Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03968

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02525 and CCNA_03968 overlap by 4 nucleotidesCCNA_03968 and CCNA_02526 overlap by 4 nucleotides CCNA_02525: CCNA_02525 - aspartate carbamoyltransferase, at 2,673,609 to 2,674,607 _02525 CCNA_03968: CCNA_03968 - hypothetical protein, at 2,674,604 to 2,674,744 _03968 CCNA_02526: CCNA_02526 - dihydroorotase, at 2,674,741 to 2,676,042 _02526 Position (kb) 2674 2675Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2673.644 kb on + strandat 2673.717 kb on + strand, within CCNA_02525at 2673.723 kb on - strand, within CCNA_02525at 2673.725 kb on - strand, within CCNA_02525at 2673.767 kb on - strand, within CCNA_02525at 2673.767 kb on - strand, within CCNA_02525at 2673.782 kb on - strand, within CCNA_02525at 2673.818 kb on + strand, within CCNA_02525at 2673.844 kb on + strand, within CCNA_02525at 2673.873 kb on + strand, within CCNA_02525at 2673.881 kb on - strand, within CCNA_02525at 2673.896 kb on + strand, within CCNA_02525at 2673.902 kb on + strand, within CCNA_02525at 2673.902 kb on + strand, within CCNA_02525at 2673.902 kb on + strand, within CCNA_02525at 2673.902 kb on + strand, within CCNA_02525at 2673.902 kb on + strand, within CCNA_02525at 2673.902 kb on + strand, within CCNA_02525at 2673.902 kb on + strand, within CCNA_02525at 2673.902 kb on + strand, within CCNA_02525at 2673.902 kb on + strand, within CCNA_02525at 2673.910 kb on - strand, within CCNA_02525at 2673.926 kb on + strand, within CCNA_02525at 2673.927 kb on + strand, within CCNA_02525at 2673.934 kb on - strand, within CCNA_02525at 2673.936 kb on - strand, within CCNA_02525at 2673.970 kb on + strand, within CCNA_02525at 2673.985 kb on - strand, within CCNA_02525at 2674.024 kb on + strand, within CCNA_02525at 2674.034 kb on + strand, within CCNA_02525at 2674.080 kb on + strand, within CCNA_02525at 2674.080 kb on + strand, within CCNA_02525at 2674.088 kb on - strand, within CCNA_02525at 2674.091 kb on + strand, within CCNA_02525at 2674.137 kb on - strand, within CCNA_02525at 2674.169 kb on - strand, within CCNA_02525at 2674.169 kb on - strand, within CCNA_02525at 2674.207 kb on + strand, within CCNA_02525at 2674.207 kb on + strand, within CCNA_02525at 2674.207 kb on + strand, within CCNA_02525at 2674.207 kb on + strand, within CCNA_02525at 2674.215 kb on - strand, within CCNA_02525at 2674.215 kb on - strand, within CCNA_02525at 2674.215 kb on - strand, within CCNA_02525at 2674.215 kb on - strand, within CCNA_02525at 2674.215 kb on - strand, within CCNA_02525at 2674.251 kb on - strand, within CCNA_02525at 2674.251 kb on - strand, within CCNA_02525at 2674.278 kb on + strand, within CCNA_02525at 2674.302 kb on + strand, within CCNA_02525at 2674.302 kb on + strand, within CCNA_02525at 2674.307 kb on + strand, within CCNA_02525at 2674.310 kb on - strand, within CCNA_02525at 2674.320 kb on - strand, within CCNA_02525at 2674.341 kb on + strand, within CCNA_02525at 2674.410 kb on - strand, within CCNA_02525at 2674.509 kb on + strandat 2674.510 kb on + strandat 2674.534 kb on - strandat 2674.555 kb on + strandat 2674.589 kb on + strandat 2674.599 kb on + strandat 2674.611 kb on + strandat 2674.646 kb on + strand, within CCNA_03968at 2674.646 kb on + strand, within CCNA_03968at 2674.654 kb on - strand, within CCNA_03968at 2674.654 kb on - strand, within CCNA_03968at 2674.666 kb on - strand, within CCNA_03968at 2674.720 kb on - strand, within CCNA_03968at 2674.724 kb on - strand, within CCNA_03968at 2674.726 kb on + strand, within CCNA_03968at 2674.731 kb on + strandat 2674.731 kb on + strandat 2674.734 kb on - strandat 2674.748 kb on + strandat 2674.748 kb on + strandat 2674.865 kb on + strandat 2674.878 kb on + strand, within CCNA_02526at 2674.878 kb on + strand, within CCNA_02526at 2674.878 kb on + strand, within CCNA_02526at 2674.878 kb on + strand, within CCNA_02526at 2674.878 kb on + strand, within CCNA_02526at 2674.878 kb on + strand, within CCNA_02526at 2674.878 kb on + strand, within CCNA_02526at 2674.878 kb on + strand, within CCNA_02526at 2674.878 kb on + strandat 2674.878 kb on + strand, within CCNA_02526at 2674.878 kb on + strand, within CCNA_02526at 2674.878 kb on + strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.886 kb on - strand, within CCNA_02526at 2674.915 kb on - strand, within CCNA_02526at 2674.922 kb on + strand, within CCNA_02526at 2675.020 kb on + strand, within CCNA_02526at 2675.040 kb on + strand, within CCNA_02526at 2675.040 kb on + strand, within CCNA_02526at 2675.048 kb on - strand, within CCNA_02526at 2675.081 kb on + strand, within CCNA_02526at 2675.081 kb on + strand, within CCNA_02526at 2675.089 kb on - strand, within CCNA_02526at 2675.142 kb on + strand, within CCNA_02526at 2675.142 kb on + strand, within CCNA_02526at 2675.143 kb on + strand, within CCNA_02526at 2675.187 kb on - strand, within CCNA_02526at 2675.240 kb on + strand, within CCNA_02526at 2675.245 kb on + strand, within CCNA_02526at 2675.265 kb on - strand, within CCNA_02526at 2675.270 kb on - strand, within CCNA_02526at 2675.274 kb on + strand, within CCNA_02526at 2675.275 kb on + strand, within CCNA_02526at 2675.275 kb on - strand, within CCNA_02526at 2675.283 kb on - strand, within CCNA_02526at 2675.304 kb on + strand, within CCNA_02526at 2675.320 kb on + strand, within CCNA_02526at 2675.345 kb on - strand, within CCNA_02526at 2675.371 kb on + strand, within CCNA_02526at 2675.401 kb on + strand, within CCNA_02526at 2675.424 kb on + strand, within CCNA_02526at 2675.455 kb on + strand, within CCNA_02526at 2675.485 kb on + strand, within CCNA_02526at 2675.485 kb on + strand, within CCNA_02526at 2675.502 kb on + strand, within CCNA_02526at 2675.502 kb on + strand, within CCNA_02526at 2675.502 kb on + strand, within CCNA_02526at 2675.502 kb on + strand, within CCNA_02526at 2675.503 kb on + strand, within CCNA_02526at 2675.510 kb on - strand, within CCNA_02526at 2675.510 kb on - strand, within CCNA_02526at 2675.510 kb on - strand, within CCNA_02526at 2675.533 kb on - strand, within CCNA_02526at 2675.582 kb on + strand, within CCNA_02526at 2675.592 kb on + strand, within CCNA_02526at 2675.634 kb on + strand, within CCNA_02526at 2675.636 kb on - strand, within CCNA_02526at 2675.642 kb on - strand, within CCNA_02526at 2675.642 kb on - strand, within CCNA_02526at 2675.654 kb on - strand, within CCNA_02526at 2675.661 kb on - strand, within CCNA_02526at 2675.666 kb on - strandat 2675.684 kb on + strand, within CCNA_02526at 2675.692 kb on - strand, within CCNA_02526

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
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2,673,644 + -1.4
2,673,717 + CCNA_02525 0.11 +1.0
2,673,723 - CCNA_02525 0.11 -0.1
2,673,725 - CCNA_02525 0.12 +2.3
2,673,767 - CCNA_02525 0.16 +1.8
2,673,767 - CCNA_02525 0.16 +1.5
2,673,782 - CCNA_02525 0.17 -1.8
2,673,818 + CCNA_02525 0.21 +1.8
2,673,844 + CCNA_02525 0.24 +0.6
2,673,873 + CCNA_02525 0.26 -0.2
2,673,881 - CCNA_02525 0.27 -0.7
2,673,896 + CCNA_02525 0.29 -0.5
2,673,902 + CCNA_02525 0.29 -0.7
2,673,902 + CCNA_02525 0.29 -0.7
2,673,902 + CCNA_02525 0.29 +0.2
2,673,902 + CCNA_02525 0.29 +0.8
2,673,902 + CCNA_02525 0.29 +1.2
2,673,902 + CCNA_02525 0.29 +4.2
2,673,902 + CCNA_02525 0.29 +1.9
2,673,902 + CCNA_02525 0.29 +0.5
2,673,902 + CCNA_02525 0.29 -1.0
2,673,910 - CCNA_02525 0.30 +1.3
2,673,926 + CCNA_02525 0.32 +1.2
2,673,927 + CCNA_02525 0.32 -0.1
2,673,934 - CCNA_02525 0.33 -0.7
2,673,936 - CCNA_02525 0.33 +1.0
2,673,970 + CCNA_02525 0.36 +0.0
2,673,985 - CCNA_02525 0.38 -2.1
2,674,024 + CCNA_02525 0.42 -0.2
2,674,034 + CCNA_02525 0.43 +1.3
2,674,080 + CCNA_02525 0.47 +1.2
2,674,080 + CCNA_02525 0.47 +1.3
2,674,088 - CCNA_02525 0.48 -0.2
2,674,091 + CCNA_02525 0.48 +0.2
2,674,137 - CCNA_02525 0.53 +0.0
2,674,169 - CCNA_02525 0.56 -1.4
2,674,169 - CCNA_02525 0.56 -1.1
2,674,207 + CCNA_02525 0.60 +1.8
2,674,207 + CCNA_02525 0.60 +2.3
2,674,207 + CCNA_02525 0.60 +2.5
2,674,207 + CCNA_02525 0.60 +0.8
2,674,215 - CCNA_02525 0.61 -1.7
2,674,215 - CCNA_02525 0.61 +1.0
2,674,215 - CCNA_02525 0.61 -0.2
2,674,215 - CCNA_02525 0.61 +0.8
2,674,215 - CCNA_02525 0.61 -1.5
2,674,251 - CCNA_02525 0.64 +1.2
2,674,251 - CCNA_02525 0.64 -1.7
2,674,278 + CCNA_02525 0.67 -0.5
2,674,302 + CCNA_02525 0.69 +0.3
2,674,302 + CCNA_02525 0.69 -0.1
2,674,307 + CCNA_02525 0.70 +2.3
2,674,310 - CCNA_02525 0.70 +0.2
2,674,320 - CCNA_02525 0.71 +0.3
2,674,341 + CCNA_02525 0.73 +1.9
2,674,410 - CCNA_02525 0.80 -0.2
2,674,509 + +1.2
2,674,510 + +1.4
2,674,534 - -0.7
2,674,555 + -1.0
2,674,589 + +1.7
2,674,599 + +0.3
2,674,611 + +0.7
2,674,646 + CCNA_03968 0.30 +1.6
2,674,646 + CCNA_03968 0.30 +1.6
2,674,654 - CCNA_03968 0.35 -1.4
2,674,654 - CCNA_03968 0.35 +0.3
2,674,666 - CCNA_03968 0.44 -0.5
2,674,720 - CCNA_03968 0.82 -0.8
2,674,724 - CCNA_03968 0.85 -0.5
2,674,726 + CCNA_03968 0.87 +1.2
2,674,731 + +1.0
2,674,731 + +1.3
2,674,734 - +0.3
2,674,748 + +0.1
2,674,748 + +1.0
2,674,865 + +0.8
2,674,878 + CCNA_02526 0.11 +2.1
2,674,878 + CCNA_02526 0.11 +0.8
2,674,878 + CCNA_02526 0.11 -0.5
2,674,878 + CCNA_02526 0.11 +0.9
2,674,878 + CCNA_02526 0.11 +1.7
2,674,878 + CCNA_02526 0.11 +0.1
2,674,878 + CCNA_02526 0.11 +1.9
2,674,878 + CCNA_02526 0.11 +1.5
2,674,878 + +2.3
2,674,878 + CCNA_02526 0.11 +1.1
2,674,878 + CCNA_02526 0.11 +2.8
2,674,878 + CCNA_02526 0.11 +1.0
2,674,886 - CCNA_02526 0.11 -0.2
2,674,886 - CCNA_02526 0.11 +2.3
2,674,886 - CCNA_02526 0.11 -1.8
2,674,886 - CCNA_02526 0.11 -1.6
2,674,886 - CCNA_02526 0.11 -1.0
2,674,886 - CCNA_02526 0.11 +2.3
2,674,886 - CCNA_02526 0.11 +0.3
2,674,886 - CCNA_02526 0.11 -1.2
2,674,886 - CCNA_02526 0.11 +0.3
2,674,886 - CCNA_02526 0.11 +1.9
2,674,886 - CCNA_02526 0.11 +1.3
2,674,886 - CCNA_02526 0.11 +1.3
2,674,886 - CCNA_02526 0.11 -1.1
2,674,886 - CCNA_02526 0.11 +2.5
2,674,915 - CCNA_02526 0.13 -0.2
2,674,922 + CCNA_02526 0.14 +1.8
2,675,020 + CCNA_02526 0.21 +0.3
2,675,040 + CCNA_02526 0.23 +1.3
2,675,040 + CCNA_02526 0.23 +1.5
2,675,048 - CCNA_02526 0.24 -0.3
2,675,081 + CCNA_02526 0.26 +0.3
2,675,081 + CCNA_02526 0.26 +0.5
2,675,089 - CCNA_02526 0.27 +0.7
2,675,142 + CCNA_02526 0.31 +0.9
2,675,142 + CCNA_02526 0.31 +1.5
2,675,143 + CCNA_02526 0.31 +1.9
2,675,187 - CCNA_02526 0.34 -1.0
2,675,240 + CCNA_02526 0.38 +1.4
2,675,245 + CCNA_02526 0.39 +2.3
2,675,265 - CCNA_02526 0.40 +0.0
2,675,270 - CCNA_02526 0.41 -1.6
2,675,274 + CCNA_02526 0.41 +3.2
2,675,275 + CCNA_02526 0.41 +1.2
2,675,275 - CCNA_02526 0.41 +2.3
2,675,283 - CCNA_02526 0.42 +1.5
2,675,304 + CCNA_02526 0.43 +1.2
2,675,320 + CCNA_02526 0.44 +1.3
2,675,345 - CCNA_02526 0.46 +0.7
2,675,371 + CCNA_02526 0.48 -0.5
2,675,401 + CCNA_02526 0.51 +1.1
2,675,424 + CCNA_02526 0.52 +1.3
2,675,455 + CCNA_02526 0.55 +0.1
2,675,485 + CCNA_02526 0.57 +0.0
2,675,485 + CCNA_02526 0.57 +0.7
2,675,502 + CCNA_02526 0.58 +0.7
2,675,502 + CCNA_02526 0.58 +0.1
2,675,502 + CCNA_02526 0.58 +0.6
2,675,502 + CCNA_02526 0.58 +4.7
2,675,503 + CCNA_02526 0.59 +2.3
2,675,510 - CCNA_02526 0.59 +0.7
2,675,510 - CCNA_02526 0.59 +1.3
2,675,510 - CCNA_02526 0.59 -0.5
2,675,533 - CCNA_02526 0.61 +0.3
2,675,582 + CCNA_02526 0.65 +0.3
2,675,592 + CCNA_02526 0.65 -1.1
2,675,634 + CCNA_02526 0.69 +0.0
2,675,636 - CCNA_02526 0.69 +0.2
2,675,642 - CCNA_02526 0.69 -0.3
2,675,642 - CCNA_02526 0.69 -2.1
2,675,654 - CCNA_02526 0.70 +3.3
2,675,661 - CCNA_02526 0.71 +0.3
2,675,666 - +2.3
2,675,684 + CCNA_02526 0.72 +2.1
2,675,692 - CCNA_02526 0.73 +0.7

Or see this region's nucleotide sequence