Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0034

Experiment: syringaldehyde 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0031 and Ga0059261_0032 are separated by 13 nucleotidesGa0059261_0032 and Ga0059261_0033 overlap by 4 nucleotidesGa0059261_0033 and Ga0059261_0034 are separated by 73 nucleotidesGa0059261_0034 and Ga0059261_0035 overlap by 58 nucleotidesGa0059261_0035 and Ga0059261_0036 are separated by 129 nucleotides Ga0059261_0031: Ga0059261_0031 - Lactoylglutathione lyase and related lyases, at 26,691 to 27,080 _0031 Ga0059261_0032: Ga0059261_0032 - Protein of unknown function, DUF488, at 27,094 to 27,525 _0032 Ga0059261_0033: Ga0059261_0033 - transcriptional regulator, AsnC family, at 27,522 to 27,974 _0033 Ga0059261_0034: Ga0059261_0034 - Putative threonine efflux protein, at 28,048 to 28,698 _0034 Ga0059261_0035: Ga0059261_0035 - Uncharacterized protein conserved in bacteria, at 28,641 to 28,985 _0035 Ga0059261_0036: Ga0059261_0036 - DNA gyrase, A subunit, at 29,115 to 31,856 _0036 Position (kb) 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 27.068 kb on + strandat 27.115 kb on + strandat 27.115 kb on + strandat 27.115 kb on + strandat 27.115 kb on + strandat 27.115 kb on + strandat 27.116 kb on - strandat 27.116 kb on - strandat 27.116 kb on - strandat 27.265 kb on + strand, within Ga0059261_0032at 27.266 kb on - strand, within Ga0059261_0032at 27.289 kb on - strand, within Ga0059261_0032at 27.349 kb on + strand, within Ga0059261_0032at 27.349 kb on + strand, within Ga0059261_0032at 27.350 kb on - strand, within Ga0059261_0032at 27.350 kb on - strand, within Ga0059261_0032at 27.523 kb on + strandat 27.524 kb on - strandat 27.559 kb on + strandat 27.559 kb on + strandat 27.559 kb on + strandat 27.559 kb on + strandat 27.560 kb on - strandat 27.619 kb on + strand, within Ga0059261_0033at 27.619 kb on + strand, within Ga0059261_0033at 27.619 kb on + strand, within Ga0059261_0033at 27.620 kb on - strandat 27.620 kb on - strand, within Ga0059261_0033at 27.620 kb on - strand, within Ga0059261_0033at 27.655 kb on + strand, within Ga0059261_0033at 27.655 kb on + strand, within Ga0059261_0033at 27.655 kb on + strandat 27.655 kb on + strand, within Ga0059261_0033at 27.767 kb on + strand, within Ga0059261_0033at 27.767 kb on + strandat 27.767 kb on + strand, within Ga0059261_0033at 27.768 kb on - strand, within Ga0059261_0033at 27.769 kb on + strand, within Ga0059261_0033at 27.769 kb on + strand, within Ga0059261_0033at 27.769 kb on + strand, within Ga0059261_0033at 27.769 kb on + strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.943 kb on - strandat 27.943 kb on - strandat 27.948 kb on - strandat 28.205 kb on + strand, within Ga0059261_0034at 28.206 kb on - strand, within Ga0059261_0034at 28.206 kb on - strand, within Ga0059261_0034at 28.206 kb on - strand, within Ga0059261_0034at 28.206 kb on - strand, within Ga0059261_0034at 28.294 kb on + strand, within Ga0059261_0034at 28.294 kb on + strand, within Ga0059261_0034at 28.295 kb on - strand, within Ga0059261_0034at 28.303 kb on + strand, within Ga0059261_0034at 28.303 kb on + strand, within Ga0059261_0034at 28.304 kb on - strand, within Ga0059261_0034at 28.444 kb on + strand, within Ga0059261_0034at 28.444 kb on + strand, within Ga0059261_0034at 28.444 kb on + strand, within Ga0059261_0034at 28.444 kb on + strand, within Ga0059261_0034at 28.445 kb on - strand, within Ga0059261_0034at 28.445 kb on - strand, within Ga0059261_0034at 28.445 kb on - strand, within Ga0059261_0034at 28.445 kb on - strand, within Ga0059261_0034at 28.445 kb on - strand, within Ga0059261_0034at 28.627 kb on + strand, within Ga0059261_0034at 28.696 kb on + strandat 28.697 kb on - strandat 28.697 kb on - strandat 28.773 kb on + strandat 28.774 kb on - strand, within Ga0059261_0035at 28.885 kb on + strandat 28.885 kb on + strand, within Ga0059261_0035at 28.886 kb on - strand, within Ga0059261_0035at 28.886 kb on - strand, within Ga0059261_0035at 28.886 kb on - strand, within Ga0059261_0035at 28.966 kb on + strandat 28.966 kb on + strandat 28.966 kb on + strandat 28.966 kb on + strandat 28.976 kb on + strandat 28.976 kb on + strandat 28.977 kb on - strandat 28.977 kb on - strandat 29.116 kb on + strandat 29.116 kb on + strandat 29.116 kb on + strandat 29.117 kb on - strandat 29.117 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 0.5 mM
remove
27,068 + +0.4
27,115 + -0.2
27,115 + +0.8
27,115 + -0.0
27,115 + -0.3
27,115 + -1.0
27,116 - +0.4
27,116 - +0.3
27,116 - -0.5
27,265 + Ga0059261_0032 0.40 +0.6
27,266 - Ga0059261_0032 0.40 -0.1
27,289 - Ga0059261_0032 0.45 +0.2
27,349 + Ga0059261_0032 0.59 +0.7
27,349 + Ga0059261_0032 0.59 -0.1
27,350 - Ga0059261_0032 0.59 +0.1
27,350 - Ga0059261_0032 0.59 +0.8
27,523 + +0.1
27,524 - +0.7
27,559 + +0.1
27,559 + +0.8
27,559 + -0.0
27,559 + -0.6
27,560 - -0.8
27,619 + Ga0059261_0033 0.21 -1.2
27,619 + Ga0059261_0033 0.21 -0.1
27,619 + Ga0059261_0033 0.21 -0.4
27,620 - +1.8
27,620 - Ga0059261_0033 0.22 -0.2
27,620 - Ga0059261_0033 0.22 +0.2
27,655 + Ga0059261_0033 0.29 +0.1
27,655 + Ga0059261_0033 0.29 -0.4
27,655 + -0.5
27,655 + Ga0059261_0033 0.29 +0.5
27,767 + Ga0059261_0033 0.54 +0.5
27,767 + +0.2
27,767 + Ga0059261_0033 0.54 +0.3
27,768 - Ga0059261_0033 0.54 -0.4
27,769 + Ga0059261_0033 0.55 +1.3
27,769 + Ga0059261_0033 0.55 +1.4
27,769 + Ga0059261_0033 0.55 +0.6
27,769 + Ga0059261_0033 0.55 +1.4
27,770 - Ga0059261_0033 0.55 +0.4
27,770 - Ga0059261_0033 0.55 +0.1
27,770 - Ga0059261_0033 0.55 -0.4
27,770 - Ga0059261_0033 0.55 +0.4
27,770 - Ga0059261_0033 0.55 -0.2
27,770 - Ga0059261_0033 0.55 +0.7
27,770 - Ga0059261_0033 0.55 -1.0
27,770 - Ga0059261_0033 0.55 -0.3
27,943 - +1.8
27,943 - +0.4
27,948 - +3.0
28,205 + Ga0059261_0034 0.24 +0.1
28,206 - Ga0059261_0034 0.24 +0.0
28,206 - Ga0059261_0034 0.24 -0.1
28,206 - Ga0059261_0034 0.24 +1.0
28,206 - Ga0059261_0034 0.24 -0.3
28,294 + Ga0059261_0034 0.38 +0.6
28,294 + Ga0059261_0034 0.38 +0.7
28,295 - Ga0059261_0034 0.38 -1.0
28,303 + Ga0059261_0034 0.39 +0.8
28,303 + Ga0059261_0034 0.39 +0.5
28,304 - Ga0059261_0034 0.39 -0.1
28,444 + Ga0059261_0034 0.61 +0.8
28,444 + Ga0059261_0034 0.61 +0.1
28,444 + Ga0059261_0034 0.61 +0.3
28,444 + Ga0059261_0034 0.61 -1.0
28,445 - Ga0059261_0034 0.61 +0.0
28,445 - Ga0059261_0034 0.61 -0.7
28,445 - Ga0059261_0034 0.61 +0.2
28,445 - Ga0059261_0034 0.61 +0.7
28,445 - Ga0059261_0034 0.61 -0.0
28,627 + Ga0059261_0034 0.89 +0.6
28,696 + +0.0
28,697 - -0.5
28,697 - +1.1
28,773 + -0.8
28,774 - Ga0059261_0035 0.39 -0.3
28,885 + -0.5
28,885 + Ga0059261_0035 0.71 +0.1
28,886 - Ga0059261_0035 0.71 -0.6
28,886 - Ga0059261_0035 0.71 -0.0
28,886 - Ga0059261_0035 0.71 +2.0
28,966 + -0.3
28,966 + -2.8
28,966 + -0.2
28,966 + +0.1
28,976 + +0.2
28,976 + -1.5
28,977 - -0.8
28,977 - +1.1
29,116 + +0.6
29,116 + +0.6
29,116 + -0.1
29,117 - -0.1
29,117 - -0.0

Or see this region's nucleotide sequence