Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0774

Experiment: KB with Nitrofurantoin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0773 and Psyr_0774 overlap by 4 nucleotidesPsyr_0774 and Psyr_0775 are separated by 14 nucleotidesPsyr_0775 and Psyr_0776 are separated by 10 nucleotides Psyr_0773: Psyr_0773 - Aryldialkylphosphatase, at 877,506 to 878,621 _0773 Psyr_0774: Psyr_0774 - monosaccharide ABC transporter membrane protein, CUT2 family, at 878,618 to 879,637 _0774 Psyr_0775: Psyr_0775 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 879,652 to 880,428 _0775 Psyr_0776: Psyr_0776 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 880,439 to 881,383 _0776 Position (kb) 878 879 880Strain fitness (log2 ratio) -2 -1 0 1 2at 877.651 kb on + strand, within Psyr_0773at 877.651 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.807 kb on + strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.808 kb on - strand, within Psyr_0773at 877.810 kb on + strand, within Psyr_0773at 877.810 kb on + strand, within Psyr_0773at 877.811 kb on - strand, within Psyr_0773at 877.811 kb on - strand, within Psyr_0773at 877.831 kb on + strand, within Psyr_0773at 878.182 kb on + strand, within Psyr_0773at 878.182 kb on + strand, within Psyr_0773at 878.182 kb on + strand, within Psyr_0773at 878.182 kb on + strand, within Psyr_0773at 878.182 kb on + strand, within Psyr_0773at 878.183 kb on - strand, within Psyr_0773at 878.183 kb on - strand, within Psyr_0773at 878.183 kb on - strand, within Psyr_0773at 878.183 kb on - strand, within Psyr_0773at 878.183 kb on - strand, within Psyr_0773at 878.207 kb on - strand, within Psyr_0773at 878.207 kb on - strand, within Psyr_0773at 878.207 kb on - strand, within Psyr_0773at 878.228 kb on + strand, within Psyr_0773at 878.228 kb on + strand, within Psyr_0773at 878.654 kb on + strandat 878.654 kb on + strandat 878.654 kb on + strandat 878.654 kb on + strandat 878.655 kb on - strandat 878.655 kb on - strandat 878.655 kb on - strandat 878.655 kb on - strandat 878.687 kb on + strandat 878.687 kb on + strandat 878.716 kb on - strandat 878.768 kb on - strand, within Psyr_0774at 878.946 kb on + strand, within Psyr_0774at 878.946 kb on + strand, within Psyr_0774at 879.168 kb on + strand, within Psyr_0774at 879.168 kb on + strand, within Psyr_0774at 879.203 kb on - strand, within Psyr_0774at 879.203 kb on - strand, within Psyr_0774at 879.491 kb on + strand, within Psyr_0774at 879.681 kb on + strandat 879.681 kb on + strandat 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.758 kb on + strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.759 kb on - strand, within Psyr_0775at 879.985 kb on + strand, within Psyr_0775at 880.355 kb on - strandat 880.381 kb on - strandat 880.440 kb on + strandat 880.440 kb on + strandat 880.440 kb on + strandat 880.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.25 mg/ml
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877,651 + Psyr_0773 0.13 -0.7
877,651 + Psyr_0773 0.13 -2.3
877,807 + Psyr_0773 0.27 +1.0
877,807 + Psyr_0773 0.27 +0.1
877,807 + Psyr_0773 0.27 -0.8
877,807 + Psyr_0773 0.27 -0.4
877,807 + Psyr_0773 0.27 -0.2
877,807 + Psyr_0773 0.27 +0.1
877,807 + Psyr_0773 0.27 -0.1
877,807 + Psyr_0773 0.27 +0.2
877,807 + Psyr_0773 0.27 -1.2
877,807 + Psyr_0773 0.27 +0.5
877,807 + Psyr_0773 0.27 +0.4
877,807 + Psyr_0773 0.27 +0.0
877,807 + Psyr_0773 0.27 +2.4
877,807 + Psyr_0773 0.27 +0.9
877,808 - Psyr_0773 0.27 -0.0
877,808 - Psyr_0773 0.27 +1.3
877,808 - Psyr_0773 0.27 +1.2
877,808 - Psyr_0773 0.27 +1.0
877,808 - Psyr_0773 0.27 -0.4
877,808 - Psyr_0773 0.27 +1.2
877,808 - Psyr_0773 0.27 -1.5
877,810 + Psyr_0773 0.27 -0.2
877,810 + Psyr_0773 0.27 -0.8
877,811 - Psyr_0773 0.27 +0.2
877,811 - Psyr_0773 0.27 +0.4
877,831 + Psyr_0773 0.29 +0.4
878,182 + Psyr_0773 0.61 -0.3
878,182 + Psyr_0773 0.61 +0.7
878,182 + Psyr_0773 0.61 -2.4
878,182 + Psyr_0773 0.61 -0.3
878,182 + Psyr_0773 0.61 -0.2
878,183 - Psyr_0773 0.61 +1.9
878,183 - Psyr_0773 0.61 -0.4
878,183 - Psyr_0773 0.61 -0.3
878,183 - Psyr_0773 0.61 +0.4
878,183 - Psyr_0773 0.61 -0.2
878,207 - Psyr_0773 0.63 -0.3
878,207 - Psyr_0773 0.63 -0.1
878,207 - Psyr_0773 0.63 +0.8
878,228 + Psyr_0773 0.65 +0.6
878,228 + Psyr_0773 0.65 +0.2
878,654 + -0.2
878,654 + +0.5
878,654 + +1.0
878,654 + +0.3
878,655 - +0.3
878,655 - +0.6
878,655 - -1.3
878,655 - +0.4
878,687 + -0.5
878,687 + -0.6
878,716 - -0.3
878,768 - Psyr_0774 0.15 +0.1
878,946 + Psyr_0774 0.32 +0.6
878,946 + Psyr_0774 0.32 +1.3
879,168 + Psyr_0774 0.54 -0.8
879,168 + Psyr_0774 0.54 -0.2
879,203 - Psyr_0774 0.57 -0.1
879,203 - Psyr_0774 0.57 -0.9
879,491 + Psyr_0774 0.86 +2.7
879,681 + -0.4
879,681 + +1.1
879,758 + Psyr_0775 0.14 +0.8
879,758 + Psyr_0775 0.14 +1.4
879,758 + Psyr_0775 0.14 +1.0
879,758 + Psyr_0775 0.14 +0.4
879,758 + Psyr_0775 0.14 +0.4
879,758 + Psyr_0775 0.14 +0.4
879,758 + Psyr_0775 0.14 +0.5
879,758 + Psyr_0775 0.14 +0.3
879,758 + Psyr_0775 0.14 +0.2
879,758 + Psyr_0775 0.14 -0.2
879,758 + Psyr_0775 0.14 -0.5
879,758 + Psyr_0775 0.14 +1.6
879,758 + Psyr_0775 0.14 -0.9
879,758 + Psyr_0775 0.14 +0.9
879,758 + Psyr_0775 0.14 -1.1
879,759 - Psyr_0775 0.14 +0.3
879,759 - Psyr_0775 0.14 +0.1
879,759 - Psyr_0775 0.14 +0.3
879,759 - Psyr_0775 0.14 -1.2
879,759 - Psyr_0775 0.14 +1.0
879,759 - Psyr_0775 0.14 +0.6
879,759 - Psyr_0775 0.14 +0.4
879,759 - Psyr_0775 0.14 -1.3
879,759 - Psyr_0775 0.14 -0.0
879,985 + Psyr_0775 0.43 +0.6
880,355 - -0.8
880,381 - +0.1
880,440 + -0.3
880,440 + -1.5
880,440 + +0.2
880,441 - +1.0

Or see this region's nucleotide sequence