Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0585

Experiment: syringaldehyde 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0583 and Ga0059261_0584 overlap by 32 nucleotidesGa0059261_0584 and Ga0059261_0585 are separated by 315 nucleotidesGa0059261_0585 and Ga0059261_0586 are separated by 3 nucleotidesGa0059261_0586 and Ga0059261_0587 are separated by 46 nucleotides Ga0059261_0583: Ga0059261_0583 - FecR family protein, at 613,578 to 614,567 _0583 Ga0059261_0584: Ga0059261_0584 - RNA polymerase sigma factor, sigma-70 family, at 614,536 to 615,138 _0584 Ga0059261_0585: Ga0059261_0585 - Predicted membrane protein (DUF2306), at 615,454 to 616,299 _0585 Ga0059261_0586: Ga0059261_0586 - hypothetical protein, at 616,303 to 616,438 _0586 Ga0059261_0587: Ga0059261_0587 - Polysaccharide deacetylase, at 616,485 to 617,579 _0587 Position (kb) 615 616 617Strain fitness (log2 ratio) -2 -1 0 1 2at 614.542 kb on + strandat 614.542 kb on + strandat 614.542 kb on + strandat 614.543 kb on - strandat 614.543 kb on - strandat 614.543 kb on - strandat 614.543 kb on - strandat 614.543 kb on - strandat 614.543 kb on - strandat 614.543 kb on - strandat 614.569 kb on + strandat 614.569 kb on + strandat 614.569 kb on + strandat 614.569 kb on + strandat 614.569 kb on + strandat 614.570 kb on - strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.577 kb on + strandat 614.578 kb on - strandat 614.578 kb on - strandat 614.578 kb on - strandat 614.578 kb on - strandat 614.578 kb on - strandat 614.578 kb on - strandat 614.599 kb on - strand, within Ga0059261_0584at 614.667 kb on + strand, within Ga0059261_0584at 614.667 kb on + strand, within Ga0059261_0584at 614.667 kb on + strand, within Ga0059261_0584at 614.667 kb on + strand, within Ga0059261_0584at 614.667 kb on + strand, within Ga0059261_0584at 614.667 kb on + strand, within Ga0059261_0584at 614.667 kb on + strand, within Ga0059261_0584at 614.667 kb on + strand, within Ga0059261_0584at 614.667 kb on + strand, within Ga0059261_0584at 614.667 kb on + strand, within Ga0059261_0584at 614.668 kb on - strand, within Ga0059261_0584at 614.668 kb on - strand, within Ga0059261_0584at 614.668 kb on - strand, within Ga0059261_0584at 614.668 kb on - strand, within Ga0059261_0584at 614.668 kb on - strand, within Ga0059261_0584at 614.668 kb on - strand, within Ga0059261_0584at 614.668 kb on - strand, within Ga0059261_0584at 614.668 kb on - strand, within Ga0059261_0584at 614.824 kb on + strand, within Ga0059261_0584at 614.824 kb on + strand, within Ga0059261_0584at 614.843 kb on + strand, within Ga0059261_0584at 614.843 kb on + strand, within Ga0059261_0584at 614.843 kb on + strand, within Ga0059261_0584at 614.844 kb on - strand, within Ga0059261_0584at 614.844 kb on - strand, within Ga0059261_0584at 614.844 kb on - strand, within Ga0059261_0584at 614.951 kb on + strand, within Ga0059261_0584at 614.951 kb on + strand, within Ga0059261_0584at 615.005 kb on + strand, within Ga0059261_0584at 615.006 kb on - strand, within Ga0059261_0584at 615.006 kb on - strand, within Ga0059261_0584at 615.006 kb on - strand, within Ga0059261_0584at 615.143 kb on + strandat 615.144 kb on - strandat 615.144 kb on - strandat 615.144 kb on - strandat 615.376 kb on + strandat 615.376 kb on + strandat 615.376 kb on + strandat 615.377 kb on - strandat 615.410 kb on + strandat 615.411 kb on - strandat 615.545 kb on + strand, within Ga0059261_0585at 615.546 kb on - strand, within Ga0059261_0585at 615.546 kb on - strand, within Ga0059261_0585at 615.546 kb on - strand, within Ga0059261_0585at 615.658 kb on + strand, within Ga0059261_0585at 615.659 kb on - strand, within Ga0059261_0585at 615.766 kb on + strand, within Ga0059261_0585at 615.766 kb on + strand, within Ga0059261_0585at 615.766 kb on + strand, within Ga0059261_0585at 615.767 kb on - strand, within Ga0059261_0585at 615.767 kb on - strand, within Ga0059261_0585at 615.767 kb on - strand, within Ga0059261_0585at 615.767 kb on - strand, within Ga0059261_0585at 615.767 kb on - strand, within Ga0059261_0585at 615.902 kb on - strand, within Ga0059261_0585at 615.919 kb on - strand, within Ga0059261_0585at 615.919 kb on - strand, within Ga0059261_0585at 615.919 kb on - strand, within Ga0059261_0585at 616.033 kb on + strand, within Ga0059261_0585at 616.033 kb on + strand, within Ga0059261_0585at 616.034 kb on - strand, within Ga0059261_0585at 616.128 kb on + strand, within Ga0059261_0585at 616.247 kb on + strandat 616.247 kb on + strandat 616.248 kb on - strandat 616.254 kb on + strandat 616.298 kb on - strandat 616.333 kb on + strand, within Ga0059261_0586at 616.334 kb on - strand, within Ga0059261_0586at 616.359 kb on + strand, within Ga0059261_0586at 616.359 kb on + strand, within Ga0059261_0586at 616.359 kb on + strand, within Ga0059261_0586at 616.359 kb on + strand, within Ga0059261_0586at 616.359 kb on + strand, within Ga0059261_0586at 616.360 kb on - strand, within Ga0059261_0586at 616.381 kb on - strand, within Ga0059261_0586at 616.437 kb on + strandat 616.437 kb on + strandat 616.437 kb on + strandat 616.437 kb on + strandat 616.438 kb on - strandat 616.438 kb on - strandat 616.438 kb on - strandat 616.438 kb on - strandat 616.438 kb on - strandat 616.586 kb on - strandat 616.617 kb on - strand, within Ga0059261_0587at 616.666 kb on + strand, within Ga0059261_0587at 616.666 kb on + strand, within Ga0059261_0587at 616.667 kb on - strand, within Ga0059261_0587at 616.667 kb on - strandat 616.667 kb on - strandat 616.667 kb on - strand, within Ga0059261_0587at 616.843 kb on + strand, within Ga0059261_0587at 616.843 kb on + strand, within Ga0059261_0587at 616.843 kb on + strand, within Ga0059261_0587at 616.843 kb on + strand, within Ga0059261_0587at 616.844 kb on - strand, within Ga0059261_0587at 616.844 kb on - strand, within Ga0059261_0587at 616.969 kb on + strand, within Ga0059261_0587at 616.969 kb on + strand, within Ga0059261_0587at 616.969 kb on + strand, within Ga0059261_0587at 616.969 kb on + strand, within Ga0059261_0587at 616.970 kb on - strand, within Ga0059261_0587at 616.970 kb on - strand, within Ga0059261_0587at 616.970 kb on - strand, within Ga0059261_0587at 617.096 kb on + strand, within Ga0059261_0587at 617.096 kb on + strand, within Ga0059261_0587at 617.096 kb on + strand, within Ga0059261_0587at 617.096 kb on + strand, within Ga0059261_0587at 617.096 kb on + strand, within Ga0059261_0587at 617.097 kb on - strand, within Ga0059261_0587at 617.097 kb on - strand, within Ga0059261_0587at 617.097 kb on - strand, within Ga0059261_0587at 617.097 kb on - strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.098 kb on + strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.099 kb on - strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.101 kb on + strand, within Ga0059261_0587at 617.102 kb on - strand, within Ga0059261_0587at 617.102 kb on - strand, within Ga0059261_0587at 617.102 kb on - strand, within Ga0059261_0587at 617.225 kb on - strand, within Ga0059261_0587at 617.225 kb on - strand, within Ga0059261_0587at 617.248 kb on + strand, within Ga0059261_0587at 617.248 kb on + strand, within Ga0059261_0587at 617.249 kb on - strand, within Ga0059261_0587at 617.249 kb on - strand, within Ga0059261_0587

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 0.5 mM
remove
614,542 + +0.1
614,542 + +0.4
614,542 + +0.1
614,543 - -0.4
614,543 - -0.3
614,543 - +1.4
614,543 - +1.8
614,543 - +0.3
614,543 - +0.3
614,543 - +0.3
614,569 + -0.5
614,569 + -1.2
614,569 + -0.2
614,569 + -0.3
614,569 + +0.1
614,570 - -0.2
614,577 + +0.5
614,577 + -1.5
614,577 + -0.4
614,577 + +0.3
614,577 + +0.1
614,577 + -0.1
614,577 + +0.3
614,577 + -0.2
614,577 + -0.3
614,577 + -0.1
614,577 + -1.4
614,577 + +0.7
614,577 + +0.3
614,577 + -0.0
614,578 - +0.8
614,578 - +0.2
614,578 - +0.1
614,578 - +0.4
614,578 - -0.7
614,578 - -0.5
614,599 - Ga0059261_0584 0.10 -0.5
614,667 + Ga0059261_0584 0.22 -0.2
614,667 + Ga0059261_0584 0.22 -0.4
614,667 + Ga0059261_0584 0.22 -1.3
614,667 + Ga0059261_0584 0.22 +0.4
614,667 + Ga0059261_0584 0.22 -0.6
614,667 + Ga0059261_0584 0.22 +1.3
614,667 + Ga0059261_0584 0.22 -0.3
614,667 + Ga0059261_0584 0.22 +0.1
614,667 + Ga0059261_0584 0.22 -2.2
614,667 + Ga0059261_0584 0.22 -1.2
614,668 - Ga0059261_0584 0.22 -0.2
614,668 - Ga0059261_0584 0.22 +0.1
614,668 - Ga0059261_0584 0.22 -0.3
614,668 - Ga0059261_0584 0.22 +0.9
614,668 - Ga0059261_0584 0.22 +0.2
614,668 - Ga0059261_0584 0.22 +0.1
614,668 - Ga0059261_0584 0.22 -0.0
614,668 - Ga0059261_0584 0.22 +0.2
614,824 + Ga0059261_0584 0.48 -0.1
614,824 + Ga0059261_0584 0.48 +0.8
614,843 + Ga0059261_0584 0.51 -0.1
614,843 + Ga0059261_0584 0.51 +0.4
614,843 + Ga0059261_0584 0.51 +0.4
614,844 - Ga0059261_0584 0.51 -0.2
614,844 - Ga0059261_0584 0.51 -0.6
614,844 - Ga0059261_0584 0.51 -0.7
614,951 + Ga0059261_0584 0.69 -0.3
614,951 + Ga0059261_0584 0.69 -0.4
615,005 + Ga0059261_0584 0.78 +0.4
615,006 - Ga0059261_0584 0.78 -0.1
615,006 - Ga0059261_0584 0.78 -0.7
615,006 - Ga0059261_0584 0.78 -0.5
615,143 + -0.6
615,144 - -0.1
615,144 - +0.3
615,144 - +0.8
615,376 + -0.1
615,376 + +0.6
615,376 + +0.4
615,377 - +0.1
615,410 + -2.2
615,411 - +1.5
615,545 + Ga0059261_0585 0.11 +0.0
615,546 - Ga0059261_0585 0.11 -1.3
615,546 - Ga0059261_0585 0.11 +0.2
615,546 - Ga0059261_0585 0.11 -0.2
615,658 + Ga0059261_0585 0.24 +1.2
615,659 - Ga0059261_0585 0.24 +0.6
615,766 + Ga0059261_0585 0.37 -0.3
615,766 + Ga0059261_0585 0.37 -0.0
615,766 + Ga0059261_0585 0.37 +0.8
615,767 - Ga0059261_0585 0.37 +0.8
615,767 - Ga0059261_0585 0.37 +0.4
615,767 - Ga0059261_0585 0.37 -0.0
615,767 - Ga0059261_0585 0.37 -0.4
615,767 - Ga0059261_0585 0.37 -0.5
615,902 - Ga0059261_0585 0.53 -1.2
615,919 - Ga0059261_0585 0.55 -0.0
615,919 - Ga0059261_0585 0.55 +0.3
615,919 - Ga0059261_0585 0.55 +2.4
616,033 + Ga0059261_0585 0.68 -0.6
616,033 + Ga0059261_0585 0.68 +0.8
616,034 - Ga0059261_0585 0.69 +0.3
616,128 + Ga0059261_0585 0.80 +0.3
616,247 + +0.8
616,247 + +0.9
616,248 - -0.8
616,254 + +0.3
616,298 - -0.2
616,333 + Ga0059261_0586 0.22 -0.4
616,334 - Ga0059261_0586 0.23 -0.4
616,359 + Ga0059261_0586 0.41 -0.1
616,359 + Ga0059261_0586 0.41 +0.6
616,359 + Ga0059261_0586 0.41 +0.7
616,359 + Ga0059261_0586 0.41 +0.1
616,359 + Ga0059261_0586 0.41 -0.2
616,360 - Ga0059261_0586 0.42 +0.1
616,381 - Ga0059261_0586 0.57 +0.1
616,437 + +0.1
616,437 + +1.0
616,437 + -0.8
616,437 + -1.2
616,438 - +0.5
616,438 - +0.4
616,438 - +0.2
616,438 - -0.4
616,438 - -0.2
616,586 - +0.9
616,617 - Ga0059261_0587 0.12 -0.2
616,666 + Ga0059261_0587 0.17 -0.5
616,666 + Ga0059261_0587 0.17 -0.2
616,667 - Ga0059261_0587 0.17 +0.1
616,667 - +2.1
616,667 - -1.2
616,667 - Ga0059261_0587 0.17 +0.4
616,843 + Ga0059261_0587 0.33 +0.6
616,843 + Ga0059261_0587 0.33 -0.4
616,843 + Ga0059261_0587 0.33 +0.0
616,843 + Ga0059261_0587 0.33 +0.0
616,844 - Ga0059261_0587 0.33 -0.0
616,844 - Ga0059261_0587 0.33 -0.4
616,969 + Ga0059261_0587 0.44 +0.7
616,969 + Ga0059261_0587 0.44 -0.2
616,969 + Ga0059261_0587 0.44 -0.1
616,969 + Ga0059261_0587 0.44 +0.1
616,970 - Ga0059261_0587 0.44 +1.3
616,970 - Ga0059261_0587 0.44 -0.5
616,970 - Ga0059261_0587 0.44 +0.1
617,096 + Ga0059261_0587 0.56 +0.5
617,096 + Ga0059261_0587 0.56 +0.4
617,096 + Ga0059261_0587 0.56 +0.1
617,096 + Ga0059261_0587 0.56 +0.3
617,096 + Ga0059261_0587 0.56 +0.0
617,097 - Ga0059261_0587 0.56 -0.5
617,097 - Ga0059261_0587 0.56 +0.5
617,097 - Ga0059261_0587 0.56 +0.3
617,097 - Ga0059261_0587 0.56 -0.9
617,098 + Ga0059261_0587 0.56 -0.2
617,098 + Ga0059261_0587 0.56 +0.1
617,098 + Ga0059261_0587 0.56 +0.8
617,098 + Ga0059261_0587 0.56 +0.1
617,098 + Ga0059261_0587 0.56 -1.1
617,098 + Ga0059261_0587 0.56 +0.1
617,098 + Ga0059261_0587 0.56 -1.2
617,098 + Ga0059261_0587 0.56 -0.1
617,098 + Ga0059261_0587 0.56 -0.0
617,099 - Ga0059261_0587 0.56 +0.2
617,099 - Ga0059261_0587 0.56 +0.2
617,099 - Ga0059261_0587 0.56 -0.2
617,099 - Ga0059261_0587 0.56 -0.3
617,099 - Ga0059261_0587 0.56 -1.1
617,099 - Ga0059261_0587 0.56 -0.6
617,099 - Ga0059261_0587 0.56 -0.1
617,099 - Ga0059261_0587 0.56 -0.4
617,101 + Ga0059261_0587 0.56 -1.1
617,101 + Ga0059261_0587 0.56 +0.2
617,101 + Ga0059261_0587 0.56 -0.3
617,101 + Ga0059261_0587 0.56 -0.4
617,101 + Ga0059261_0587 0.56 +0.8
617,101 + Ga0059261_0587 0.56 +0.6
617,101 + Ga0059261_0587 0.56 -0.4
617,101 + Ga0059261_0587 0.56 +0.1
617,102 - Ga0059261_0587 0.56 -0.5
617,102 - Ga0059261_0587 0.56 -0.4
617,102 - Ga0059261_0587 0.56 -0.0
617,225 - Ga0059261_0587 0.68 +0.4
617,225 - Ga0059261_0587 0.68 -0.9
617,248 + Ga0059261_0587 0.70 -0.5
617,248 + Ga0059261_0587 0.70 -0.4
617,249 - Ga0059261_0587 0.70 -1.2
617,249 - Ga0059261_0587 0.70 -0.0

Or see this region's nucleotide sequence