Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0579

Experiment: syringaldehyde 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0578 and Ga0059261_0579 overlap by 4 nucleotidesGa0059261_0579 and Ga0059261_0580 are separated by 73 nucleotides Ga0059261_0578: Ga0059261_0578 - Major Facilitator Superfamily, at 604,592 to 605,818 _0578 Ga0059261_0579: Ga0059261_0579 - Neutral trehalase, at 605,815 to 607,302 _0579 Ga0059261_0580: Ga0059261_0580 - hypothetical protein, at 607,376 to 608,521 _0580 Position (kb) 605 606 607 608Strain fitness (log2 ratio) -2 -1 0 1 2at 604.934 kb on + strand, within Ga0059261_0578at 604.934 kb on + strand, within Ga0059261_0578at 604.934 kb on + strand, within Ga0059261_0578at 604.934 kb on + strand, within Ga0059261_0578at 604.935 kb on - strand, within Ga0059261_0578at 604.935 kb on - strand, within Ga0059261_0578at 604.935 kb on - strand, within Ga0059261_0578at 604.935 kb on - strand, within Ga0059261_0578at 605.090 kb on + strand, within Ga0059261_0578at 605.091 kb on - strand, within Ga0059261_0578at 605.091 kb on - strand, within Ga0059261_0578at 605.130 kb on + strand, within Ga0059261_0578at 605.140 kb on + strand, within Ga0059261_0578at 605.140 kb on + strand, within Ga0059261_0578at 605.261 kb on + strand, within Ga0059261_0578at 605.261 kb on + strand, within Ga0059261_0578at 605.262 kb on - strand, within Ga0059261_0578at 605.262 kb on - strand, within Ga0059261_0578at 605.262 kb on - strand, within Ga0059261_0578at 605.262 kb on - strand, within Ga0059261_0578at 605.262 kb on - strand, within Ga0059261_0578at 605.283 kb on + strand, within Ga0059261_0578at 605.283 kb on + strand, within Ga0059261_0578at 605.284 kb on - strand, within Ga0059261_0578at 605.406 kb on + strand, within Ga0059261_0578at 605.406 kb on + strand, within Ga0059261_0578at 605.407 kb on - strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.543 kb on + strand, within Ga0059261_0578at 605.544 kb on - strand, within Ga0059261_0578at 605.544 kb on - strand, within Ga0059261_0578at 605.544 kb on - strand, within Ga0059261_0578at 605.583 kb on - strand, within Ga0059261_0578at 605.583 kb on - strand, within Ga0059261_0578at 605.738 kb on + strandat 605.738 kb on + strandat 605.739 kb on - strandat 605.739 kb on - strandat 605.981 kb on + strand, within Ga0059261_0579at 605.982 kb on - strand, within Ga0059261_0579at 605.982 kb on - strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.063 kb on + strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.064 kb on - strand, within Ga0059261_0579at 606.152 kb on + strand, within Ga0059261_0579at 606.178 kb on + strand, within Ga0059261_0579at 606.178 kb on + strand, within Ga0059261_0579at 606.178 kb on + strand, within Ga0059261_0579at 606.178 kb on + strand, within Ga0059261_0579at 606.181 kb on + strand, within Ga0059261_0579at 606.182 kb on - strand, within Ga0059261_0579at 606.182 kb on - strand, within Ga0059261_0579at 606.193 kb on + strand, within Ga0059261_0579at 606.193 kb on + strand, within Ga0059261_0579at 606.193 kb on + strand, within Ga0059261_0579at 606.194 kb on - strand, within Ga0059261_0579at 606.194 kb on - strand, within Ga0059261_0579at 606.194 kb on - strand, within Ga0059261_0579at 606.194 kb on - strand, within Ga0059261_0579at 606.246 kb on + strand, within Ga0059261_0579at 606.247 kb on - strand, within Ga0059261_0579at 606.247 kb on - strand, within Ga0059261_0579at 606.247 kb on - strand, within Ga0059261_0579at 606.310 kb on + strand, within Ga0059261_0579at 606.310 kb on + strand, within Ga0059261_0579at 606.310 kb on + strand, within Ga0059261_0579at 606.310 kb on + strand, within Ga0059261_0579at 606.310 kb on + strand, within Ga0059261_0579at 606.311 kb on - strand, within Ga0059261_0579at 606.311 kb on - strand, within Ga0059261_0579at 606.311 kb on - strand, within Ga0059261_0579at 606.313 kb on + strand, within Ga0059261_0579at 606.313 kb on + strand, within Ga0059261_0579at 606.313 kb on + strand, within Ga0059261_0579at 606.343 kb on + strand, within Ga0059261_0579at 606.343 kb on + strand, within Ga0059261_0579at 606.343 kb on + strand, within Ga0059261_0579at 606.344 kb on - strand, within Ga0059261_0579at 606.511 kb on + strand, within Ga0059261_0579at 606.511 kb on + strand, within Ga0059261_0579at 606.511 kb on + strand, within Ga0059261_0579at 606.511 kb on + strand, within Ga0059261_0579at 606.558 kb on + strandat 606.865 kb on + strand, within Ga0059261_0579at 606.865 kb on + strand, within Ga0059261_0579at 606.865 kb on + strand, within Ga0059261_0579at 606.865 kb on + strand, within Ga0059261_0579at 606.865 kb on + strand, within Ga0059261_0579at 606.866 kb on - strand, within Ga0059261_0579at 606.874 kb on + strand, within Ga0059261_0579at 606.874 kb on + strand, within Ga0059261_0579at 606.874 kb on + strand, within Ga0059261_0579at 606.874 kb on + strand, within Ga0059261_0579at 606.874 kb on + strand, within Ga0059261_0579at 606.874 kb on + strand, within Ga0059261_0579at 606.875 kb on - strand, within Ga0059261_0579at 606.875 kb on - strand, within Ga0059261_0579at 606.875 kb on - strand, within Ga0059261_0579at 607.103 kb on - strandat 607.166 kb on - strandat 607.196 kb on - strandat 607.284 kb on + strandat 607.284 kb on + strandat 607.284 kb on + strandat 607.284 kb on + strandat 607.285 kb on - strandat 607.285 kb on - strandat 607.494 kb on + strand, within Ga0059261_0580at 607.494 kb on + strand, within Ga0059261_0580at 607.495 kb on - strand, within Ga0059261_0580at 607.495 kb on - strand, within Ga0059261_0580at 607.495 kb on - strand, within Ga0059261_0580at 607.594 kb on + strand, within Ga0059261_0580at 607.594 kb on + strand, within Ga0059261_0580at 607.594 kb on + strand, within Ga0059261_0580at 607.594 kb on + strand, within Ga0059261_0580at 607.594 kb on + strand, within Ga0059261_0580at 607.594 kb on + strand, within Ga0059261_0580at 607.594 kb on + strand, within Ga0059261_0580at 607.595 kb on - strand, within Ga0059261_0580at 607.595 kb on - strand, within Ga0059261_0580at 607.595 kb on - strand, within Ga0059261_0580at 607.595 kb on - strand, within Ga0059261_0580at 607.595 kb on - strand, within Ga0059261_0580at 607.695 kb on + strand, within Ga0059261_0580at 607.695 kb on + strand, within Ga0059261_0580at 607.695 kb on + strand, within Ga0059261_0580at 607.695 kb on + strand, within Ga0059261_0580at 607.695 kb on + strand, within Ga0059261_0580at 607.695 kb on + strand, within Ga0059261_0580at 607.696 kb on - strand, within Ga0059261_0580at 607.696 kb on - strand, within Ga0059261_0580at 607.696 kb on - strand, within Ga0059261_0580at 607.696 kb on - strand, within Ga0059261_0580at 607.696 kb on - strand, within Ga0059261_0580at 607.696 kb on - strand, within Ga0059261_0580at 607.696 kb on - strand, within Ga0059261_0580at 607.696 kb on - strand, within Ga0059261_0580at 607.696 kb on - strand, within Ga0059261_0580at 607.696 kb on - strand, within Ga0059261_0580at 607.725 kb on + strand, within Ga0059261_0580at 607.725 kb on + strand, within Ga0059261_0580at 607.726 kb on - strand, within Ga0059261_0580at 607.726 kb on - strand, within Ga0059261_0580at 607.726 kb on - strand, within Ga0059261_0580at 607.761 kb on + strand, within Ga0059261_0580at 607.761 kb on + strand, within Ga0059261_0580at 607.761 kb on + strand, within Ga0059261_0580at 607.761 kb on + strand, within Ga0059261_0580at 607.762 kb on - strand, within Ga0059261_0580at 607.762 kb on - strand, within Ga0059261_0580at 607.762 kb on - strand, within Ga0059261_0580at 607.762 kb on - strand, within Ga0059261_0580at 607.762 kb on - strand, within Ga0059261_0580at 607.762 kb on - strandat 607.782 kb on + strand, within Ga0059261_0580at 607.782 kb on + strand, within Ga0059261_0580at 607.782 kb on + strand, within Ga0059261_0580at 607.782 kb on + strand, within Ga0059261_0580at 607.782 kb on + strand, within Ga0059261_0580at 607.782 kb on + strand, within Ga0059261_0580at 607.782 kb on + strand, within Ga0059261_0580at 607.782 kb on + strand, within Ga0059261_0580at 607.782 kb on + strand, within Ga0059261_0580at 607.783 kb on - strand, within Ga0059261_0580at 607.783 kb on - strand, within Ga0059261_0580at 607.783 kb on - strand, within Ga0059261_0580at 607.809 kb on + strand, within Ga0059261_0580at 607.896 kb on + strand, within Ga0059261_0580at 607.896 kb on + strand, within Ga0059261_0580at 607.897 kb on - strand, within Ga0059261_0580at 607.897 kb on - strand, within Ga0059261_0580at 607.944 kb on + strand, within Ga0059261_0580at 607.944 kb on + strand, within Ga0059261_0580at 607.944 kb on + strand, within Ga0059261_0580at 607.945 kb on - strand, within Ga0059261_0580at 607.945 kb on - strand, within Ga0059261_0580at 607.981 kb on + strand, within Ga0059261_0580at 608.119 kb on + strand, within Ga0059261_0580at 608.120 kb on - strand, within Ga0059261_0580at 608.121 kb on + strand, within Ga0059261_0580at 608.121 kb on + strand, within Ga0059261_0580at 608.121 kb on + strand, within Ga0059261_0580at 608.121 kb on + strand, within Ga0059261_0580at 608.121 kb on + strand, within Ga0059261_0580at 608.122 kb on - strand, within Ga0059261_0580at 608.122 kb on - strand, within Ga0059261_0580at 608.122 kb on - strand, within Ga0059261_0580at 608.146 kb on - strandat 608.146 kb on - strand, within Ga0059261_0580at 608.146 kb on - strandat 608.146 kb on - strand, within Ga0059261_0580at 608.223 kb on + strand, within Ga0059261_0580at 608.223 kb on + strand, within Ga0059261_0580at 608.224 kb on - strand, within Ga0059261_0580at 608.245 kb on - strand, within Ga0059261_0580at 608.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 0.5 mM
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604,934 + Ga0059261_0578 0.28 +0.3
604,934 + Ga0059261_0578 0.28 -0.6
604,934 + Ga0059261_0578 0.28 -0.3
604,934 + Ga0059261_0578 0.28 +0.2
604,935 - Ga0059261_0578 0.28 -0.5
604,935 - Ga0059261_0578 0.28 +0.2
604,935 - Ga0059261_0578 0.28 +0.2
604,935 - Ga0059261_0578 0.28 +0.1
605,090 + Ga0059261_0578 0.41 -0.8
605,091 - Ga0059261_0578 0.41 +0.6
605,091 - Ga0059261_0578 0.41 -0.3
605,130 + Ga0059261_0578 0.44 -0.4
605,140 + Ga0059261_0578 0.45 -0.6
605,140 + Ga0059261_0578 0.45 -0.9
605,261 + Ga0059261_0578 0.55 +1.7
605,261 + Ga0059261_0578 0.55 +0.2
605,262 - Ga0059261_0578 0.55 -0.0
605,262 - Ga0059261_0578 0.55 -0.4
605,262 - Ga0059261_0578 0.55 +0.1
605,262 - Ga0059261_0578 0.55 +0.6
605,262 - Ga0059261_0578 0.55 +0.0
605,283 + Ga0059261_0578 0.56 +0.5
605,283 + Ga0059261_0578 0.56 -0.5
605,284 - Ga0059261_0578 0.56 -0.2
605,406 + Ga0059261_0578 0.66 -0.5
605,406 + Ga0059261_0578 0.66 -1.2
605,407 - Ga0059261_0578 0.66 -0.2
605,543 + Ga0059261_0578 0.78 +0.1
605,543 + Ga0059261_0578 0.78 +0.7
605,543 + Ga0059261_0578 0.78 -0.3
605,543 + Ga0059261_0578 0.78 +0.3
605,543 + Ga0059261_0578 0.78 -0.4
605,543 + Ga0059261_0578 0.78 +0.1
605,544 - Ga0059261_0578 0.78 -1.2
605,544 - Ga0059261_0578 0.78 +0.2
605,544 - Ga0059261_0578 0.78 +0.7
605,583 - Ga0059261_0578 0.81 +0.9
605,583 - Ga0059261_0578 0.81 +0.0
605,738 + -1.2
605,738 + +0.7
605,739 - -0.3
605,739 - -0.3
605,981 + Ga0059261_0579 0.11 +1.8
605,982 - Ga0059261_0579 0.11 +0.5
605,982 - Ga0059261_0579 0.11 -0.2
606,063 + Ga0059261_0579 0.17 +0.7
606,063 + Ga0059261_0579 0.17 +0.6
606,063 + Ga0059261_0579 0.17 +1.8
606,063 + Ga0059261_0579 0.17 +1.2
606,063 + Ga0059261_0579 0.17 +0.3
606,063 + Ga0059261_0579 0.17 -0.2
606,064 - Ga0059261_0579 0.17 +0.2
606,064 - Ga0059261_0579 0.17 +0.2
606,064 - Ga0059261_0579 0.17 +0.2
606,064 - Ga0059261_0579 0.17 -0.8
606,064 - Ga0059261_0579 0.17 +2.4
606,064 - Ga0059261_0579 0.17 -0.1
606,152 + Ga0059261_0579 0.23 -0.0
606,178 + Ga0059261_0579 0.24 -0.0
606,178 + Ga0059261_0579 0.24 +0.7
606,178 + Ga0059261_0579 0.24 +0.6
606,178 + Ga0059261_0579 0.24 -0.9
606,181 + Ga0059261_0579 0.25 -0.3
606,182 - Ga0059261_0579 0.25 +0.4
606,182 - Ga0059261_0579 0.25 +0.2
606,193 + Ga0059261_0579 0.25 +0.2
606,193 + Ga0059261_0579 0.25 +0.2
606,193 + Ga0059261_0579 0.25 -1.2
606,194 - Ga0059261_0579 0.25 +0.6
606,194 - Ga0059261_0579 0.25 -0.7
606,194 - Ga0059261_0579 0.25 +0.3
606,194 - Ga0059261_0579 0.25 +0.4
606,246 + Ga0059261_0579 0.29 +0.7
606,247 - Ga0059261_0579 0.29 +0.8
606,247 - Ga0059261_0579 0.29 +1.1
606,247 - Ga0059261_0579 0.29 +0.1
606,310 + Ga0059261_0579 0.33 +0.1
606,310 + Ga0059261_0579 0.33 +0.3
606,310 + Ga0059261_0579 0.33 -0.1
606,310 + Ga0059261_0579 0.33 -0.2
606,310 + Ga0059261_0579 0.33 +0.2
606,311 - Ga0059261_0579 0.33 +0.8
606,311 - Ga0059261_0579 0.33 +0.3
606,311 - Ga0059261_0579 0.33 -2.2
606,313 + Ga0059261_0579 0.33 -0.5
606,313 + Ga0059261_0579 0.33 -0.1
606,313 + Ga0059261_0579 0.33 -1.0
606,343 + Ga0059261_0579 0.35 +0.1
606,343 + Ga0059261_0579 0.35 -0.3
606,343 + Ga0059261_0579 0.35 +0.3
606,344 - Ga0059261_0579 0.36 +0.1
606,511 + Ga0059261_0579 0.47 +0.1
606,511 + Ga0059261_0579 0.47 +0.2
606,511 + Ga0059261_0579 0.47 +0.2
606,511 + Ga0059261_0579 0.47 +0.4
606,558 + +1.8
606,865 + Ga0059261_0579 0.71 -0.9
606,865 + Ga0059261_0579 0.71 +0.8
606,865 + Ga0059261_0579 0.71 +0.5
606,865 + Ga0059261_0579 0.71 -0.9
606,865 + Ga0059261_0579 0.71 +0.4
606,866 - Ga0059261_0579 0.71 +0.5
606,874 + Ga0059261_0579 0.71 -0.4
606,874 + Ga0059261_0579 0.71 -0.8
606,874 + Ga0059261_0579 0.71 +0.0
606,874 + Ga0059261_0579 0.71 +0.4
606,874 + Ga0059261_0579 0.71 +0.1
606,874 + Ga0059261_0579 0.71 +0.7
606,875 - Ga0059261_0579 0.71 +1.1
606,875 - Ga0059261_0579 0.71 +0.4
606,875 - Ga0059261_0579 0.71 -0.5
607,103 - +1.4
607,166 - -1.3
607,196 - +0.0
607,284 + -1.2
607,284 + +0.1
607,284 + +0.2
607,284 + -1.2
607,285 - +1.3
607,285 - -0.7
607,494 + Ga0059261_0580 0.10 -0.2
607,494 + Ga0059261_0580 0.10 +0.5
607,495 - Ga0059261_0580 0.10 +1.0
607,495 - Ga0059261_0580 0.10 -0.2
607,495 - Ga0059261_0580 0.10 -1.5
607,594 + Ga0059261_0580 0.19 +0.1
607,594 + Ga0059261_0580 0.19 -0.7
607,594 + Ga0059261_0580 0.19 +0.1
607,594 + Ga0059261_0580 0.19 -0.4
607,594 + Ga0059261_0580 0.19 +0.8
607,594 + Ga0059261_0580 0.19 -0.0
607,594 + Ga0059261_0580 0.19 +0.2
607,595 - Ga0059261_0580 0.19 -0.5
607,595 - Ga0059261_0580 0.19 +0.1
607,595 - Ga0059261_0580 0.19 +0.1
607,595 - Ga0059261_0580 0.19 -0.4
607,595 - Ga0059261_0580 0.19 +0.4
607,695 + Ga0059261_0580 0.28 +0.3
607,695 + Ga0059261_0580 0.28 -1.6
607,695 + Ga0059261_0580 0.28 +1.1
607,695 + Ga0059261_0580 0.28 -0.7
607,695 + Ga0059261_0580 0.28 +0.6
607,695 + Ga0059261_0580 0.28 -0.2
607,696 - Ga0059261_0580 0.28 +0.8
607,696 - Ga0059261_0580 0.28 +0.4
607,696 - Ga0059261_0580 0.28 +0.6
607,696 - Ga0059261_0580 0.28 -0.4
607,696 - Ga0059261_0580 0.28 -0.5
607,696 - Ga0059261_0580 0.28 +0.6
607,696 - Ga0059261_0580 0.28 -0.0
607,696 - Ga0059261_0580 0.28 +0.0
607,696 - Ga0059261_0580 0.28 -0.6
607,696 - Ga0059261_0580 0.28 -0.4
607,725 + Ga0059261_0580 0.30 +0.2
607,725 + Ga0059261_0580 0.30 -0.4
607,726 - Ga0059261_0580 0.31 -0.1
607,726 - Ga0059261_0580 0.31 +0.6
607,726 - Ga0059261_0580 0.31 +0.1
607,761 + Ga0059261_0580 0.34 +0.1
607,761 + Ga0059261_0580 0.34 +0.4
607,761 + Ga0059261_0580 0.34 -0.4
607,761 + Ga0059261_0580 0.34 -0.4
607,762 - Ga0059261_0580 0.34 -0.6
607,762 - Ga0059261_0580 0.34 -0.2
607,762 - Ga0059261_0580 0.34 +0.5
607,762 - Ga0059261_0580 0.34 +0.0
607,762 - Ga0059261_0580 0.34 +0.5
607,762 - -0.2
607,782 + Ga0059261_0580 0.35 -0.5
607,782 + Ga0059261_0580 0.35 -0.5
607,782 + Ga0059261_0580 0.35 +0.1
607,782 + Ga0059261_0580 0.35 +0.2
607,782 + Ga0059261_0580 0.35 +0.8
607,782 + Ga0059261_0580 0.35 +0.4
607,782 + Ga0059261_0580 0.35 -0.5
607,782 + Ga0059261_0580 0.35 -0.3
607,782 + Ga0059261_0580 0.35 +0.1
607,783 - Ga0059261_0580 0.36 +0.4
607,783 - Ga0059261_0580 0.36 +0.4
607,783 - Ga0059261_0580 0.36 -0.6
607,809 + Ga0059261_0580 0.38 +0.8
607,896 + Ga0059261_0580 0.45 -0.2
607,896 + Ga0059261_0580 0.45 +0.4
607,897 - Ga0059261_0580 0.45 -0.1
607,897 - Ga0059261_0580 0.45 -0.3
607,944 + Ga0059261_0580 0.50 -0.7
607,944 + Ga0059261_0580 0.50 +0.0
607,944 + Ga0059261_0580 0.50 -0.2
607,945 - Ga0059261_0580 0.50 -0.6
607,945 - Ga0059261_0580 0.50 -1.1
607,981 + Ga0059261_0580 0.53 +1.2
608,119 + Ga0059261_0580 0.65 +0.1
608,120 - Ga0059261_0580 0.65 -0.6
608,121 + Ga0059261_0580 0.65 +1.5
608,121 + Ga0059261_0580 0.65 +0.1
608,121 + Ga0059261_0580 0.65 -0.7
608,121 + Ga0059261_0580 0.65 +0.2
608,121 + Ga0059261_0580 0.65 -0.3
608,122 - Ga0059261_0580 0.65 +0.8
608,122 - Ga0059261_0580 0.65 +0.7
608,122 - Ga0059261_0580 0.65 -0.3
608,146 - -0.7
608,146 - Ga0059261_0580 0.67 -0.5
608,146 - +0.8
608,146 - Ga0059261_0580 0.67 +0.3
608,223 + Ga0059261_0580 0.74 +0.1
608,223 + Ga0059261_0580 0.74 -0.9
608,224 - Ga0059261_0580 0.74 +0.1
608,245 - Ga0059261_0580 0.76 -0.6
608,245 - -1.2

Or see this region's nucleotide sequence