Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0742

Experiment: syringaldehyde 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0741 and Ga0059261_0742 are separated by 16 nucleotidesGa0059261_0742 and Ga0059261_0743 overlap by 4 nucleotides Ga0059261_0741: Ga0059261_0741 - Domain of unknown function (DUF4403), at 770,758 to 772,281 _0741 Ga0059261_0742: Ga0059261_0742 - Uncharacterized small membrane protein, at 772,298 to 772,627 _0742 Ga0059261_0743: Ga0059261_0743 - Kef-type K+ transport systems, membrane components, at 772,624 to 774,441 _0743 Position (kb) 772 773Strain fitness (log2 ratio) -1 0 1 2at 771.386 kb on + strand, within Ga0059261_0741at 771.386 kb on + strand, within Ga0059261_0741at 771.386 kb on + strand, within Ga0059261_0741at 771.386 kb on + strand, within Ga0059261_0741at 771.386 kb on + strand, within Ga0059261_0741at 771.386 kb on + strand, within Ga0059261_0741at 771.387 kb on - strand, within Ga0059261_0741at 771.387 kb on - strand, within Ga0059261_0741at 771.387 kb on - strand, within Ga0059261_0741at 771.387 kb on - strand, within Ga0059261_0741at 771.387 kb on - strand, within Ga0059261_0741at 771.387 kb on - strand, within Ga0059261_0741at 771.387 kb on - strand, within Ga0059261_0741at 771.387 kb on - strand, within Ga0059261_0741at 771.387 kb on - strand, within Ga0059261_0741at 771.387 kb on - strand, within Ga0059261_0741at 771.551 kb on + strand, within Ga0059261_0741at 771.551 kb on + strand, within Ga0059261_0741at 771.795 kb on + strand, within Ga0059261_0741at 771.795 kb on + strand, within Ga0059261_0741at 771.795 kb on + strand, within Ga0059261_0741at 771.795 kb on + strand, within Ga0059261_0741at 771.795 kb on + strand, within Ga0059261_0741at 771.795 kb on + strand, within Ga0059261_0741at 771.795 kb on + strand, within Ga0059261_0741at 771.795 kb on + strand, within Ga0059261_0741at 771.796 kb on - strand, within Ga0059261_0741at 771.796 kb on - strand, within Ga0059261_0741at 771.796 kb on - strand, within Ga0059261_0741at 771.796 kb on - strand, within Ga0059261_0741at 771.797 kb on + strand, within Ga0059261_0741at 771.797 kb on + strand, within Ga0059261_0741at 771.798 kb on - strand, within Ga0059261_0741at 771.798 kb on - strand, within Ga0059261_0741at 771.909 kb on + strand, within Ga0059261_0741at 771.981 kb on + strand, within Ga0059261_0741at 771.982 kb on - strandat 771.982 kb on - strand, within Ga0059261_0741at 772.021 kb on - strand, within Ga0059261_0741at 772.084 kb on + strand, within Ga0059261_0741at 772.085 kb on - strand, within Ga0059261_0741at 772.085 kb on - strand, within Ga0059261_0741at 772.249 kb on + strandat 772.250 kb on - strandat 772.250 kb on - strandat 772.250 kb on - strandat 772.250 kb on - strandat 772.250 kb on - strandat 772.325 kb on + strandat 772.325 kb on + strandat 772.326 kb on - strandat 772.326 kb on - strandat 772.326 kb on - strandat 772.326 kb on - strandat 772.404 kb on + strand, within Ga0059261_0742at 772.404 kb on + strand, within Ga0059261_0742at 772.404 kb on + strandat 772.404 kb on + strand, within Ga0059261_0742at 772.405 kb on - strand, within Ga0059261_0742at 772.405 kb on - strand, within Ga0059261_0742at 772.405 kb on - strand, within Ga0059261_0742at 772.405 kb on - strand, within Ga0059261_0742at 772.509 kb on + strand, within Ga0059261_0742at 772.509 kb on + strand, within Ga0059261_0742at 772.510 kb on - strand, within Ga0059261_0742at 772.510 kb on - strand, within Ga0059261_0742at 772.510 kb on - strand, within Ga0059261_0742at 772.510 kb on - strand, within Ga0059261_0742at 772.510 kb on - strand, within Ga0059261_0742at 772.510 kb on - strand, within Ga0059261_0742at 772.781 kb on + strandat 772.929 kb on - strand, within Ga0059261_0743at 772.929 kb on - strand, within Ga0059261_0743at 773.081 kb on + strand, within Ga0059261_0743at 773.081 kb on + strand, within Ga0059261_0743at 773.084 kb on + strand, within Ga0059261_0743at 773.084 kb on + strand, within Ga0059261_0743at 773.085 kb on - strand, within Ga0059261_0743at 773.085 kb on - strand, within Ga0059261_0743at 773.085 kb on - strand, within Ga0059261_0743at 773.085 kb on - strand, within Ga0059261_0743at 773.085 kb on - strand, within Ga0059261_0743at 773.085 kb on - strand, within Ga0059261_0743at 773.085 kb on - strand, within Ga0059261_0743at 773.085 kb on - strand, within Ga0059261_0743at 773.124 kb on - strand, within Ga0059261_0743

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 0.5 mM
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771,386 + Ga0059261_0741 0.41 -0.1
771,386 + Ga0059261_0741 0.41 +0.3
771,386 + Ga0059261_0741 0.41 -0.1
771,386 + Ga0059261_0741 0.41 -0.0
771,386 + Ga0059261_0741 0.41 -1.6
771,386 + Ga0059261_0741 0.41 +0.5
771,387 - Ga0059261_0741 0.41 -0.8
771,387 - Ga0059261_0741 0.41 +0.4
771,387 - Ga0059261_0741 0.41 +0.2
771,387 - Ga0059261_0741 0.41 +0.9
771,387 - Ga0059261_0741 0.41 +0.2
771,387 - Ga0059261_0741 0.41 +0.2
771,387 - Ga0059261_0741 0.41 +1.5
771,387 - Ga0059261_0741 0.41 +1.1
771,387 - Ga0059261_0741 0.41 -0.1
771,387 - Ga0059261_0741 0.41 +0.0
771,551 + Ga0059261_0741 0.52 -0.0
771,551 + Ga0059261_0741 0.52 -0.2
771,795 + Ga0059261_0741 0.68 +1.2
771,795 + Ga0059261_0741 0.68 -0.7
771,795 + Ga0059261_0741 0.68 +0.2
771,795 + Ga0059261_0741 0.68 -0.1
771,795 + Ga0059261_0741 0.68 -0.1
771,795 + Ga0059261_0741 0.68 +0.6
771,795 + Ga0059261_0741 0.68 -0.5
771,795 + Ga0059261_0741 0.68 -1.1
771,796 - Ga0059261_0741 0.68 +0.3
771,796 - Ga0059261_0741 0.68 +0.2
771,796 - Ga0059261_0741 0.68 -0.5
771,796 - Ga0059261_0741 0.68 +1.0
771,797 + Ga0059261_0741 0.68 +0.9
771,797 + Ga0059261_0741 0.68 -0.4
771,798 - Ga0059261_0741 0.68 -0.0
771,798 - Ga0059261_0741 0.68 -0.8
771,909 + Ga0059261_0741 0.76 +0.7
771,981 + Ga0059261_0741 0.80 -1.7
771,982 - -0.7
771,982 - Ga0059261_0741 0.80 +1.2
772,021 - Ga0059261_0741 0.83 +0.4
772,084 + Ga0059261_0741 0.87 -0.4
772,085 - Ga0059261_0741 0.87 -0.1
772,085 - Ga0059261_0741 0.87 -1.5
772,249 + +0.4
772,250 - -0.7
772,250 - +0.2
772,250 - +0.4
772,250 - +0.1
772,250 - +0.8
772,325 + -0.6
772,325 + -0.1
772,326 - +1.9
772,326 - -0.1
772,326 - +1.4
772,326 - -0.6
772,404 + Ga0059261_0742 0.32 +0.1
772,404 + Ga0059261_0742 0.32 +0.5
772,404 + +1.4
772,404 + Ga0059261_0742 0.32 +1.3
772,405 - Ga0059261_0742 0.32 +1.9
772,405 - Ga0059261_0742 0.32 +0.1
772,405 - Ga0059261_0742 0.32 -1.1
772,405 - Ga0059261_0742 0.32 +0.0
772,509 + Ga0059261_0742 0.64 +0.1
772,509 + Ga0059261_0742 0.64 -0.3
772,510 - Ga0059261_0742 0.64 +0.3
772,510 - Ga0059261_0742 0.64 +0.8
772,510 - Ga0059261_0742 0.64 +0.2
772,510 - Ga0059261_0742 0.64 +0.6
772,510 - Ga0059261_0742 0.64 +0.1
772,510 - Ga0059261_0742 0.64 +0.2
772,781 + -0.6
772,929 - Ga0059261_0743 0.17 -0.5
772,929 - Ga0059261_0743 0.17 +0.3
773,081 + Ga0059261_0743 0.25 -0.3
773,081 + Ga0059261_0743 0.25 -0.2
773,084 + Ga0059261_0743 0.25 -0.5
773,084 + Ga0059261_0743 0.25 -0.1
773,085 - Ga0059261_0743 0.25 +1.1
773,085 - Ga0059261_0743 0.25 +0.3
773,085 - Ga0059261_0743 0.25 +1.2
773,085 - Ga0059261_0743 0.25 +0.6
773,085 - Ga0059261_0743 0.25 -0.1
773,085 - Ga0059261_0743 0.25 +0.7
773,085 - Ga0059261_0743 0.25 +0.2
773,085 - Ga0059261_0743 0.25 +1.1
773,124 - Ga0059261_0743 0.28 -0.0

Or see this region's nucleotide sequence