Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03377 and CCNA_03378 are separated by 171 nucleotides CCNA_03378 and CCNA_03379 overlap by 4 nucleotides CCNA_03379 and CCNA_03380 overlap by 1 nucleotides CCNA_03380 and CCNA_03381 are separated by 122 nucleotides
CCNA_03377: CCNA_03377 - hypothetical protein, at 3,550,214 to 3,550,669
_03377
CCNA_03378: CCNA_03378 - inositol monophosphatase family protein, at 3,550,841 to 3,551,641
_03378
CCNA_03379: CCNA_03379 - Cro/CI family transcriptional regulator, at 3,551,638 to 3,551,865
_03379
CCNA_03380: CCNA_03380 - hypothetical protein, at 3,551,865 to 3,552,536
_03380
CCNA_03381: CCNA_03381 - glycerophosphoryl diester phosphodiesterase, at 3,552,659 to 3,553,729
_03381
Position (kb)
3551
3552 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3550.642 kb on + strand at 3550.669 kb on - strand at 3550.669 kb on - strand at 3550.669 kb on - strand at 3550.704 kb on - strand at 3550.704 kb on - strand at 3550.827 kb on + strand at 3550.828 kb on + strand at 3551.635 kb on + strand at 3551.636 kb on + strand at 3551.636 kb on + strand at 3551.741 kb on + strand, within CCNA_03379 at 3551.741 kb on + strand, within CCNA_03379 at 3551.749 kb on - strand, within CCNA_03379 at 3551.749 kb on - strand, within CCNA_03379 at 3551.755 kb on - strand, within CCNA_03379 at 3551.807 kb on + strand, within CCNA_03379 at 3551.855 kb on - strand at 3551.903 kb on - strand at 3551.904 kb on - strand at 3551.904 kb on - strand at 3551.910 kb on - strand at 3551.941 kb on + strand, within CCNA_03380 at 3551.941 kb on - strand, within CCNA_03380 at 3551.941 kb on - strand, within CCNA_03380 at 3551.941 kb on - strand, within CCNA_03380 at 3551.971 kb on + strand, within CCNA_03380 at 3551.972 kb on - strand, within CCNA_03380 at 3551.979 kb on - strand, within CCNA_03380 at 3551.979 kb on - strand, within CCNA_03380 at 3551.979 kb on - strand, within CCNA_03380 at 3551.979 kb on - strand, within CCNA_03380 at 3551.979 kb on - strand, within CCNA_03380 at 3551.979 kb on - strand, within CCNA_03380 at 3552.035 kb on + strand at 3552.083 kb on - strand, within CCNA_03380 at 3552.083 kb on - strand, within CCNA_03380 at 3552.099 kb on + strand, within CCNA_03380 at 3552.162 kb on - strand, within CCNA_03380 at 3552.162 kb on - strand, within CCNA_03380 at 3552.210 kb on - strand, within CCNA_03380 at 3552.215 kb on - strand, within CCNA_03380 at 3552.215 kb on - strand, within CCNA_03380 at 3552.259 kb on + strand, within CCNA_03380 at 3552.267 kb on - strand at 3552.272 kb on - strand, within CCNA_03380 at 3552.272 kb on - strand, within CCNA_03380 at 3552.280 kb on + strand, within CCNA_03380 at 3552.324 kb on - strand, within CCNA_03380 at 3552.324 kb on - strand, within CCNA_03380 at 3552.324 kb on - strand, within CCNA_03380 at 3552.324 kb on - strand, within CCNA_03380 at 3552.326 kb on + strand, within CCNA_03380 at 3552.334 kb on - strand, within CCNA_03380 at 3552.338 kb on + strand, within CCNA_03380 at 3552.351 kb on - strand, within CCNA_03380 at 3552.382 kb on + strand, within CCNA_03380 at 3552.383 kb on + strand, within CCNA_03380 at 3552.458 kb on - strand, within CCNA_03380 at 3552.625 kb on - strand at 3552.655 kb on + strand at 3552.663 kb on - strand at 3552.665 kb on + strand at 3552.665 kb on + strand at 3552.665 kb on - strand at 3552.680 kb on + strand at 3552.683 kb on - strand at 3552.688 kb on - strand at 3552.700 kb on + strand at 3552.700 kb on + strand at 3552.708 kb on + strand at 3552.708 kb on - strand at 3552.724 kb on + strand at 3552.727 kb on - strand at 3552.738 kb on + strand at 3552.783 kb on + strand, within CCNA_03381 at 3552.797 kb on + strand, within CCNA_03381 at 3552.805 kb on - strand, within CCNA_03381 at 3552.805 kb on - strand, within CCNA_03381 at 3552.826 kb on - strand, within CCNA_03381 at 3552.844 kb on + strand, within CCNA_03381 at 3552.852 kb on - strand, within CCNA_03381
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 3,550,642 + +1.1 3,550,669 - -1.9 3,550,669 - -1.5 3,550,669 - -0.9 3,550,704 - +0.5 3,550,704 - -0.9 3,550,827 + +1.8 3,550,828 + +1.6 3,551,635 + +0.1 3,551,636 + -0.3 3,551,636 + +2.8 3,551,741 + CCNA_03379 0.45 -1.4 3,551,741 + CCNA_03379 0.45 +0.4 3,551,749 - CCNA_03379 0.49 +3.1 3,551,749 - CCNA_03379 0.49 +3.3 3,551,755 - CCNA_03379 0.51 +3.3 3,551,807 + CCNA_03379 0.74 +2.0 3,551,855 - +3.7 3,551,903 - +2.8 3,551,904 - +2.1 3,551,904 - +0.8 3,551,910 - +1.5 3,551,941 + CCNA_03380 0.11 -0.6 3,551,941 - CCNA_03380 0.11 +2.8 3,551,941 - CCNA_03380 0.11 +2.4 3,551,941 - CCNA_03380 0.11 +1.9 3,551,971 + CCNA_03380 0.16 +1.0 3,551,972 - CCNA_03380 0.16 -0.2 3,551,979 - CCNA_03380 0.17 +1.4 3,551,979 - CCNA_03380 0.17 -1.2 3,551,979 - CCNA_03380 0.17 +0.3 3,551,979 - CCNA_03380 0.17 +0.4 3,551,979 - CCNA_03380 0.17 -1.0 3,551,979 - CCNA_03380 0.17 +0.4 3,552,035 + +1.0 3,552,083 - CCNA_03380 0.32 -0.4 3,552,083 - CCNA_03380 0.32 -0.7 3,552,099 + CCNA_03380 0.35 +1.7 3,552,162 - CCNA_03380 0.44 -1.6 3,552,162 - CCNA_03380 0.44 -0.3 3,552,210 - CCNA_03380 0.51 -0.3 3,552,215 - CCNA_03380 0.52 -0.7 3,552,215 - CCNA_03380 0.52 +1.1 3,552,259 + CCNA_03380 0.59 -1.3 3,552,267 - +3.0 3,552,272 - CCNA_03380 0.61 -1.3 3,552,272 - CCNA_03380 0.61 -1.2 3,552,280 + CCNA_03380 0.62 -1.0 3,552,324 - CCNA_03380 0.68 -0.2 3,552,324 - CCNA_03380 0.68 +0.8 3,552,324 - CCNA_03380 0.68 +2.0 3,552,324 - CCNA_03380 0.68 +0.3 3,552,326 + CCNA_03380 0.69 -0.3 3,552,334 - CCNA_03380 0.70 +1.1 3,552,338 + CCNA_03380 0.70 -0.8 3,552,351 - CCNA_03380 0.72 +2.4 3,552,382 + CCNA_03380 0.77 -1.3 3,552,383 + CCNA_03380 0.77 +1.3 3,552,458 - CCNA_03380 0.88 +1.7 3,552,625 - -1.4 3,552,655 + +0.7 3,552,663 - -0.9 3,552,665 + -1.0 3,552,665 + -0.6 3,552,665 - +0.0 3,552,680 + -1.4 3,552,683 - +1.4 3,552,688 - +1.0 3,552,700 + -0.8 3,552,700 + -0.6 3,552,708 + +2.0 3,552,708 - +0.2 3,552,724 + +1.0 3,552,727 - -0.6 3,552,738 + -0.8 3,552,783 + CCNA_03381 0.12 +2.0 3,552,797 + CCNA_03381 0.13 +2.6 3,552,805 - CCNA_03381 0.14 +1.0 3,552,805 - CCNA_03381 0.14 -2.3 3,552,826 - CCNA_03381 0.16 +0.0 3,552,844 + CCNA_03381 0.17 +1.5 3,552,852 - CCNA_03381 0.18 +0.7
Or see this region's nucleotide sequence