Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06960

Experiment: R2A with Uranyl acetate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Uranyl acetate 2.5 mM
1,494,400	+		LRK54_RS06950	0.81	+2.8
1,494,400	+		LRK54_RS06950	0.81	-0.0
1,494,401	-		LRK54_RS06950	0.82	-0.7
1,494,401	-		LRK54_RS06950	0.82	-1.7
1,494,401	-		LRK54_RS06950	0.82	-1.0
1,495,065	+		LRK54_RS06955	0.61	-2.1
1,495,065	+		LRK54_RS06955	0.61	-0.3
1,495,066	-		LRK54_RS06955	0.61	-2.3
1,495,066	-		LRK54_RS06955	0.61	-0.5
1,495,066	-		LRK54_RS06955	0.61	+0.3
1,495,066	-		LRK54_RS06955	0.61	-2.0
1,495,066	-		LRK54_RS06955	0.61	-0.3
1,495,066	-		LRK54_RS06955	0.61	-0.6
1,495,098	+		LRK54_RS06955	0.65	+0.8
1,495,098	+		LRK54_RS06955	0.65	-1.9
1,495,098	+		LRK54_RS06955	0.65	-0.4
1,495,098	+		LRK54_RS06955	0.65	+0.8
1,495,099	-		LRK54_RS06955	0.65	-2.5
1,495,099	-		LRK54_RS06955	0.65	-0.1
1,495,099	-		LRK54_RS06955	0.65	-1.2
1,495,099	-		LRK54_RS06955	0.65	-0.4
1,495,099	-		LRK54_RS06955	0.65	+0.5
1,495,099	-		LRK54_RS06955	0.65	-3.1
1,495,099	-		LRK54_RS06955	0.65	-0.6
1,495,099	-		LRK54_RS06955	0.65	-0.5
1,495,210	+		LRK54_RS06955	0.80	-1.2
1,495,210	+		LRK54_RS06955	0.80	-0.1
1,495,210	+		LRK54_RS06955	0.80	-0.8
1,495,210	+		LRK54_RS06955	0.80	+0.2
1,495,210	+		LRK54_RS06955	0.80	-1.5
1,495,210	+		LRK54_RS06955	0.80	-0.5
1,495,210	+		LRK54_RS06955	0.80	+1.3
1,495,210	+		LRK54_RS06955	0.80	-2.1
1,495,210	+		LRK54_RS06955	0.80	-0.1
1,495,210	+		LRK54_RS06955	0.80	-0.7
1,495,211	-		LRK54_RS06955	0.80	-0.3
1,495,211	-		LRK54_RS06955	0.80	-0.8
1,495,211	-		LRK54_RS06955	0.80	-0.8
1,495,211	-		LRK54_RS06955	0.80	-1.4
1,495,211	-		LRK54_RS06955	0.80	-1.9
1,495,211	-		LRK54_RS06955	0.80	-0.6
1,495,211	-		LRK54_RS06955	0.80	-0.5
1,495,211	-		LRK54_RS06955	0.80	-1.0
1,495,211	-		LRK54_RS06955	0.80	+1.0
1,495,211	-		LRK54_RS06955	0.80	+0.9
1,495,211	-		LRK54_RS06955	0.80	+0.3
1,495,211	-		LRK54_RS06955	0.80	-0.5
1,495,211	-		LRK54_RS06955	0.80	-1.3
1,495,211	-		LRK54_RS06955	0.80	-1.8
1,495,211	-		LRK54_RS06955	0.80	-0.6
1,495,211	-		LRK54_RS06955	0.80	-0.2
1,495,212	+		LRK54_RS06955	0.81	+0.2
1,495,212	+		LRK54_RS06955	0.81	+0.5
1,495,212	+		LRK54_RS06955	0.81	-0.4
1,495,212	+		LRK54_RS06955	0.81	-1.6
1,495,212	+		LRK54_RS06955	0.81	-1.9
1,495,212	+		LRK54_RS06955	0.81	-1.4
1,495,212	+		LRK54_RS06955	0.81	-2.1
1,495,212	+		LRK54_RS06955	0.81	-0.3
1,495,212	+		LRK54_RS06955	0.81	-0.6
1,495,212	+		LRK54_RS06955	0.81	-1.6
1,495,212	+		LRK54_RS06955	0.81	-1.2
1,495,212	+		LRK54_RS06955	0.81	-0.8
1,495,212	+		LRK54_RS06955	0.81	-2.2
1,495,212	+		LRK54_RS06955	0.81	-0.7
1,495,213	-		LRK54_RS06955	0.81	-0.1
1,495,213	-		LRK54_RS06955	0.81	-0.8
1,495,213	-		LRK54_RS06955	0.81	-0.4
1,495,213	-		LRK54_RS06955	0.81	-0.6
1,495,213	-		LRK54_RS06955	0.81	-1.3
1,495,213	-		LRK54_RS06955	0.81	-0.5
1,495,213	-		LRK54_RS06955	0.81	-0.7
1,495,213	-		LRK54_RS06955	0.81	-0.8
1,495,213	-		LRK54_RS06955	0.81	-1.6
1,495,213	-		LRK54_RS06955	0.81	-0.6
1,495,213	-		LRK54_RS06955	0.81	-0.6
1,495,213	-		LRK54_RS06955	0.81	+0.3
1,495,213	-		LRK54_RS06955	0.81	-0.1
1,495,439	+		LRK54_RS06960	0.51	-1.0
1,495,439	+		LRK54_RS06960	0.51	+0.7
1,495,439	+		LRK54_RS06960	0.51	-0.2
1,495,439	+		LRK54_RS06960	0.51	+0.5
1,495,440	-		LRK54_RS06960	0.51	+1.0
1,495,440	-		LRK54_RS06960	0.51	-0.0
1,495,440	-		LRK54_RS06960	0.51	-0.6
1,495,511	+				+0.1
1,495,511	+				-0.9
1,495,511	+				+0.2
1,495,511	+				-0.3
1,495,511	+				-0.5
1,495,511	+				-1.3
1,495,511	+				-1.1
1,495,511	+				-0.4
1,495,511	+				-0.0
1,495,511	+				-1.5
1,495,512	-				-0.0
1,495,512	-				-0.5
1,495,512	-				-0.1
1,495,512	-				-0.5
1,495,512	-				-0.3
1,495,512	-				-0.0
1,495,512	-				+1.0
1,495,750	+		LRK54_RS06965	0.14	-0.8
1,495,750	+		LRK54_RS06965	0.14	-0.7
1,495,750	+		LRK54_RS06965	0.14	-1.3
1,495,939	+		LRK54_RS06965	0.26	+1.4
1,495,939	+		LRK54_RS06965	0.26	+0.8
1,495,939	+		LRK54_RS06965	0.26	+0.0
1,495,939	+		LRK54_RS06965	0.26	-0.5
1,495,939	+		LRK54_RS06965	0.26	+0.5
1,495,939	+		LRK54_RS06965	0.26	+0.4
1,495,939	+		LRK54_RS06965	0.26	+1.5
1,495,939	+		LRK54_RS06965	0.26	-1.5
1,495,939	+		LRK54_RS06965	0.26	-0.5
1,495,939	+		LRK54_RS06965	0.26	-1.5
1,495,940	-		LRK54_RS06965	0.27	+1.1
1,495,940	-		LRK54_RS06965	0.27	+0.8
1,495,940	-		LRK54_RS06965	0.27	-0.2
1,495,940	-		LRK54_RS06965	0.27	+1.5
1,495,940	-		LRK54_RS06965	0.27	+1.0
1,495,940	-		LRK54_RS06965	0.27	-0.7
1,495,940	-		LRK54_RS06965	0.27	-1.4
1,495,940	-		LRK54_RS06965	0.27	-0.1
1,496,069	+		LRK54_RS06965	0.35	-1.3
1,496,069	+		LRK54_RS06965	0.35	-1.8
1,496,069	+		LRK54_RS06965	0.35	-0.0
1,496,069	+		LRK54_RS06965	0.35	-0.5
1,496,069	+		LRK54_RS06965	0.35	+0.5
1,496,069	+		LRK54_RS06965	0.35	-1.0
1,496,069	+		LRK54_RS06965	0.35	-1.4
1,496,070	-		LRK54_RS06965	0.35	-0.0
1,496,070	-		LRK54_RS06965	0.35	-2.0
1,496,070	-		LRK54_RS06965	0.35	-2.8
1,496,070	-		LRK54_RS06965	0.35	+0.9
1,496,070	-		LRK54_RS06965	0.35	-1.5
1,496,070	-		LRK54_RS06965	0.35	-1.1
1,496,070	-		LRK54_RS06965	0.35	-0.2
1,496,070	-		LRK54_RS06965	0.35	-0.5
1,496,070	-		LRK54_RS06965	0.35	-0.8
1,496,070	-		LRK54_RS06965	0.35	+2.5
1,496,070	-		LRK54_RS06965	0.35	+0.2
1,496,071	+		LRK54_RS06965	0.35	-0.5
1,496,071	+		LRK54_RS06965	0.35	-1.4
1,496,071	+		LRK54_RS06965	0.35	+0.8
1,496,071	+		LRK54_RS06965	0.35	-0.9
1,496,072	-		LRK54_RS06965	0.35	+0.4
1,496,072	-		LRK54_RS06965	0.35	-1.7
1,496,134	+		LRK54_RS06965	0.39	-0.3
1,496,134	+		LRK54_RS06965	0.39	-0.8
1,496,134	+		LRK54_RS06965	0.39	-0.5
1,496,134	+		LRK54_RS06965	0.39	+0.5
1,496,134	+		LRK54_RS06965	0.39	-0.5
1,496,135	-		LRK54_RS06965	0.39	+1.2
1,496,135	-		LRK54_RS06965	0.39	-1.9
1,496,135	-		LRK54_RS06965	0.39	+0.0
1,496,197	+		LRK54_RS06965	0.43	+0.1
1,496,197	+		LRK54_RS06965	0.43	-0.6
1,496,197	+		LRK54_RS06965	0.43	-0.1
1,496,197	+		LRK54_RS06965	0.43	-1.9
1,496,197	+		LRK54_RS06965	0.43	+2.1
1,496,197	+		LRK54_RS06965	0.43	-1.8
1,496,197	+		LRK54_RS06965	0.43	-1.5
1,496,197	+		LRK54_RS06965	0.43	+0.4
1,496,197	+		LRK54_RS06965	0.43	-0.8
1,496,197	+		LRK54_RS06965	0.43	-0.6
1,496,197	+		LRK54_RS06965	0.43	+0.4
1,496,197	+		LRK54_RS06965	0.43	-0.6
1,496,197	+		LRK54_RS06965	0.43	+0.5
1,496,197	+		LRK54_RS06965	0.43	-1.2
1,496,197	+		LRK54_RS06965	0.43	+0.3
1,496,198	-		LRK54_RS06965	0.43	+0.5
1,496,198	-		LRK54_RS06965	0.43	+0.2
1,496,198	-		LRK54_RS06965	0.43	+0.0
1,496,198	-		LRK54_RS06965	0.43	-0.3
1,496,198	-		LRK54_RS06965	0.43	-1.8
1,496,198	-		LRK54_RS06965	0.43	-1.3
1,496,198	-		LRK54_RS06965	0.43	-0.5
1,496,198	-		LRK54_RS06965	0.43	-2.5
1,496,377	+		LRK54_RS06965	0.54	-1.5
1,496,377	+		LRK54_RS06965	0.54	+1.1
1,496,377	+		LRK54_RS06965	0.54	-0.6
1,496,377	+		LRK54_RS06965	0.54	-0.9
1,496,377	+		LRK54_RS06965	0.54	-0.6
1,496,377	+		LRK54_RS06965	0.54	+0.2
1,496,377	+		LRK54_RS06965	0.54	-0.7
1,496,378	-		LRK54_RS06965	0.54	+0.2
1,496,378	-		LRK54_RS06965	0.54	-1.4
1,496,378	-		LRK54_RS06965	0.54	-1.5
1,496,378	-		LRK54_RS06965	0.54	-1.6
1,496,378	-		LRK54_RS06965	0.54	-0.4
1,496,401	+		LRK54_RS06965	0.56	-0.9
1,496,401	+		LRK54_RS06965	0.56	-1.0
1,496,401	+		LRK54_RS06965	0.56	-1.1
1,496,401	+		LRK54_RS06965	0.56	-0.1
1,496,401	+		LRK54_RS06965	0.56	-0.8
1,496,401	+		LRK54_RS06965	0.56	-0.5
1,496,402	-		LRK54_RS06965	0.56	+0.3
1,496,402	-		LRK54_RS06965	0.56	+1.5
1,496,485	+		LRK54_RS06965	0.61	-1.6
1,496,485	+		LRK54_RS06965	0.61	-0.8
1,496,485	+		LRK54_RS06965	0.61	-0.5
1,496,485	+		LRK54_RS06965	0.61	-0.1
1,496,485	+		LRK54_RS06965	0.61	-1.0
1,496,485	+		LRK54_RS06965	0.61	-0.7
1,496,485	+		LRK54_RS06965	0.61	-0.9
1,496,485	+		LRK54_RS06965	0.61	+0.2
1,496,485	+		LRK54_RS06965	0.61	-0.7
1,496,485	+		LRK54_RS06965	0.61	+0.2
1,496,485	+		LRK54_RS06965	0.61	+0.4
1,496,485	+		LRK54_RS06965	0.61	-1.8
1,496,485	+		LRK54_RS06965	0.61	-1.7
1,496,485	+		LRK54_RS06965	0.61	+0.5
1,496,485	+		LRK54_RS06965	0.61	+1.3
1,496,485	+		LRK54_RS06965	0.61	-0.2
1,496,485	+		LRK54_RS06965	0.61	-1.5
1,496,485	+		LRK54_RS06965	0.61	-0.7
1,496,485	+		LRK54_RS06965	0.61	-1.4
1,496,485	+		LRK54_RS06965	0.61	+1.3
1,496,485	+		LRK54_RS06965	0.61	-1.0
1,496,485	+		LRK54_RS06965	0.61	+0.5
1,496,486	-		LRK54_RS06965	0.61	-1.1
1,496,486	-		LRK54_RS06965	0.61	-2.3
1,496,486	-		LRK54_RS06965	0.61	-1.0
1,496,486	-		LRK54_RS06965	0.61	-0.2
1,496,486	-		LRK54_RS06965	0.61	+0.5
1,496,486	-		LRK54_RS06965	0.61	-2.2
1,496,486	-		LRK54_RS06965	0.61	-1.8
1,496,486	-		LRK54_RS06965	0.61	-0.2
1,496,486	-		LRK54_RS06965	0.61	-0.5
1,496,486	-		LRK54_RS06965	0.61	+0.5
1,496,486	-		LRK54_RS06965	0.61	-0.7
1,496,486	-		LRK54_RS06965	0.61	-0.5
1,496,486	-		LRK54_RS06965	0.61	-0.8
1,496,486	-		LRK54_RS06965	0.61	-1.1
1,496,486	-		LRK54_RS06965	0.61	+1.0
1,496,486	-		LRK54_RS06965	0.61	+1.2
1,496,486	-		LRK54_RS06965	0.61	-1.6
1,496,486	-		LRK54_RS06965	0.61	-1.8
1,496,486	-		LRK54_RS06965	0.61	+0.5
1,496,486	-		LRK54_RS06965	0.61	+0.7
1,496,486	-		LRK54_RS06965	0.61	-0.0
1,496,486	-		LRK54_RS06965	0.61	+0.2
1,496,486	-		LRK54_RS06965	0.61	+0.9
1,496,486	-		LRK54_RS06965	0.61	-0.9
1,496,486	-		LRK54_RS06965	0.61	+0.4
1,496,488	+		LRK54_RS06965	0.61	-0.5
1,496,489	-		LRK54_RS06965	0.61	+0.7
1,496,489	-		LRK54_RS06965	0.61	+0.5