Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4180

Experiment: syringaldehyde 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4179 and Ga0059261_4180 are separated by 32 nucleotidesGa0059261_4180 and Ga0059261_4181 are separated by 4 nucleotidesGa0059261_4181 and Ga0059261_4182 are separated by 162 nucleotides Ga0059261_4179: Ga0059261_4179 - Serine proteases of the peptidase family S9A, at 4,329,092 to 4,331,242 _4179 Ga0059261_4180: Ga0059261_4180 - Zn-dependent dipeptidase, microsomal dipeptidase homolog, at 4,331,275 to 4,332,468 _4180 Ga0059261_4181: Ga0059261_4181 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 4,332,473 to 4,333,117 _4181 Ga0059261_4182: Ga0059261_4182 - thioredoxin-disulfide reductase, at 4,333,280 to 4,334,251 _4182 Position (kb) 4331 4332 4333Strain fitness (log2 ratio) -1 0 1 2at 4330.331 kb on + strand, within Ga0059261_4179at 4330.331 kb on + strand, within Ga0059261_4179at 4330.332 kb on - strand, within Ga0059261_4179at 4330.332 kb on - strand, within Ga0059261_4179at 4330.332 kb on - strand, within Ga0059261_4179at 4330.332 kb on - strand, within Ga0059261_4179at 4330.339 kb on + strand, within Ga0059261_4179at 4330.339 kb on + strand, within Ga0059261_4179at 4330.367 kb on + strand, within Ga0059261_4179at 4330.368 kb on - strand, within Ga0059261_4179at 4330.439 kb on + strand, within Ga0059261_4179at 4330.439 kb on + strand, within Ga0059261_4179at 4330.439 kb on + strand, within Ga0059261_4179at 4330.439 kb on + strand, within Ga0059261_4179at 4330.440 kb on - strand, within Ga0059261_4179at 4330.440 kb on - strand, within Ga0059261_4179at 4330.547 kb on + strand, within Ga0059261_4179at 4330.568 kb on + strand, within Ga0059261_4179at 4330.569 kb on - strand, within Ga0059261_4179at 4330.569 kb on - strand, within Ga0059261_4179at 4330.655 kb on + strand, within Ga0059261_4179at 4330.655 kb on + strand, within Ga0059261_4179at 4330.733 kb on + strand, within Ga0059261_4179at 4330.733 kb on + strand, within Ga0059261_4179at 4330.733 kb on + strand, within Ga0059261_4179at 4330.733 kb on + strand, within Ga0059261_4179at 4330.734 kb on - strand, within Ga0059261_4179at 4330.923 kb on - strand, within Ga0059261_4179at 4330.923 kb on - strandat 4330.923 kb on - strand, within Ga0059261_4179at 4330.968 kb on - strand, within Ga0059261_4179at 4330.976 kb on + strand, within Ga0059261_4179at 4331.003 kb on + strand, within Ga0059261_4179at 4331.004 kb on - strand, within Ga0059261_4179at 4331.059 kb on + strandat 4331.059 kb on + strandat 4331.060 kb on - strandat 4331.060 kb on - strandat 4331.069 kb on + strandat 4331.070 kb on - strandat 4331.070 kb on - strandat 4331.070 kb on - strandat 4331.070 kb on - strandat 4331.070 kb on - strandat 4331.070 kb on - strandat 4331.071 kb on + strandat 4331.072 kb on - strandat 4331.275 kb on - strandat 4331.275 kb on - strandat 4331.275 kb on - strandat 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strandat 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strand, within Ga0059261_4180at 4331.530 kb on + strand, within Ga0059261_4180at 4331.531 kb on - strand, within Ga0059261_4180at 4331.531 kb on - strandat 4331.531 kb on - strand, within Ga0059261_4180at 4331.531 kb on - strand, within Ga0059261_4180at 4331.531 kb on - strand, within Ga0059261_4180at 4331.531 kb on - strand, within Ga0059261_4180at 4331.531 kb on - strandat 4331.531 kb on - strand, within Ga0059261_4180at 4331.531 kb on - strand, within Ga0059261_4180at 4331.531 kb on - strand, within Ga0059261_4180at 4331.531 kb on - strand, within Ga0059261_4180at 4331.531 kb on - strand, within Ga0059261_4180at 4331.531 kb on - strand, within Ga0059261_4180at 4331.532 kb on + strand, within Ga0059261_4180at 4331.532 kb on + strand, within Ga0059261_4180at 4331.533 kb on - strand, within Ga0059261_4180at 4331.626 kb on + strand, within Ga0059261_4180at 4331.627 kb on - strand, within Ga0059261_4180at 4331.627 kb on - strand, within Ga0059261_4180at 4331.722 kb on + strand, within Ga0059261_4180at 4331.722 kb on + strand, within Ga0059261_4180at 4331.723 kb on - strand, within Ga0059261_4180at 4331.723 kb on - strand, within Ga0059261_4180at 4331.723 kb on - strand, within Ga0059261_4180at 4331.761 kb on + strand, within Ga0059261_4180at 4331.761 kb on + strand, within Ga0059261_4180at 4331.761 kb on + strand, within Ga0059261_4180at 4331.762 kb on - strand, within Ga0059261_4180at 4331.762 kb on - strand, within Ga0059261_4180at 4331.955 kb on + strand, within Ga0059261_4180at 4331.956 kb on - strand, within Ga0059261_4180at 4331.956 kb on - strand, within Ga0059261_4180at 4332.018 kb on + strand, within Ga0059261_4180at 4332.018 kb on + strand, within Ga0059261_4180at 4332.100 kb on + strandat 4332.100 kb on + strand, within Ga0059261_4180at 4332.101 kb on - strand, within Ga0059261_4180at 4332.101 kb on - strand, within Ga0059261_4180at 4332.101 kb on - strand, within Ga0059261_4180at 4332.101 kb on - strand, within Ga0059261_4180at 4332.103 kb on - strand, within Ga0059261_4180at 4332.103 kb on - strand, within Ga0059261_4180at 4332.103 kb on - strand, within Ga0059261_4180at 4332.103 kb on - strand, within Ga0059261_4180at 4332.256 kb on + strand, within Ga0059261_4180at 4332.256 kb on + strand, within Ga0059261_4180at 4332.256 kb on + strandat 4332.256 kb on + strand, within Ga0059261_4180at 4332.256 kb on + strand, within Ga0059261_4180at 4332.257 kb on - strand, within Ga0059261_4180at 4332.257 kb on - strand, within Ga0059261_4180at 4332.257 kb on - strand, within Ga0059261_4180at 4332.257 kb on - strand, within Ga0059261_4180at 4332.257 kb on - strand, within Ga0059261_4180at 4332.257 kb on - strand, within Ga0059261_4180at 4332.257 kb on - strand, within Ga0059261_4180at 4332.475 kb on - strandat 4332.727 kb on + strand, within Ga0059261_4181at 4332.864 kb on + strand, within Ga0059261_4181at 4332.864 kb on + strandat 4332.864 kb on + strand, within Ga0059261_4181at 4332.865 kb on - strand, within Ga0059261_4181at 4332.865 kb on - strand, within Ga0059261_4181at 4332.900 kb on + strand, within Ga0059261_4181at 4332.900 kb on + strand, within Ga0059261_4181at 4332.900 kb on + strand, within Ga0059261_4181at 4332.900 kb on + strand, within Ga0059261_4181at 4332.900 kb on + strand, within Ga0059261_4181at 4332.900 kb on + strand, within Ga0059261_4181at 4332.900 kb on + strand, within Ga0059261_4181at 4332.901 kb on - strand, within Ga0059261_4181at 4332.901 kb on - strand, within Ga0059261_4181at 4332.901 kb on - strand, within Ga0059261_4181at 4332.901 kb on - strand, within Ga0059261_4181at 4332.901 kb on - strand, within Ga0059261_4181at 4333.234 kb on + strandat 4333.234 kb on + strandat 4333.234 kb on + strandat 4333.234 kb on + strandat 4333.243 kb on + strandat 4333.267 kb on + strandat 4333.267 kb on + strandat 4333.267 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 0.5 mM
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4,330,331 + Ga0059261_4179 0.58 +1.3
4,330,331 + Ga0059261_4179 0.58 +0.1
4,330,332 - Ga0059261_4179 0.58 -0.3
4,330,332 - Ga0059261_4179 0.58 +0.5
4,330,332 - Ga0059261_4179 0.58 -0.2
4,330,332 - Ga0059261_4179 0.58 +1.0
4,330,339 + Ga0059261_4179 0.58 -0.3
4,330,339 + Ga0059261_4179 0.58 -1.0
4,330,367 + Ga0059261_4179 0.59 -0.5
4,330,368 - Ga0059261_4179 0.59 -0.2
4,330,439 + Ga0059261_4179 0.63 -0.7
4,330,439 + Ga0059261_4179 0.63 -0.3
4,330,439 + Ga0059261_4179 0.63 +0.1
4,330,439 + Ga0059261_4179 0.63 +1.1
4,330,440 - Ga0059261_4179 0.63 -0.0
4,330,440 - Ga0059261_4179 0.63 +2.6
4,330,547 + Ga0059261_4179 0.68 -0.3
4,330,568 + Ga0059261_4179 0.69 +0.5
4,330,569 - Ga0059261_4179 0.69 -0.5
4,330,569 - Ga0059261_4179 0.69 +0.5
4,330,655 + Ga0059261_4179 0.73 -0.2
4,330,655 + Ga0059261_4179 0.73 -0.6
4,330,733 + Ga0059261_4179 0.76 +0.0
4,330,733 + Ga0059261_4179 0.76 -0.2
4,330,733 + Ga0059261_4179 0.76 +1.1
4,330,733 + Ga0059261_4179 0.76 +0.1
4,330,734 - Ga0059261_4179 0.76 +1.3
4,330,923 - Ga0059261_4179 0.85 -1.6
4,330,923 - -0.2
4,330,923 - Ga0059261_4179 0.85 +0.0
4,330,968 - Ga0059261_4179 0.87 +0.6
4,330,976 + Ga0059261_4179 0.88 -0.2
4,331,003 + Ga0059261_4179 0.89 +0.3
4,331,004 - Ga0059261_4179 0.89 -0.2
4,331,059 + +0.8
4,331,059 + +0.1
4,331,060 - +1.0
4,331,060 - +0.3
4,331,069 + -0.1
4,331,070 - +0.8
4,331,070 - -0.4
4,331,070 - -0.1
4,331,070 - -0.3
4,331,070 - +0.3
4,331,070 - -0.0
4,331,071 + +0.3
4,331,072 - +0.7
4,331,275 - +0.6
4,331,275 - +0.8
4,331,275 - +0.6
4,331,530 + Ga0059261_4180 0.21 +1.5
4,331,530 + Ga0059261_4180 0.21 -1.5
4,331,530 + Ga0059261_4180 0.21 +0.4
4,331,530 + Ga0059261_4180 0.21 -0.2
4,331,530 + +0.8
4,331,530 + Ga0059261_4180 0.21 -1.3
4,331,530 + Ga0059261_4180 0.21 +0.2
4,331,530 + Ga0059261_4180 0.21 +0.5
4,331,530 + Ga0059261_4180 0.21 +0.6
4,331,530 + Ga0059261_4180 0.21 +0.4
4,331,530 + Ga0059261_4180 0.21 -0.1
4,331,530 + Ga0059261_4180 0.21 +0.9
4,331,530 + Ga0059261_4180 0.21 +0.3
4,331,531 - Ga0059261_4180 0.21 +0.5
4,331,531 - +0.8
4,331,531 - Ga0059261_4180 0.21 -0.1
4,331,531 - Ga0059261_4180 0.21 -0.3
4,331,531 - Ga0059261_4180 0.21 +0.0
4,331,531 - Ga0059261_4180 0.21 -0.2
4,331,531 - +0.2
4,331,531 - Ga0059261_4180 0.21 +1.2
4,331,531 - Ga0059261_4180 0.21 +0.2
4,331,531 - Ga0059261_4180 0.21 +0.2
4,331,531 - Ga0059261_4180 0.21 -1.2
4,331,531 - Ga0059261_4180 0.21 -0.3
4,331,531 - Ga0059261_4180 0.21 +1.3
4,331,532 + Ga0059261_4180 0.22 -0.0
4,331,532 + Ga0059261_4180 0.22 +0.5
4,331,533 - Ga0059261_4180 0.22 +0.1
4,331,626 + Ga0059261_4180 0.29 -1.2
4,331,627 - Ga0059261_4180 0.29 +0.5
4,331,627 - Ga0059261_4180 0.29 -1.3
4,331,722 + Ga0059261_4180 0.37 +1.2
4,331,722 + Ga0059261_4180 0.37 +0.3
4,331,723 - Ga0059261_4180 0.38 -0.3
4,331,723 - Ga0059261_4180 0.38 -1.2
4,331,723 - Ga0059261_4180 0.38 -0.2
4,331,761 + Ga0059261_4180 0.41 +0.4
4,331,761 + Ga0059261_4180 0.41 +0.4
4,331,761 + Ga0059261_4180 0.41 -0.6
4,331,762 - Ga0059261_4180 0.41 -1.0
4,331,762 - Ga0059261_4180 0.41 -0.1
4,331,955 + Ga0059261_4180 0.57 +0.2
4,331,956 - Ga0059261_4180 0.57 +0.5
4,331,956 - Ga0059261_4180 0.57 +0.7
4,332,018 + Ga0059261_4180 0.62 +0.3
4,332,018 + Ga0059261_4180 0.62 -0.3
4,332,100 + +1.8
4,332,100 + Ga0059261_4180 0.69 +0.3
4,332,101 - Ga0059261_4180 0.69 +0.4
4,332,101 - Ga0059261_4180 0.69 +0.5
4,332,101 - Ga0059261_4180 0.69 +0.2
4,332,101 - Ga0059261_4180 0.69 +0.8
4,332,103 - Ga0059261_4180 0.69 +1.8
4,332,103 - Ga0059261_4180 0.69 -0.3
4,332,103 - Ga0059261_4180 0.69 +0.1
4,332,103 - Ga0059261_4180 0.69 +0.7
4,332,256 + Ga0059261_4180 0.82 +0.4
4,332,256 + Ga0059261_4180 0.82 -0.2
4,332,256 + -0.2
4,332,256 + Ga0059261_4180 0.82 -0.1
4,332,256 + Ga0059261_4180 0.82 +0.4
4,332,257 - Ga0059261_4180 0.82 -0.2
4,332,257 - Ga0059261_4180 0.82 -1.0
4,332,257 - Ga0059261_4180 0.82 +0.4
4,332,257 - Ga0059261_4180 0.82 +0.3
4,332,257 - Ga0059261_4180 0.82 -0.0
4,332,257 - Ga0059261_4180 0.82 +0.0
4,332,257 - Ga0059261_4180 0.82 -0.6
4,332,475 - +1.2
4,332,727 + Ga0059261_4181 0.39 +2.2
4,332,864 + Ga0059261_4181 0.61 -0.3
4,332,864 + +1.8
4,332,864 + Ga0059261_4181 0.61 -0.2
4,332,865 - Ga0059261_4181 0.61 +1.0
4,332,865 - Ga0059261_4181 0.61 +1.3
4,332,900 + Ga0059261_4181 0.66 -0.3
4,332,900 + Ga0059261_4181 0.66 -1.2
4,332,900 + Ga0059261_4181 0.66 -0.3
4,332,900 + Ga0059261_4181 0.66 +0.3
4,332,900 + Ga0059261_4181 0.66 +0.5
4,332,900 + Ga0059261_4181 0.66 -0.1
4,332,900 + Ga0059261_4181 0.66 -0.8
4,332,901 - Ga0059261_4181 0.66 +0.4
4,332,901 - Ga0059261_4181 0.66 -0.2
4,332,901 - Ga0059261_4181 0.66 -0.5
4,332,901 - Ga0059261_4181 0.66 -0.0
4,332,901 - Ga0059261_4181 0.66 -0.3
4,333,234 + +0.4
4,333,234 + -0.3
4,333,234 + +0.2
4,333,234 + -0.0
4,333,243 + +0.1
4,333,267 + +0.1
4,333,267 + +0.5
4,333,267 + -0.0

Or see this region's nucleotide sequence