,964 - Psyr_0825 0.33 +0.1 934,038 + Psyr_0825 0.42 +0.4 934,038 + Psyr_0825 0.42 +1.4 934,041 + Psyr_0825 0.42 +2.0 934,041 + Psyr_0825 0.42 +1.0 934,041 + Psyr_0825 0.42 +1.5 934,042 - Psyr_0825 0.42 -0.7 934,080 + Psyr_0825 0.47 +1.3 934,118 + Psyr_0825 0.51 -0.1 934,119 - Psyr_0825 0.51 -0.4 934,158 + Psyr_0825 0.56 +1.4 934,241 - Psyr_0825 0.65 +3.6 934,248 + Psyr_0825 0.66 +2.1 934,248 + Psyr_0825 0.66 +0.6 934,248 + Psyr_0825 0.66 +0.4 934,249 - Psyr_0825 0.66 -0.6 934,568 + -1.0 934,568 + +0.0 934,569 - +1.4 934,569 - -0.7 934,632 + +0.0 934,649 + +0.6 934,649 + +0.3 934,649 + +0.2 934,649 + -2.0 934,650 - -0.3 934,650 - +0.0 934,662 - -0.7 934,662 - -0.4 934,662 - -1.2 934,688 + +0.8 934,688 + +0.8 934,688 + -1.3 934,688 + +0.4 934,688 + +0.2 934,689 - +0.4 934,701 + -0.2 934,701 + +0.6 934,701 + +0.6 934,701 + +0.4 934,701 + +0.9 934,701 + +1.0 934,701 + +1.4 934,701 + +1.0 934,701 + -1.3 934,701 + -1.2 934,702 - -1.4 934,702 - +0.0 934,702 - -0.2 934,702 - +1.5 934,702 - +0.1 934,702 - +0.4 934,702 - +1.4 934,702 - +0.9 934,702 - +0.1 934,718 + +0.1 934,718 + +2.1 934,718 + +2.1 934,718 + -0.2 934,718 + +2.4 934,718 + +0.2 934,718 + +1.0 934,718 + +0.9 934,718 + +3.0 934,718 + -0.4 934,718 + +1.0 934,718 + +1.2 934,718 + -0.3 934,718 + -0.4 934,719 - -0.4 934,719 - -0.9 934,719 - -0.7 934,719 - +0.5 934,802 + -0.6 934,802 + -0.6 934,802 + -0.1 934,802 + +3.2 934,802 + -0.2 934,845 + +0.4 934,845 + +1.0 934,846 - -0.9 934,949 + -1.2 934,949 + -2.6 934,950 - -1.6 934,950 - -3.2 935,016 - -0.8 935,016 - -1.7 935,111 + Psyr_0826 0.11 -0.2 935,111 + Psyr_0826 0.11 -1.7 935,111 + Psyr_0826 0.11 -0.6 935,111 + Psyr_0826 0.11 -3.0 935,111 + Psyr_0826 0.11 +0.0 935,111 + Psyr_0826 0.11 +0.4 935,111 + Psyr_0826 0.11 -0.6 935,111 + Psyr_0826 0.11 -3.5 935,111 + Psyr_0826 0.11 -0.9 935,111 + Psyr_0826 0.11 -0.9 935,111 + Psyr_0826 0.11 -2.2 935,111 + Psyr_0826 0.11 -1.9 935,111 + Psyr_0826 0.11 -1.2 935,111 + Psyr_0826 0.11 -2.0 935,112 - Psyr_0826 0.11 -1.3 935,112 - Psyr_0826 0.11 -0.6 935,112 - Psyr_0826 0.11 -1.2 935,112 - Psyr_0826 0.11 +2.0 935,112 - Psyr_0826 0.11 -1.6 935,112 - Psyr_0826 0.11 +0.4 935,112 - Psyr_0826 0.11 +0.4 935,112 - Psyr_0826 0.11 -1.2 935,414 + Psyr_0826 0.29 +1.0 935,414 + Psyr_0826 0.29 -2.8 935,415 - Psyr_0826 0.29 -1.9 935,481 + Psyr_0826 0.33 -1.3
Or see this region's nucleotide sequence