Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0046

Experiment: KB with Nitrofurantoin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 0.25 mg/ml
46,960	+		Psyr_0045	0.52	-1.1
46,960	+		Psyr_0045	0.52	-0.0
46,960	+		Psyr_0045	0.52	+0.0
46,961	-		Psyr_0045	0.52	-1.0
46,961	-		Psyr_0045	0.52	-0.8
46,961	-		Psyr_0045	0.52	-0.7
46,961	-		Psyr_0045	0.52	-0.8
47,125	+		Psyr_0045	0.60	+1.2
47,125	+		Psyr_0045	0.60	-1.2
47,622	+		Psyr_0045	0.84	+0.2
47,623	-		Psyr_0045	0.85	-0.2
47,660	-		Psyr_0045	0.86	-0.4
47,660	-		Psyr_0045	0.86	-0.1
47,660	-		Psyr_0045	0.86	+0.3
47,660	-		Psyr_0045	0.86	-0.5
47,719	+		Psyr_0045	0.89	-0.0
47,719	+		Psyr_0045	0.89	+1.2
47,719	+		Psyr_0045	0.89	-0.1
47,720	-		Psyr_0045	0.89	-2.5
47,725	+		Psyr_0045	0.89	+0.6
47,725	+		Psyr_0045	0.89	-0.0
47,725	+		Psyr_0045	0.89	+0.7
47,725	+		Psyr_0045	0.89	+0.7
47,725	+		Psyr_0045	0.89	+0.1
47,725	+		Psyr_0045	0.89	-1.3
47,725	+		Psyr_0045	0.89	+1.2
47,726	-		Psyr_0045	0.90	+1.0
47,726	-		Psyr_0045	0.90	+0.6
47,726	-		Psyr_0045	0.90	+0.1
47,945	+				-0.8
47,953	+				-3.5
47,953	+				-0.3
48,099	-		Psyr_0046	0.56	-0.3
48,175	+		Psyr_0046	0.82	-0.8
48,175	+		Psyr_0046	0.82	-0.3
48,175	+		Psyr_0046	0.82	-2.1
48,175	+		Psyr_0046	0.82	-1.0
48,176	-		Psyr_0046	0.82	-0.8
48,176	-		Psyr_0046	0.82	-0.6
48,176	-		Psyr_0046	0.82	+0.8
48,176	-		Psyr_0046	0.82	-0.3
48,226	-				+0.3
48,235	+				-1.3
48,235	+				-0.6
48,235	+				+0.5
48,235	+				-0.2
48,236	-				+0.3
48,236	-				+0.1
48,236	-				-0.0
48,236	-				+1.5
48,236	-				+0.7
48,236	-				-0.5
48,240	-				+0.2
48,270	+				-0.4
48,270	+				-0.2
48,270	+				+0.1
48,270	+				-0.3
48,271	-				+0.4
48,271	-				-0.1
48,273	+				-1.5
48,273	+				+0.1
48,273	+				+0.7
48,273	+				+0.8
48,273	+				+0.2
48,273	+				-0.7
48,273	+				+1.2
48,274	-				+0.5
48,274	-				-0.0
48,274	-				+1.7
48,277	+				-0.0
48,277	+				+0.5
48,348	+		Psyr_0047	0.25	-1.2
48,348	+		Psyr_0047	0.25	-0.6
48,349	-		Psyr_0047	0.25	-1.3
48,368	+		Psyr_0047	0.32	+0.4
48,368	+		Psyr_0047	0.32	-0.3
48,368	+		Psyr_0047	0.32	+2.6
48,369	-		Psyr_0047	0.32	-0.5
48,369	-		Psyr_0047	0.32	+1.1
48,447	+		Psyr_0047	0.58	+0.9
48,447	+		Psyr_0047	0.58	-0.8
48,447	+		Psyr_0047	0.58	-0.5
48,448	-		Psyr_0047	0.58	-1.5
48,448	-		Psyr_0047	0.58	-0.7
48,448	-		Psyr_0047	0.58	+0.3
48,448	-		Psyr_0047	0.58	-0.0
48,448	-		Psyr_0047	0.58	-0.3
48,448	-		Psyr_0047	0.58	+0.3
48,448	-		Psyr_0047	0.58	+0.3
48,451	+		Psyr_0047	0.59	-0.5
48,464	+		Psyr_0047	0.63	+0.3
48,465	-		Psyr_0047	0.64	-0.3
48,468	+		Psyr_0047	0.65	+1.0
48,468	+		Psyr_0047	0.65	-0.5
48,468	+		Psyr_0047	0.65	-0.9
48,468	+		Psyr_0047	0.65	-0.3
48,468	+		Psyr_0047	0.65	-0.3
48,469	-		Psyr_0047	0.65	-0.0
48,469	-		Psyr_0047	0.65	+0.1
48,469	-		Psyr_0047	0.65	+0.6
48,469	-		Psyr_0047	0.65	-1.2
48,512	+		Psyr_0047	0.79	+0.8
48,523	+		Psyr_0047	0.83	-0.5
48,568	+				+1.3
48,568	+				+0.3
48,569	-				-1.2
48,592	-				+0.4
48,635	+				-1.3
48,635	+				+1.1
48,635	+				+1.0
48,636	-				+1.2
48,636	-				-2.9
48,636	-				-1.0
48,636	-				-0.3
48,669	+				-0.1
48,834	-		Psyr_0048	0.72	+0.2
48,885	+				+0.6
48,885	+				-0.2
48,886	-				-0.5
48,886	-				+1.2
48,886	-				-0.0
48,886	-				-0.8
48,886	-				-0.9
48,886	-				+0.6
48,959	+				-0.1
48,959	+				-1.3
48,959	+				-1.2
48,960	-				+2.0
48,960	-				-0.5
48,960	-				-0.5
49,026	-				+0.3
49,029	+				+1.3
49,045	+				+0.3
49,046	-				-0.5
49,052	+				+0.3
49,052	+				-0.1
49,052	+				+0.2
49,052	+				-0.1
49,053	-				+1.6
49,053	-				-0.1
49,053	-				-1.0
49,058	+				+0.4
49,058	+				-0.3
49,058	+				+0.1
49,059	-				+0.5
49,059	-				+1.0
49,059	-				+1.6
49,059	-				-0.5
49,159	+				-1.9
49,159	+				-1.0
49,159	+				-0.5
49,208	-				+0.5