Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02747 and CCNA_02748 are separated by 134 nucleotides CCNA_02748 and CCNA_02749 are separated by 3 nucleotides CCNA_02749 and CCNA_02750 are separated by 44 nucleotides CCNA_02750 and CCNA_02751 overlap by 4 nucleotides
CCNA_02747: CCNA_02747 - ABC transporter substrate-binding protein, at 2,909,315 to 2,910,127
_02747
CCNA_02748: CCNA_02748 - hypothetical protein, at 2,910,262 to 2,910,510
_02748
CCNA_02749: CCNA_02749 - hypothetical protein, at 2,910,514 to 2,910,963
_02749
CCNA_02750: CCNA_02750 - ABC transporter permease protein, at 2,911,008 to 2,911,682
_02750
CCNA_02751: CCNA_02751 - ABC transporter ATP-binding protein, at 2,911,679 to 2,912,677
_02751
Position (kb)
2911
2912 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2910.049 kb on - strand at 2910.059 kb on + strand at 2910.095 kb on + strand at 2910.103 kb on - strand at 2910.103 kb on - strand at 2910.103 kb on - strand at 2910.103 kb on - strand at 2910.103 kb on - strand at 2910.103 kb on - strand at 2910.117 kb on + strand at 2910.117 kb on + strand at 2910.117 kb on + strand at 2910.117 kb on + strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.125 kb on - strand at 2910.161 kb on - strand at 2910.209 kb on + strand at 2910.231 kb on + strand at 2910.233 kb on - strand at 2910.286 kb on + strand at 2910.286 kb on + strand at 2910.291 kb on + strand, within CCNA_02748 at 2910.294 kb on - strand, within CCNA_02748 at 2910.299 kb on - strand, within CCNA_02748 at 2910.309 kb on + strand, within CCNA_02748 at 2910.318 kb on + strand, within CCNA_02748 at 2910.324 kb on - strand, within CCNA_02748 at 2910.324 kb on - strand, within CCNA_02748 at 2910.326 kb on - strand, within CCNA_02748 at 2910.326 kb on - strand, within CCNA_02748 at 2910.326 kb on - strand, within CCNA_02748 at 2910.366 kb on + strand, within CCNA_02748 at 2910.428 kb on + strand, within CCNA_02748 at 2910.428 kb on + strand, within CCNA_02748 at 2910.468 kb on + strand, within CCNA_02748 at 2910.468 kb on + strand, within CCNA_02748 at 2910.468 kb on + strand, within CCNA_02748 at 2910.468 kb on + strand, within CCNA_02748 at 2910.476 kb on - strand, within CCNA_02748 at 2910.476 kb on - strand, within CCNA_02748 at 2910.476 kb on - strand, within CCNA_02748 at 2910.476 kb on - strand, within CCNA_02748 at 2910.504 kb on + strand at 2910.504 kb on + strand at 2910.504 kb on + strand at 2910.512 kb on - strand at 2910.512 kb on - strand at 2910.512 kb on - strand at 2910.512 kb on - strand at 2910.512 kb on - strand at 2910.512 kb on - strand at 2910.520 kb on - strand at 2910.600 kb on + strand, within CCNA_02749 at 2910.613 kb on + strand, within CCNA_02749 at 2910.640 kb on - strand, within CCNA_02749 at 2910.651 kb on + strand, within CCNA_02749 at 2910.651 kb on + strand, within CCNA_02749 at 2910.653 kb on + strand, within CCNA_02749 at 2910.653 kb on + strand, within CCNA_02749 at 2910.659 kb on - strand, within CCNA_02749 at 2910.659 kb on - strand, within CCNA_02749 at 2910.660 kb on - strand, within CCNA_02749 at 2910.661 kb on - strand, within CCNA_02749 at 2910.685 kb on + strand, within CCNA_02749 at 2910.728 kb on + strand, within CCNA_02749 at 2910.745 kb on + strand, within CCNA_02749 at 2910.792 kb on - strand, within CCNA_02749 at 2910.794 kb on + strand, within CCNA_02749 at 2910.794 kb on + strand, within CCNA_02749 at 2910.794 kb on + strand, within CCNA_02749 at 2910.794 kb on + strand, within CCNA_02749 at 2910.800 kb on - strand, within CCNA_02749 at 2910.802 kb on - strand, within CCNA_02749 at 2910.842 kb on + strand, within CCNA_02749 at 2910.844 kb on - strand, within CCNA_02749 at 2910.879 kb on + strand, within CCNA_02749 at 2910.887 kb on - strand, within CCNA_02749 at 2910.905 kb on + strand, within CCNA_02749 at 2910.927 kb on + strand at 2910.927 kb on + strand at 2910.938 kb on + strand at 2910.938 kb on + strand at 2910.945 kb on + strand at 2910.946 kb on - strand at 2910.946 kb on - strand at 2910.949 kb on - strand at 2910.949 kb on - strand at 2910.954 kb on - strand at 2910.962 kb on + strand at 2910.962 kb on + strand at 2910.965 kb on - strand at 2911.031 kb on + strand at 2911.042 kb on - strand at 2911.057 kb on + strand at 2911.113 kb on - strand, within CCNA_02750 at 2911.164 kb on - strand, within CCNA_02750 at 2911.178 kb on - strand, within CCNA_02750 at 2911.182 kb on + strand, within CCNA_02750 at 2911.201 kb on - strand, within CCNA_02750 at 2911.233 kb on - strand, within CCNA_02750 at 2911.250 kb on - strand, within CCNA_02750 at 2911.267 kb on - strand, within CCNA_02750 at 2911.395 kb on - strand, within CCNA_02750 at 2911.395 kb on - strand, within CCNA_02750 at 2911.416 kb on - strand, within CCNA_02750 at 2911.418 kb on + strand, within CCNA_02750 at 2911.426 kb on - strand, within CCNA_02750 at 2911.463 kb on + strand, within CCNA_02750 at 2911.477 kb on + strand, within CCNA_02750 at 2911.501 kb on + strand, within CCNA_02750 at 2911.501 kb on + strand, within CCNA_02750 at 2911.509 kb on - strand, within CCNA_02750 at 2911.509 kb on - strand, within CCNA_02750 at 2911.509 kb on - strand, within CCNA_02750 at 2911.509 kb on - strand, within CCNA_02750 at 2911.515 kb on + strand, within CCNA_02750 at 2911.524 kb on + strand, within CCNA_02750 at 2911.532 kb on - strand, within CCNA_02750 at 2911.558 kb on - strand, within CCNA_02750 at 2911.558 kb on - strand, within CCNA_02750 at 2911.558 kb on - strand, within CCNA_02750 at 2911.581 kb on + strand, within CCNA_02750 at 2911.584 kb on - strand, within CCNA_02750 at 2911.589 kb on + strand, within CCNA_02750 at 2911.589 kb on - strand, within CCNA_02750 at 2911.617 kb on + strand at 2911.622 kb on - strand at 2911.648 kb on - strand at 2911.662 kb on + strand at 2911.662 kb on + strand at 2911.662 kb on + strand at 2911.662 kb on + strand at 2911.670 kb on - strand at 2911.671 kb on - strand at 2911.725 kb on + strand at 2911.725 kb on + strand at 2911.725 kb on + strand at 2911.725 kb on + strand at 2911.733 kb on - strand at 2911.733 kb on - strand at 2911.738 kb on - strand at 2911.776 kb on - strand at 2911.784 kb on + strand, within CCNA_02751 at 2911.804 kb on + strand, within CCNA_02751 at 2911.804 kb on + strand, within CCNA_02751 at 2911.825 kb on + strand, within CCNA_02751 at 2911.872 kb on + strand, within CCNA_02751 at 2911.875 kb on - strand, within CCNA_02751 at 2911.996 kb on + strand, within CCNA_02751 at 2912.085 kb on - strand, within CCNA_02751 at 2912.113 kb on - strand, within CCNA_02751 at 2912.113 kb on - strand, within CCNA_02751 at 2912.118 kb on - strand, within CCNA_02751 at 2912.123 kb on + strand, within CCNA_02751 at 2912.123 kb on + strand, within CCNA_02751 at 2912.131 kb on - strand, within CCNA_02751 at 2912.142 kb on + strand, within CCNA_02751 at 2912.150 kb on - strand, within CCNA_02751 at 2912.155 kb on - strand, within CCNA_02751 at 2912.158 kb on - strand, within CCNA_02751 at 2912.193 kb on - strand, within CCNA_02751 at 2912.195 kb on + strand, within CCNA_02751 at 2912.203 kb on - strand, within CCNA_02751 at 2912.230 kb on - strand, within CCNA_02751 at 2912.236 kb on - strand, within CCNA_02751 at 2912.245 kb on + strand, within CCNA_02751 at 2912.253 kb on - strand, within CCNA_02751 at 2912.253 kb on - strand, within CCNA_02751 at 2912.253 kb on - strand, within CCNA_02751 at 2912.256 kb on + strand, within CCNA_02751 at 2912.268 kb on + strand, within CCNA_02751 at 2912.304 kb on + strand, within CCNA_02751 at 2912.312 kb on + strand, within CCNA_02751 at 2912.312 kb on - strand, within CCNA_02751 at 2912.312 kb on - strand, within CCNA_02751 at 2912.314 kb on + strand, within CCNA_02751 at 2912.314 kb on + strand, within CCNA_02751 at 2912.322 kb on - strand, within CCNA_02751 at 2912.322 kb on - strand, within CCNA_02751 at 2912.328 kb on + strand, within CCNA_02751 at 2912.336 kb on - strand, within CCNA_02751 at 2912.336 kb on - strand, within CCNA_02751 at 2912.336 kb on - strand, within CCNA_02751 at 2912.336 kb on - strand, within CCNA_02751 at 2912.359 kb on + strand, within CCNA_02751 at 2912.468 kb on - strand, within CCNA_02751 at 2912.470 kb on + strand, within CCNA_02751 at 2912.474 kb on + strand, within CCNA_02751 at 2912.478 kb on - strand, within CCNA_02751 at 2912.493 kb on + strand, within CCNA_02751 at 2912.498 kb on + strand, within CCNA_02751 at 2912.498 kb on + strand, within CCNA_02751 at 2912.511 kb on - strand, within CCNA_02751 at 2912.519 kb on + strand, within CCNA_02751 at 2912.519 kb on + strand, within CCNA_02751 at 2912.526 kb on + strand, within CCNA_02751 at 2912.543 kb on - strand, within CCNA_02751 at 2912.545 kb on + strand, within CCNA_02751 at 2912.545 kb on + strand, within CCNA_02751 at 2912.548 kb on - strand, within CCNA_02751 at 2912.553 kb on - strand, within CCNA_02751 at 2912.557 kb on - strand, within CCNA_02751 at 2912.614 kb on - strand at 2912.641 kb on - strand at 2912.651 kb on - strand at 2912.662 kb on + strand at 2912.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 2,910,049 - -0.5 2,910,059 + -1.3 2,910,095 + -0.0 2,910,103 - -1.0 2,910,103 - -1.1 2,910,103 - +2.5 2,910,103 - -0.7 2,910,103 - -0.5 2,910,103 - +0.5 2,910,117 + +0.5 2,910,117 + +0.1 2,910,117 + +1.5 2,910,117 + +0.9 2,910,125 - -0.1 2,910,125 - +1.9 2,910,125 - -0.3 2,910,125 - -0.5 2,910,125 - +0.9 2,910,125 - +2.5 2,910,125 - +0.1 2,910,125 - -0.5 2,910,125 - +0.5 2,910,161 - -1.4 2,910,209 + +0.1 2,910,231 + +3.7 2,910,233 - +0.9 2,910,286 + +0.9 2,910,286 + -0.9 2,910,291 + CCNA_02748 0.12 -2.1 2,910,294 - CCNA_02748 0.13 -1.4 2,910,299 - CCNA_02748 0.15 +1.5 2,910,309 + CCNA_02748 0.19 +0.3 2,910,318 + CCNA_02748 0.22 +2.5 2,910,324 - CCNA_02748 0.25 +0.5 2,910,324 - CCNA_02748 0.25 -1.4 2,910,326 - CCNA_02748 0.26 -0.4 2,910,326 - CCNA_02748 0.26 -0.9 2,910,326 - CCNA_02748 0.26 -0.9 2,910,366 + CCNA_02748 0.42 -0.0 2,910,428 + CCNA_02748 0.67 -0.1 2,910,428 + CCNA_02748 0.67 -0.7 2,910,468 + CCNA_02748 0.83 -0.7 2,910,468 + CCNA_02748 0.83 -1.7 2,910,468 + CCNA_02748 0.83 +0.9 2,910,468 + CCNA_02748 0.83 +0.1 2,910,476 - CCNA_02748 0.86 +4.0 2,910,476 - CCNA_02748 0.86 +0.5 2,910,476 - CCNA_02748 0.86 +1.7 2,910,476 - CCNA_02748 0.86 +1.5 2,910,504 + +0.9 2,910,504 + -1.9 2,910,504 + -1.3 2,910,512 - -1.4 2,910,512 - +0.8 2,910,512 - +1.7 2,910,512 - +0.5 2,910,512 - +2.4 2,910,512 - -0.4 2,910,520 - -0.1 2,910,600 + CCNA_02749 0.19 +0.6 2,910,613 + CCNA_02749 0.22 +1.2 2,910,640 - CCNA_02749 0.28 +0.7 2,910,651 + CCNA_02749 0.30 -0.8 2,910,651 + CCNA_02749 0.30 +1.3 2,910,653 + CCNA_02749 0.31 +1.1 2,910,653 + CCNA_02749 0.31 +1.5 2,910,659 - CCNA_02749 0.32 +1.4 2,910,659 - CCNA_02749 0.32 +1.4 2,910,660 - CCNA_02749 0.32 +0.5 2,910,661 - CCNA_02749 0.33 -0.1 2,910,685 + CCNA_02749 0.38 -0.1 2,910,728 + CCNA_02749 0.48 -2.4 2,910,745 + CCNA_02749 0.51 +0.6 2,910,792 - CCNA_02749 0.62 +0.5 2,910,794 + CCNA_02749 0.62 -0.4 2,910,794 + CCNA_02749 0.62 +2.0 2,910,794 + CCNA_02749 0.62 -0.1 2,910,794 + CCNA_02749 0.62 -0.7 2,910,800 - CCNA_02749 0.64 -0.1 2,910,802 - CCNA_02749 0.64 +1.5 2,910,842 + CCNA_02749 0.73 -0.1 2,910,844 - CCNA_02749 0.73 +1.2 2,910,879 + CCNA_02749 0.81 +1.2 2,910,887 - CCNA_02749 0.83 +0.3 2,910,905 + CCNA_02749 0.87 +1.9 2,910,927 + +1.5 2,910,927 + +1.0 2,910,938 + -0.7 2,910,938 + -0.4 2,910,945 + +0.6 2,910,946 - +0.9 2,910,946 - +0.9 2,910,949 - +0.1 2,910,949 - +1.4 2,910,954 - +0.5 2,910,962 + -1.6 2,910,962 + -1.7 2,910,965 - +2.7 2,911,031 + -0.5 2,911,042 - +2.8 2,911,057 + +0.9 2,911,113 - CCNA_02750 0.16 +1.1 2,911,164 - CCNA_02750 0.23 +0.9 2,911,178 - CCNA_02750 0.25 +1.6 2,911,182 + CCNA_02750 0.26 +0.3 2,911,201 - CCNA_02750 0.29 +1.6 2,911,233 - CCNA_02750 0.33 +0.9 2,911,250 - CCNA_02750 0.36 +1.4 2,911,267 - CCNA_02750 0.38 +1.7 2,911,395 - CCNA_02750 0.57 +0.3 2,911,395 - CCNA_02750 0.57 +1.3 2,911,416 - CCNA_02750 0.60 +1.3 2,911,418 + CCNA_02750 0.61 -0.5 2,911,426 - CCNA_02750 0.62 +1.7 2,911,463 + CCNA_02750 0.67 -0.1 2,911,477 + CCNA_02750 0.69 +0.9 2,911,501 + CCNA_02750 0.73 -0.1 2,911,501 + CCNA_02750 0.73 +1.5 2,911,509 - CCNA_02750 0.74 +1.1 2,911,509 - CCNA_02750 0.74 +1.3 2,911,509 - CCNA_02750 0.74 +1.9 2,911,509 - CCNA_02750 0.74 +1.1 2,911,515 + CCNA_02750 0.75 -0.4 2,911,524 + CCNA_02750 0.76 -0.1 2,911,532 - CCNA_02750 0.78 +1.9 2,911,558 - CCNA_02750 0.81 +2.5 2,911,558 - CCNA_02750 0.81 +1.3 2,911,558 - CCNA_02750 0.81 +0.1 2,911,581 + CCNA_02750 0.85 -0.4 2,911,584 - CCNA_02750 0.85 +1.0 2,911,589 + CCNA_02750 0.86 -1.3 2,911,589 - CCNA_02750 0.86 -0.1 2,911,617 + -1.0 2,911,622 - -0.1 2,911,648 - +0.2 2,911,662 + -1.3 2,911,662 + +0.5 2,911,662 + -1.4 2,911,662 + -0.7 2,911,670 - +0.7 2,911,671 - +0.9 2,911,725 + -0.5 2,911,725 + +1.9 2,911,725 + -0.9 2,911,725 + -0.5 2,911,733 - +0.5 2,911,733 - +0.9 2,911,738 - +1.2 2,911,776 - +0.5 2,911,784 + CCNA_02751 0.11 +0.9 2,911,804 + CCNA_02751 0.13 +0.9 2,911,804 + CCNA_02751 0.13 -0.9 2,911,825 + CCNA_02751 0.15 -1.3 2,911,872 + CCNA_02751 0.19 +0.1 2,911,875 - CCNA_02751 0.20 +0.9 2,911,996 + CCNA_02751 0.32 -0.5 2,912,085 - CCNA_02751 0.41 +1.0 2,912,113 - CCNA_02751 0.43 +1.1 2,912,113 - CCNA_02751 0.43 +0.6 2,912,118 - CCNA_02751 0.44 -0.3 2,912,123 + CCNA_02751 0.44 +1.1 2,912,123 + CCNA_02751 0.44 +0.6 2,912,131 - CCNA_02751 0.45 +1.1 2,912,142 + CCNA_02751 0.46 -0.4 2,912,150 - CCNA_02751 0.47 +0.3 2,912,155 - CCNA_02751 0.48 +0.2 2,912,158 - CCNA_02751 0.48 +0.8 2,912,193 - CCNA_02751 0.51 +1.8 2,912,195 + CCNA_02751 0.52 -1.7 2,912,203 - CCNA_02751 0.52 +1.2 2,912,230 - CCNA_02751 0.55 -0.3 2,912,236 - CCNA_02751 0.56 +1.6 2,912,245 + CCNA_02751 0.57 +1.5 2,912,253 - CCNA_02751 0.57 -0.8 2,912,253 - CCNA_02751 0.57 +1.1 2,912,253 - CCNA_02751 0.57 -0.4 2,912,256 + CCNA_02751 0.58 +1.1 2,912,268 + CCNA_02751 0.59 +0.5 2,912,304 + CCNA_02751 0.63 +0.1 2,912,312 + CCNA_02751 0.63 +3.5 2,912,312 - CCNA_02751 0.63 -0.9 2,912,312 - CCNA_02751 0.63 +1.6 2,912,314 + CCNA_02751 0.64 -0.5 2,912,314 + CCNA_02751 0.64 +0.5 2,912,322 - CCNA_02751 0.64 +1.1 2,912,322 - CCNA_02751 0.64 +0.5 2,912,328 + CCNA_02751 0.65 +1.0 2,912,336 - CCNA_02751 0.66 -0.1 2,912,336 - CCNA_02751 0.66 +0.0 2,912,336 - CCNA_02751 0.66 +0.2 2,912,336 - CCNA_02751 0.66 +1.0 2,912,359 + CCNA_02751 0.68 +1.5 2,912,468 - CCNA_02751 0.79 +0.6 2,912,470 + CCNA_02751 0.79 +2.0 2,912,474 + CCNA_02751 0.80 -2.0 2,912,478 - CCNA_02751 0.80 +0.0 2,912,493 + CCNA_02751 0.81 -0.1 2,912,498 + CCNA_02751 0.82 -1.6 2,912,498 + CCNA_02751 0.82 +0.9 2,912,511 - CCNA_02751 0.83 -0.5 2,912,519 + CCNA_02751 0.84 -1.2 2,912,519 + CCNA_02751 0.84 +0.1 2,912,526 + CCNA_02751 0.85 +0.1 2,912,543 - CCNA_02751 0.86 -0.2 2,912,545 + CCNA_02751 0.87 -1.3 2,912,545 + CCNA_02751 0.87 -1.8 2,912,548 - CCNA_02751 0.87 +0.6 2,912,553 - CCNA_02751 0.87 +1.9 2,912,557 - CCNA_02751 0.88 +0.9 2,912,614 - -0.1 2,912,641 - +1.5 2,912,651 - -0.7 2,912,662 + +0.1 2,912,670 - +0.6
Or see this region's nucleotide sequence