Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0098

Experiment: KB with Nitrofurantoin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 0.25 mg/ml
108,483	-		Psyr_0097	0.22	+0.0
108,504	-		Psyr_0097	0.24	+2.4
108,515	+		Psyr_0097	0.24	-0.0
108,516	-		Psyr_0097	0.25	-0.1
108,548	+		Psyr_0097	0.27	+0.4
108,549	-		Psyr_0097	0.27	-1.1
108,614	+		Psyr_0097	0.32	-0.3
108,813	+		Psyr_0097	0.48	+0.6
108,814	-		Psyr_0097	0.49	-0.4
108,818	+		Psyr_0097	0.49	-0.7
108,885	-		Psyr_0097	0.54	+0.5
108,964	+		Psyr_0097	0.61	-0.8
108,964	+		Psyr_0097	0.61	-0.6
109,014	+		Psyr_0097	0.65	+0.1
109,090	-		Psyr_0097	0.71	-0.0
109,141	+		Psyr_0097	0.75	+0.1
109,404	+				+0.1
109,493	-				+1.3
109,568	+				-0.5
109,568	+				+0.2
109,568	+				-0.3
109,569	-				+0.7
109,607	-				-2.6
109,642	+		Psyr_0098	0.10	-0.1
109,756	+		Psyr_0098	0.16	-0.4
109,757	-		Psyr_0098	0.16	-0.9
109,793	-		Psyr_0098	0.18	-0.6
109,821	+		Psyr_0098	0.20	+2.0
109,904	+		Psyr_0098	0.24	-0.0
109,952	+		Psyr_0098	0.27	-0.7
110,005	-		Psyr_0098	0.30	+0.2
110,021	+		Psyr_0098	0.30	-0.4
110,035	+		Psyr_0098	0.31	-0.8
110,036	-		Psyr_0098	0.31	-0.3
110,036	-		Psyr_0098	0.31	+1.2
110,036	-		Psyr_0098	0.31	-0.0
110,161	+		Psyr_0098	0.38	-0.3
110,213	+		Psyr_0098	0.41	-0.7
110,316	-		Psyr_0098	0.46	-0.0
110,474	+		Psyr_0098	0.55	-0.5
110,475	-		Psyr_0098	0.55	+0.3
110,508	+		Psyr_0098	0.56	-0.1
110,573	+		Psyr_0098	0.60	-2.8
110,573	+		Psyr_0098	0.60	-2.5
110,574	-		Psyr_0098	0.60	-1.3
110,574	-		Psyr_0098	0.60	-0.5
110,574	-		Psyr_0098	0.60	+2.0
110,585	+		Psyr_0098	0.61	-0.5
110,587	+		Psyr_0098	0.61	-2.8
110,715	-		Psyr_0098	0.67	+2.3
110,715	-		Psyr_0098	0.67	-1.8
110,752	+		Psyr_0098	0.69	+0.3
110,752	+		Psyr_0098	0.69	+0.2
110,752	+		Psyr_0098	0.69	-0.9
110,752	+		Psyr_0098	0.69	-0.4
110,752	-		Psyr_0098	0.69	-1.0
110,754	+		Psyr_0098	0.70	-0.6
110,834	+		Psyr_0098	0.74	-0.1
110,836	+		Psyr_0098	0.74	-0.0
110,836	+		Psyr_0098	0.74	+0.2
110,836	+		Psyr_0098	0.74	-0.3
110,836	+		Psyr_0098	0.74	-0.8
110,836	+		Psyr_0098	0.74	-0.7
110,836	+		Psyr_0098	0.74	-0.6
110,837	-		Psyr_0098	0.74	-0.0
110,837	-		Psyr_0098	0.74	-0.2
110,837	-		Psyr_0098	0.74	+0.9
110,837	-		Psyr_0098	0.74	+0.4
110,837	-		Psyr_0098	0.74	-1.7
110,837	-		Psyr_0098	0.74	+1.4
110,837	-		Psyr_0098	0.74	-0.0
110,837	-		Psyr_0098	0.74	-0.4
110,837	-		Psyr_0098	0.74	-0.7
110,837	-		Psyr_0098	0.74	-1.6
110,837	-		Psyr_0098	0.74	-1.1
110,837	-		Psyr_0098	0.74	-2.2
110,838	+		Psyr_0098	0.74	-0.5
110,839	-		Psyr_0098	0.74	+0.8
110,890	+		Psyr_0098	0.77	+0.2
110,914	+		Psyr_0098	0.78	-1.0
110,914	+		Psyr_0098	0.78	-0.1
110,914	+		Psyr_0098	0.78	+0.6
110,915	-		Psyr_0098	0.78	+0.2
110,957	+		Psyr_0098	0.80	-0.0
110,958	-		Psyr_0098	0.80	+0.2
110,993	+		Psyr_0098	0.82	-0.0
110,993	+		Psyr_0098	0.82	+0.0
110,993	+		Psyr_0098	0.82	+0.7
111,015	-		Psyr_0098	0.83	-0.0
111,027	-		Psyr_0098	0.84	-0.3
111,065	+		Psyr_0098	0.86	-0.5
111,065	+		Psyr_0098	0.86	+0.1
111,065	+		Psyr_0098	0.86	-0.1
111,065	+		Psyr_0098	0.86	+0.2
111,066	-		Psyr_0098	0.86	-1.4
111,066	-		Psyr_0098	0.86	+0.0
111,066	-		Psyr_0098	0.86	-1.8
111,066	-		Psyr_0098	0.86	+1.4
111,066	-		Psyr_0098	0.86	+0.1
111,099	-		Psyr_0098	0.88	-0.8
111,099	-		Psyr_0098	0.88	-0.1
111,115	+		Psyr_0098	0.89	-0.2
111,126	-		Psyr_0098	0.89	-1.0
111,126	-		Psyr_0098	0.89	+0.2
111,137	+				-2.0
111,137	+				+1.0
111,137	+				+1.2
111,138	-				+0.7
111,142	+				+1.0
111,182	+				+0.7
111,258	-				+0.8
111,262	-				+0.3
111,444	+		Psyr_0099	0.53	-0.4
111,512	-		Psyr_0099	0.86	-0.0
111,523	+				-1.4
111,527	+				+0.9
111,543	+				+2.0
111,581	+				+1.2
111,582	-				-1.0
111,590	-				+0.5
111,624	-				+0.2
111,712	-				+0.4
111,716	+				+1.2
111,716	+				-0.6
111,717	-				-1.0
111,717	-				+0.8
111,717	-				+0.1
111,717	-				+0.2
111,756	-				+0.2
111,801	+				-1.8
111,801	+				-0.9
111,801	+				+1.5
111,801	+				+1.5
111,801	+				+1.7
111,802	-				-0.2
111,802	-				+0.0
111,802	-				+1.2
111,802	-				+0.6
111,905	-				+0.1
111,906	+				-1.8
111,906	+				-0.8
111,906	+				+0.6
111,906	+				-0.6
111,906	+				-0.2
111,907	-				+0.1
111,907	-				-1.1
111,908	+				+0.1
111,908	+				+1.0
111,909	-				+0.4
111,910	+				+0.3
111,910	+				+1.0
111,910	+				+2.0
111,910	+				+0.6
111,911	-				+0.4
111,911	-				+0.6
111,911	-				+0.7
111,911	-				+0.0
111,914	+				+1.7
111,914	+				-2.5
111,915	-				-1.0
111,915	-				+0.2
111,915	-				-0.7
111,916	+				+0.1
111,916	+				+0.7
111,917	-				+1.5
111,917	-				-0.7
111,917	-				-0.3
111,917	-				+0.7
111,960	-				+0.9
111,973	+				+0.6
111,973	+				+0.8
111,974	-				+0.5
111,997	-				-2.2
111,997	-				+0.3
112,021	-				+0.1
112,115	+				-1.5
112,147	-				-0.4
112,173	+				-0.5
112,173	+				+0.4
112,173	+				-1.0