Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1570

Experiment: syringaldehyde 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1567 and Ga0059261_1568 are separated by 161 nucleotidesGa0059261_1568 and Ga0059261_1569 are separated by 69 nucleotidesGa0059261_1569 and Ga0059261_1570 are separated by 168 nucleotidesGa0059261_1570 and Ga0059261_1571 are separated by 361 nucleotides Ga0059261_1567: Ga0059261_1567 - Arabinose efflux permease, at 1,638,867 to 1,640,198 _1567 Ga0059261_1568: Ga0059261_1568 - tRNA, at 1,640,360 to 1,640,434 _1568 Ga0059261_1569: Ga0059261_1569 - Response regulator receiver domain, at 1,640,504 to 1,640,881 _1569 Ga0059261_1570: Ga0059261_1570 - N-formylglutamate amidohydrolase, at 1,641,050 to 1,641,889 _1570 Ga0059261_1571: Ga0059261_1571 - SapC, at 1,642,251 to 1,643,036 _1571 Position (kb) 1641 1642Strain fitness (log2 ratio) -2 -1 0 1 2at 1640.107 kb on + strandat 1640.107 kb on + strandat 1640.107 kb on + strandat 1640.107 kb on + strandat 1640.124 kb on + strandat 1640.124 kb on + strandat 1640.124 kb on + strandat 1640.124 kb on + strandat 1640.124 kb on + strandat 1640.125 kb on - strandat 1640.196 kb on + strandat 1640.196 kb on + strandat 1640.196 kb on + strandat 1640.196 kb on + strandat 1640.196 kb on + strandat 1640.197 kb on - strandat 1640.197 kb on - strandat 1640.197 kb on - strandat 1640.726 kb on - strand, within Ga0059261_1569at 1640.805 kb on + strand, within Ga0059261_1569at 1640.806 kb on - strand, within Ga0059261_1569at 1640.835 kb on + strandat 1640.835 kb on + strand, within Ga0059261_1569at 1640.836 kb on - strand, within Ga0059261_1569at 1640.836 kb on - strand, within Ga0059261_1569at 1640.892 kb on - strandat 1640.892 kb on - strandat 1640.952 kb on + strandat 1640.953 kb on - strandat 1640.967 kb on + strandat 1641.137 kb on + strand, within Ga0059261_1570at 1641.137 kb on + strand, within Ga0059261_1570at 1641.138 kb on - strand, within Ga0059261_1570at 1641.138 kb on - strand, within Ga0059261_1570at 1641.138 kb on - strand, within Ga0059261_1570at 1641.384 kb on + strand, within Ga0059261_1570at 1641.385 kb on - strand, within Ga0059261_1570at 1641.385 kb on - strand, within Ga0059261_1570at 1641.473 kb on + strand, within Ga0059261_1570at 1641.474 kb on - strand, within Ga0059261_1570at 1641.474 kb on - strand, within Ga0059261_1570at 1641.679 kb on + strand, within Ga0059261_1570at 1641.686 kb on + strand, within Ga0059261_1570at 1641.686 kb on + strand, within Ga0059261_1570at 1641.686 kb on + strandat 1641.686 kb on + strand, within Ga0059261_1570at 1641.687 kb on - strand, within Ga0059261_1570at 1641.687 kb on - strand, within Ga0059261_1570at 1641.733 kb on + strand, within Ga0059261_1570at 1641.770 kb on + strand, within Ga0059261_1570at 1641.770 kb on + strand, within Ga0059261_1570at 1641.770 kb on + strand, within Ga0059261_1570at 1641.770 kb on + strand, within Ga0059261_1570at 1641.771 kb on - strand, within Ga0059261_1570at 1641.771 kb on - strandat 1641.771 kb on - strand, within Ga0059261_1570at 1641.771 kb on - strand, within Ga0059261_1570at 1641.887 kb on + strandat 1641.888 kb on - strandat 1642.051 kb on + strandat 1642.051 kb on + strandat 1642.051 kb on + strandat 1642.051 kb on + strandat 1642.051 kb on + strandat 1642.051 kb on + strandat 1642.052 kb on - strandat 1642.052 kb on - strandat 1642.052 kb on - strandat 1642.052 kb on - strandat 1642.052 kb on - strandat 1642.052 kb on - strandat 1642.103 kb on + strandat 1642.103 kb on + strandat 1642.104 kb on - strandat 1642.104 kb on - strandat 1642.104 kb on - strandat 1642.104 kb on - strandat 1642.107 kb on + strandat 1642.107 kb on + strandat 1642.107 kb on + strandat 1642.108 kb on - strandat 1642.108 kb on - strandat 1642.128 kb on - strandat 1642.348 kb on + strand, within Ga0059261_1571at 1642.348 kb on + strand, within Ga0059261_1571at 1642.348 kb on + strand, within Ga0059261_1571at 1642.349 kb on - strand, within Ga0059261_1571at 1642.349 kb on - strand, within Ga0059261_1571at 1642.349 kb on - strand, within Ga0059261_1571at 1642.349 kb on - strand, within Ga0059261_1571at 1642.444 kb on + strand, within Ga0059261_1571at 1642.444 kb on + strand, within Ga0059261_1571at 1642.444 kb on + strand, within Ga0059261_1571at 1642.444 kb on + strand, within Ga0059261_1571at 1642.445 kb on - strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.448 kb on + strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.449 kb on - strand, within Ga0059261_1571at 1642.450 kb on + strand, within Ga0059261_1571at 1642.450 kb on + strand, within Ga0059261_1571at 1642.450 kb on + strand, within Ga0059261_1571at 1642.450 kb on + strand, within Ga0059261_1571at 1642.450 kb on + strand, within Ga0059261_1571at 1642.450 kb on + strand, within Ga0059261_1571at 1642.450 kb on + strand, within Ga0059261_1571at 1642.450 kb on + strand, within Ga0059261_1571at 1642.450 kb on + strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.451 kb on - strand, within Ga0059261_1571at 1642.508 kb on + strand, within Ga0059261_1571at 1642.508 kb on + strand, within Ga0059261_1571at 1642.508 kb on + strand, within Ga0059261_1571at 1642.509 kb on - strand, within Ga0059261_1571at 1642.715 kb on - strand, within Ga0059261_1571at 1642.715 kb on - strandat 1642.715 kb on - strand, within Ga0059261_1571at 1642.715 kb on - strand, within Ga0059261_1571at 1642.732 kb on + strand, within Ga0059261_1571at 1642.732 kb on + strand, within Ga0059261_1571at 1642.732 kb on + strand, within Ga0059261_1571at 1642.733 kb on - strand, within Ga0059261_1571at 1642.733 kb on - strand, within Ga0059261_1571at 1642.733 kb on - strand, within Ga0059261_1571at 1642.744 kb on + strand, within Ga0059261_1571at 1642.744 kb on + strand, within Ga0059261_1571at 1642.745 kb on - strand, within Ga0059261_1571at 1642.745 kb on - strand, within Ga0059261_1571

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 0.5 mM
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1,640,107 + -0.1
1,640,107 + -1.3
1,640,107 + -1.0
1,640,107 + +0.5
1,640,124 + -0.0
1,640,124 + +0.1
1,640,124 + -0.3
1,640,124 + -1.1
1,640,124 + -0.4
1,640,125 - -0.9
1,640,196 + +0.2
1,640,196 + -0.5
1,640,196 + -0.2
1,640,196 + +0.5
1,640,196 + -0.6
1,640,197 - -1.1
1,640,197 - +0.7
1,640,197 - -1.7
1,640,726 - Ga0059261_1569 0.59 -2.0
1,640,805 + Ga0059261_1569 0.80 +0.2
1,640,806 - Ga0059261_1569 0.80 -0.7
1,640,835 + -0.6
1,640,835 + Ga0059261_1569 0.88 -2.1
1,640,836 - Ga0059261_1569 0.88 +0.5
1,640,836 - Ga0059261_1569 0.88 +0.1
1,640,892 - -0.6
1,640,892 - +1.3
1,640,952 + +0.3
1,640,953 - +0.5
1,640,967 + +0.4
1,641,137 + Ga0059261_1570 0.10 +0.8
1,641,137 + Ga0059261_1570 0.10 +0.6
1,641,138 - Ga0059261_1570 0.10 -0.2
1,641,138 - Ga0059261_1570 0.10 -1.2
1,641,138 - Ga0059261_1570 0.10 +0.5
1,641,384 + Ga0059261_1570 0.40 +1.4
1,641,385 - Ga0059261_1570 0.40 -0.1
1,641,385 - Ga0059261_1570 0.40 +0.3
1,641,473 + Ga0059261_1570 0.50 +0.6
1,641,474 - Ga0059261_1570 0.50 +1.0
1,641,474 - Ga0059261_1570 0.50 +0.3
1,641,679 + Ga0059261_1570 0.75 -0.0
1,641,686 + Ga0059261_1570 0.76 -0.2
1,641,686 + Ga0059261_1570 0.76 -0.0
1,641,686 + +0.5
1,641,686 + Ga0059261_1570 0.76 +0.2
1,641,687 - Ga0059261_1570 0.76 +0.4
1,641,687 - Ga0059261_1570 0.76 +0.5
1,641,733 + Ga0059261_1570 0.81 -0.4
1,641,770 + Ga0059261_1570 0.86 -0.0
1,641,770 + Ga0059261_1570 0.86 +0.3
1,641,770 + Ga0059261_1570 0.86 +0.1
1,641,770 + Ga0059261_1570 0.86 +1.0
1,641,771 - Ga0059261_1570 0.86 +0.2
1,641,771 - -1.0
1,641,771 - Ga0059261_1570 0.86 -0.5
1,641,771 - Ga0059261_1570 0.86 +0.1
1,641,887 + -0.4
1,641,888 - -0.5
1,642,051 + -0.0
1,642,051 + +0.2
1,642,051 + -0.0
1,642,051 + +0.4
1,642,051 + +0.5
1,642,051 + +0.2
1,642,052 - -0.5
1,642,052 - -0.3
1,642,052 - +0.5
1,642,052 - +0.5
1,642,052 - -0.0
1,642,052 - -0.3
1,642,103 + -0.3
1,642,103 + +0.1
1,642,104 - +0.0
1,642,104 - -0.1
1,642,104 - +0.4
1,642,104 - +0.5
1,642,107 + +0.4
1,642,107 + +0.1
1,642,107 + -0.2
1,642,108 - +1.5
1,642,108 - -1.0
1,642,128 - -0.2
1,642,348 + Ga0059261_1571 0.12 +0.2
1,642,348 + Ga0059261_1571 0.12 +0.3
1,642,348 + Ga0059261_1571 0.12 +0.5
1,642,349 - Ga0059261_1571 0.12 -0.4
1,642,349 - Ga0059261_1571 0.12 +0.3
1,642,349 - Ga0059261_1571 0.12 +1.0
1,642,349 - Ga0059261_1571 0.12 -0.0
1,642,444 + Ga0059261_1571 0.25 +1.1
1,642,444 + Ga0059261_1571 0.25 -0.0
1,642,444 + Ga0059261_1571 0.25 +1.0
1,642,444 + Ga0059261_1571 0.25 +0.3
1,642,445 - Ga0059261_1571 0.25 +0.8
1,642,448 + Ga0059261_1571 0.25 +0.3
1,642,448 + Ga0059261_1571 0.25 +0.5
1,642,448 + Ga0059261_1571 0.25 +0.2
1,642,448 + Ga0059261_1571 0.25 -0.0
1,642,448 + Ga0059261_1571 0.25 -0.1
1,642,448 + Ga0059261_1571 0.25 +0.7
1,642,448 + Ga0059261_1571 0.25 +0.9
1,642,448 + Ga0059261_1571 0.25 +0.4
1,642,448 + Ga0059261_1571 0.25 +0.4
1,642,448 + Ga0059261_1571 0.25 -0.8
1,642,448 + Ga0059261_1571 0.25 +0.7
1,642,448 + Ga0059261_1571 0.25 +0.7
1,642,448 + Ga0059261_1571 0.25 +0.3
1,642,448 + Ga0059261_1571 0.25 +0.5
1,642,448 + Ga0059261_1571 0.25 -0.1
1,642,448 + Ga0059261_1571 0.25 -0.0
1,642,448 + Ga0059261_1571 0.25 -0.1
1,642,448 + Ga0059261_1571 0.25 -0.1
1,642,448 + Ga0059261_1571 0.25 +0.0
1,642,448 + Ga0059261_1571 0.25 -0.2
1,642,449 - Ga0059261_1571 0.25 -0.5
1,642,449 - Ga0059261_1571 0.25 +0.7
1,642,449 - Ga0059261_1571 0.25 -0.8
1,642,449 - Ga0059261_1571 0.25 -0.3
1,642,449 - Ga0059261_1571 0.25 +0.8
1,642,449 - Ga0059261_1571 0.25 -0.3
1,642,449 - Ga0059261_1571 0.25 +0.4
1,642,449 - Ga0059261_1571 0.25 +1.0
1,642,449 - Ga0059261_1571 0.25 -0.5
1,642,449 - Ga0059261_1571 0.25 -0.1
1,642,449 - Ga0059261_1571 0.25 +1.1
1,642,449 - Ga0059261_1571 0.25 -0.2
1,642,449 - Ga0059261_1571 0.25 +1.0
1,642,449 - Ga0059261_1571 0.25 -0.6
1,642,449 - Ga0059261_1571 0.25 +0.0
1,642,449 - Ga0059261_1571 0.25 +0.5
1,642,449 - Ga0059261_1571 0.25 -0.0
1,642,449 - Ga0059261_1571 0.25 +0.8
1,642,449 - Ga0059261_1571 0.25 -0.2
1,642,449 - Ga0059261_1571 0.25 +0.4
1,642,449 - Ga0059261_1571 0.25 +0.9
1,642,450 + Ga0059261_1571 0.25 -0.0
1,642,450 + Ga0059261_1571 0.25 -0.7
1,642,450 + Ga0059261_1571 0.25 -0.5
1,642,450 + Ga0059261_1571 0.25 -1.0
1,642,450 + Ga0059261_1571 0.25 +0.0
1,642,450 + Ga0059261_1571 0.25 +1.0
1,642,450 + Ga0059261_1571 0.25 +0.4
1,642,450 + Ga0059261_1571 0.25 +0.1
1,642,450 + Ga0059261_1571 0.25 -0.3
1,642,451 - Ga0059261_1571 0.25 -0.0
1,642,451 - Ga0059261_1571 0.25 +0.1
1,642,451 - Ga0059261_1571 0.25 +0.0
1,642,451 - Ga0059261_1571 0.25 +0.4
1,642,451 - Ga0059261_1571 0.25 -2.0
1,642,451 - Ga0059261_1571 0.25 -0.5
1,642,451 - Ga0059261_1571 0.25 +0.4
1,642,451 - Ga0059261_1571 0.25 +0.7
1,642,451 - Ga0059261_1571 0.25 +0.8
1,642,451 - Ga0059261_1571 0.25 +0.2
1,642,451 - Ga0059261_1571 0.25 +0.6
1,642,508 + Ga0059261_1571 0.33 -0.3
1,642,508 + Ga0059261_1571 0.33 +0.4
1,642,508 + Ga0059261_1571 0.33 -0.3
1,642,509 - Ga0059261_1571 0.33 +0.3
1,642,715 - Ga0059261_1571 0.59 -0.3
1,642,715 - +1.8
1,642,715 - Ga0059261_1571 0.59 -0.3
1,642,715 - Ga0059261_1571 0.59 -0.5
1,642,732 + Ga0059261_1571 0.61 +0.8
1,642,732 + Ga0059261_1571 0.61 -0.0
1,642,732 + Ga0059261_1571 0.61 +0.2
1,642,733 - Ga0059261_1571 0.61 -0.1
1,642,733 - Ga0059261_1571 0.61 -0.0
1,642,733 - Ga0059261_1571 0.61 -0.2
1,642,744 + Ga0059261_1571 0.63 -0.4
1,642,744 + Ga0059261_1571 0.63 -0.0
1,642,745 - Ga0059261_1571 0.63 -0.8
1,642,745 - Ga0059261_1571 0.63 -0.0

Or see this region's nucleotide sequence