Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12665

Experiment: R2A with Uranyl acetate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Uranyl acetate 2.5 mM
2,829,339	+		LRK54_RS12660	0.80	+0.8
2,829,340	-		LRK54_RS12660	0.80	-1.5
2,829,340	-		LRK54_RS12660	0.80	+0.2
2,829,340	-		LRK54_RS12660	0.80	-0.6
2,829,450	+		LRK54_RS12660	0.83	-0.6
2,829,450	+		LRK54_RS12660	0.83	+0.7
2,829,450	+		LRK54_RS12660	0.83	-0.5
2,829,450	+		LRK54_RS12660	0.83	+1.5
2,829,451	-		LRK54_RS12660	0.83	+1.5
2,829,451	-		LRK54_RS12660	0.83	-0.8
2,829,451	-		LRK54_RS12660	0.83	-0.8
2,829,451	-		LRK54_RS12660	0.83	-0.1
2,829,451	-		LRK54_RS12660	0.83	+0.5
2,829,451	-		LRK54_RS12660	0.83	+0.3
2,829,451	-		LRK54_RS12660	0.83	-2.1
2,829,788	+				-0.4
2,829,788	+				+0.9
2,829,788	+				-0.1
2,829,788	+				-0.5
2,829,788	+				-1.5
2,829,789	-				-0.8
2,829,789	-				-1.3
2,829,789	-				-0.1
2,829,789	-				+3.2
2,829,789	-				-0.9
2,829,789	-				+0.6
2,829,789	-				-0.1
2,829,876	+				-0.6
2,830,347	+				+0.2
2,830,348	-				-0.8
2,830,427	+				-0.7
2,830,493	+		LRK54_RS12665	0.12	-1.2
2,830,493	+		LRK54_RS12665	0.12	-1.1
2,830,493	+		LRK54_RS12665	0.12	-0.8
2,830,493	+		LRK54_RS12665	0.12	+0.1
2,830,493	+		LRK54_RS12665	0.12	-1.2
2,830,494	-		LRK54_RS12665	0.12	-0.8
2,830,494	-		LRK54_RS12665	0.12	-0.1
2,830,494	-		LRK54_RS12665	0.12	+0.1
2,830,494	-		LRK54_RS12665	0.12	-0.1
2,830,494	-		LRK54_RS12665	0.12	-1.1
2,830,494	-		LRK54_RS12665	0.12	+0.9
2,830,494	-		LRK54_RS12665	0.12	-0.8
2,830,494	-		LRK54_RS12665	0.12	-0.9
2,830,494	-		LRK54_RS12665	0.12	-1.6
2,830,494	-		LRK54_RS12665	0.12	+0.1
2,830,494	-		LRK54_RS12665	0.12	+1.1
2,830,494	-		LRK54_RS12665	0.12	-0.8
2,830,494	-		LRK54_RS12665	0.12	-0.9
2,830,494	-		LRK54_RS12665	0.12	+0.1
2,830,494	-		LRK54_RS12665	0.12	-1.3
2,830,494	-		LRK54_RS12665	0.12	-0.1
2,830,494	-		LRK54_RS12665	0.12	+1.5
2,830,494	-		LRK54_RS12665	0.12	+0.2
2,830,583	+		LRK54_RS12665	0.17	-1.8
2,831,072	+		LRK54_RS12665	0.44	-2.6
2,831,072	+		LRK54_RS12665	0.44	+0.5
2,831,072	+		LRK54_RS12665	0.44	-0.7
2,831,072	+		LRK54_RS12665	0.44	-1.9
2,831,073	-		LRK54_RS12665	0.44	+0.8
2,831,073	-		LRK54_RS12665	0.44	+0.0
2,831,073	-		LRK54_RS12665	0.44	-0.8
2,831,073	-		LRK54_RS12665	0.44	-0.6
2,831,073	-		LRK54_RS12665	0.44	-1.2
2,831,073	-		LRK54_RS12665	0.44	+2.1
2,831,073	-		LRK54_RS12665	0.44	+0.7
2,831,073	-		LRK54_RS12665	0.44	+0.6
2,831,073	-		LRK54_RS12665	0.44	-2.1
2,831,073	-		LRK54_RS12665	0.44	+0.7
2,831,109	-		LRK54_RS12665	0.46	-2.4
2,831,109	-		LRK54_RS12665	0.46	-1.3
2,831,248	-		LRK54_RS12665	0.54	-0.1
2,831,249	+		LRK54_RS12665	0.54	-1.8
2,831,249	+		LRK54_RS12665	0.54	-2.6
2,831,249	+		LRK54_RS12665	0.54	-1.1
2,831,249	+		LRK54_RS12665	0.54	-0.7
2,831,249	+		LRK54_RS12665	0.54	-0.5
2,831,249	+		LRK54_RS12665	0.54	-0.1
2,831,249	+		LRK54_RS12665	0.54	-1.1
2,831,249	+		LRK54_RS12665	0.54	-1.5
2,831,250	-		LRK54_RS12665	0.54	+1.5
2,831,250	-		LRK54_RS12665	0.54	-0.1
2,831,250	-		LRK54_RS12665	0.54	+2.5
2,831,250	-		LRK54_RS12665	0.54	-0.5
2,831,250	-		LRK54_RS12665	0.54	+0.7
2,831,250	-		LRK54_RS12665	0.54	+0.8
2,831,250	-		LRK54_RS12665	0.54	-0.9
2,831,250	-		LRK54_RS12665	0.54	+2.7
2,831,250	-		LRK54_RS12665	0.54	+1.5
2,831,345	+		LRK54_RS12665	0.60	-1.3
2,831,345	+		LRK54_RS12665	0.60	-0.1
2,831,345	+		LRK54_RS12665	0.60	-2.5
2,831,345	+		LRK54_RS12665	0.60	-0.5
2,831,346	-		LRK54_RS12665	0.60	-1.8
2,831,346	-		LRK54_RS12665	0.60	-0.3
2,831,399	+		LRK54_RS12665	0.63	+1.9
2,831,400	-		LRK54_RS12665	0.63	-0.1
2,831,400	-		LRK54_RS12665	0.63	-0.9
2,831,400	-		LRK54_RS12665	0.63	+0.4
2,831,418	+		LRK54_RS12665	0.64	+0.3
2,831,423	+		LRK54_RS12665	0.64	-1.2
2,831,423	+		LRK54_RS12665	0.64	+0.5
2,831,423	+		LRK54_RS12665	0.64	-0.8
2,831,423	+		LRK54_RS12665	0.64	+0.5
2,831,424	-		LRK54_RS12665	0.64	-0.8
2,831,424	-		LRK54_RS12665	0.64	+0.5
2,831,625	-		LRK54_RS12665	0.75	-1.1
2,831,822	+		LRK54_RS12665	0.87	-0.5
2,831,823	-		LRK54_RS12665	0.87	+0.9
2,831,823	-		LRK54_RS12665	0.87	-0.3
2,831,823	-		LRK54_RS12665	0.87	-0.3
2,831,823	-		LRK54_RS12665	0.87	+0.1
2,831,825	+		LRK54_RS12665	0.87	-1.1
2,831,826	-		LRK54_RS12665	0.87	-0.4
2,831,826	-		LRK54_RS12665	0.87	-0.8
2,831,826	-		LRK54_RS12665	0.87	-1.5
2,831,826	-		LRK54_RS12665	0.87	-0.8
2,831,873	+		LRK54_RS12665	0.89	+0.4
2,831,873	+		LRK54_RS12665	0.89	-0.8
2,831,873	+		LRK54_RS12665	0.89	-0.7
2,831,873	+		LRK54_RS12665	0.89	-0.8
2,831,873	+		LRK54_RS12665	0.89	-0.5
2,831,873	+		LRK54_RS12665	0.89	+1.1
2,831,873	+		LRK54_RS12665	0.89	-1.8
2,831,873	+		LRK54_RS12665	0.89	+0.5
2,831,873	+		LRK54_RS12665	0.89	-0.5
2,831,873	+		LRK54_RS12665	0.89	-0.5
2,831,873	+		LRK54_RS12665	0.89	-1.5
2,831,873	+		LRK54_RS12665	0.89	+1.8
2,831,873	+		LRK54_RS12665	0.89	+1.5
2,831,873	+		LRK54_RS12665	0.89	+1.5
2,831,874	-		LRK54_RS12665	0.89	+0.5
2,831,874	-		LRK54_RS12665	0.89	+1.1
2,831,874	-		LRK54_RS12665	0.89	-0.9
2,831,874	-		LRK54_RS12665	0.89	+0.3
2,831,874	-		LRK54_RS12665	0.89	+1.5
2,831,874	-		LRK54_RS12665	0.89	-2.5
2,831,915	+				+0.9
2,831,915	+				-1.6
2,831,915	+				-2.4
2,831,916	-				-0.8
2,831,916	-				-0.1
2,831,916	-				-0.7
2,831,916	-				-0.1
2,831,916	-				-1.2
2,832,107	+				-0.6
2,832,107	+				+0.4
2,832,108	-				+0.0
2,832,108	-				+0.9
2,832,108	-				-0.8
2,832,278	-				-0.5
2,832,278	-				-3.5
2,832,278	-				-1.3
2,832,278	-				-1.3
2,832,328	+				+1.5
2,832,329	-				-0.1
2,832,329	-				-1.7
2,832,341	-				-1.3
2,832,402	+				-0.1
2,832,557	-		LRK54_RS12670	0.13	-1.3
2,832,570	+		LRK54_RS12670	0.13	-2.7
2,832,583	+		LRK54_RS12670	0.14	-0.5
2,832,583	+		LRK54_RS12670	0.14	-0.5
2,832,664	+		LRK54_RS12670	0.17	-1.5
2,832,664	+		LRK54_RS12670	0.17	-1.5
2,832,665	-		LRK54_RS12670	0.17	-1.1
2,832,665	-		LRK54_RS12670	0.17	-0.5
2,832,871	+		LRK54_RS12670	0.25	-1.5
2,832,872	-		LRK54_RS12670	0.25	+1.5
2,832,872	-		LRK54_RS12670	0.25	-0.8
2,832,872	-		LRK54_RS12670	0.25	-1.5
2,832,872	-		LRK54_RS12670	0.25	+0.5
2,832,922	+		LRK54_RS12670	0.27	+1.5
2,832,922	+		LRK54_RS12670	0.27	+1.5
2,832,923	-		LRK54_RS12670	0.27	+0.5
2,832,923	-		LRK54_RS12670	0.27	-1.3
2,832,923	-		LRK54_RS12670	0.27	-1.5