Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02741

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02739 and CCNA_02740 overlap by 4 nucleotidesCCNA_02740 and CCNA_02741 are separated by 211 nucleotidesCCNA_02741 and CCNA_02742 are separated by 180 nucleotides CCNA_02739: CCNA_02739 - transposase, at 2,899,970 to 2,900,950 _02739 CCNA_02740: CCNA_02740 - transposase, at 2,900,947 to 2,901,381 _02740 CCNA_02741: CCNA_02741 - hypothetical protein, at 2,901,593 to 2,902,285 _02741 CCNA_02742: CCNA_02742 - hypothetical protein, at 2,902,466 to 2,903,737 _02742 Position (kb) 2901 2902 2903Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2901.362 kb on + strandat 2901.375 kb on + strandat 2901.375 kb on + strandat 2901.448 kb on - strandat 2901.451 kb on - strandat 2901.501 kb on + strandat 2901.541 kb on + strandat 2901.541 kb on + strandat 2901.541 kb on + strandat 2901.549 kb on - strandat 2901.549 kb on - strandat 2901.582 kb on + strandat 2901.582 kb on + strandat 2901.590 kb on - strandat 2901.591 kb on - strandat 2901.599 kb on + strandat 2901.667 kb on + strand, within CCNA_02741at 2901.667 kb on + strand, within CCNA_02741at 2901.675 kb on - strand, within CCNA_02741at 2901.696 kb on + strand, within CCNA_02741at 2901.761 kb on + strand, within CCNA_02741at 2901.764 kb on - strand, within CCNA_02741at 2901.769 kb on - strand, within CCNA_02741at 2901.774 kb on - strand, within CCNA_02741at 2901.790 kb on + strand, within CCNA_02741at 2901.790 kb on + strand, within CCNA_02741at 2901.798 kb on + strand, within CCNA_02741at 2901.798 kb on - strand, within CCNA_02741at 2901.798 kb on - strand, within CCNA_02741at 2901.855 kb on + strand, within CCNA_02741at 2901.882 kb on + strand, within CCNA_02741at 2901.901 kb on + strand, within CCNA_02741at 2901.909 kb on - strand, within CCNA_02741at 2901.926 kb on + strand, within CCNA_02741at 2901.926 kb on + strand, within CCNA_02741at 2901.981 kb on + strand, within CCNA_02741at 2901.981 kb on + strand, within CCNA_02741at 2901.981 kb on + strand, within CCNA_02741at 2902.020 kb on - strand, within CCNA_02741at 2902.028 kb on - strand, within CCNA_02741at 2902.144 kb on + strand, within CCNA_02741at 2902.168 kb on + strand, within CCNA_02741at 2902.168 kb on + strand, within CCNA_02741at 2902.168 kb on + strand, within CCNA_02741at 2902.215 kb on + strand, within CCNA_02741at 2902.241 kb on + strandat 2902.241 kb on + strandat 2902.241 kb on + strandat 2902.241 kb on + strandat 2902.241 kb on + strandat 2902.249 kb on - strandat 2902.249 kb on - strandat 2902.384 kb on - strandat 2902.413 kb on + strandat 2902.421 kb on - strandat 2902.524 kb on - strandat 2902.540 kb on + strandat 2902.548 kb on - strandat 2902.552 kb on + strandat 2902.560 kb on - strandat 2902.564 kb on + strandat 2902.629 kb on - strand, within CCNA_02742at 2902.631 kb on - strand, within CCNA_02742at 2902.640 kb on - strand, within CCNA_02742at 2902.642 kb on + strand, within CCNA_02742at 2902.650 kb on - strand, within CCNA_02742at 2902.650 kb on - strand, within CCNA_02742at 2902.660 kb on - strand, within CCNA_02742at 2902.705 kb on + strand, within CCNA_02742at 2902.710 kb on + strandat 2902.712 kb on + strand, within CCNA_02742at 2902.713 kb on - strand, within CCNA_02742at 2902.713 kb on - strand, within CCNA_02742at 2902.717 kb on + strand, within CCNA_02742at 2902.717 kb on + strand, within CCNA_02742at 2902.722 kb on + strand, within CCNA_02742at 2902.725 kb on - strand, within CCNA_02742at 2902.725 kb on - strand, within CCNA_02742at 2902.725 kb on - strand, within CCNA_02742at 2902.731 kb on + strand, within CCNA_02742at 2902.739 kb on - strand, within CCNA_02742at 2902.739 kb on - strand, within CCNA_02742at 2902.761 kb on + strand, within CCNA_02742at 2902.769 kb on - strand, within CCNA_02742at 2902.769 kb on - strand, within CCNA_02742at 2902.769 kb on - strand, within CCNA_02742at 2902.774 kb on + strand, within CCNA_02742at 2902.782 kb on - strand, within CCNA_02742at 2902.793 kb on - strand, within CCNA_02742at 2902.833 kb on - strand, within CCNA_02742at 2902.856 kb on - strand, within CCNA_02742at 2902.861 kb on + strand, within CCNA_02742at 2902.868 kb on + strand, within CCNA_02742at 2902.869 kb on + strand, within CCNA_02742at 2902.869 kb on - strand, within CCNA_02742at 2902.873 kb on + strand, within CCNA_02742at 2902.882 kb on - strand, within CCNA_02742at 2902.888 kb on - strand, within CCNA_02742at 2902.969 kb on - strand, within CCNA_02742at 2903.026 kb on + strand, within CCNA_02742at 2903.064 kb on + strand, within CCNA_02742at 2903.064 kb on + strand, within CCNA_02742at 2903.064 kb on + strand, within CCNA_02742at 2903.072 kb on - strand, within CCNA_02742at 2903.072 kb on - strand, within CCNA_02742at 2903.115 kb on - strand, within CCNA_02742at 2903.120 kb on + strand, within CCNA_02742at 2903.172 kb on - strand, within CCNA_02742at 2903.210 kb on + strand, within CCNA_02742at 2903.263 kb on + strand, within CCNA_02742at 2903.270 kb on + strand, within CCNA_02742at 2903.275 kb on + strand, within CCNA_02742at 2903.280 kb on + strand, within CCNA_02742

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
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2,901,362 + +1.4
2,901,375 + -0.2
2,901,375 + +0.1
2,901,448 - -1.3
2,901,451 - +1.1
2,901,501 + +1.0
2,901,541 + +0.8
2,901,541 + +1.3
2,901,541 + +0.2
2,901,549 - +2.4
2,901,549 - +0.8
2,901,582 + +0.8
2,901,582 + +1.4
2,901,590 - +2.4
2,901,591 - +1.2
2,901,599 + +0.8
2,901,667 + CCNA_02741 0.11 +0.5
2,901,667 + CCNA_02741 0.11 +1.1
2,901,675 - CCNA_02741 0.12 +1.0
2,901,696 + CCNA_02741 0.15 -0.1
2,901,761 + CCNA_02741 0.24 +0.0
2,901,764 - CCNA_02741 0.25 -1.0
2,901,769 - CCNA_02741 0.25 -1.0
2,901,774 - CCNA_02741 0.26 +0.0
2,901,790 + CCNA_02741 0.28 -1.1
2,901,790 + CCNA_02741 0.28 -0.2
2,901,798 + CCNA_02741 0.30 +1.1
2,901,798 - CCNA_02741 0.30 +0.8
2,901,798 - CCNA_02741 0.30 -2.8
2,901,855 + CCNA_02741 0.38 +1.6
2,901,882 + CCNA_02741 0.42 +0.8
2,901,901 + CCNA_02741 0.44 -0.8
2,901,909 - CCNA_02741 0.46 +0.5
2,901,926 + CCNA_02741 0.48 +1.2
2,901,926 + CCNA_02741 0.48 +0.5
2,901,981 + CCNA_02741 0.56 +1.0
2,901,981 + CCNA_02741 0.56 +0.9
2,901,981 + CCNA_02741 0.56 +0.0
2,902,020 - CCNA_02741 0.62 -0.4
2,902,028 - CCNA_02741 0.63 -2.2
2,902,144 + CCNA_02741 0.80 +0.6
2,902,168 + CCNA_02741 0.83 +1.9
2,902,168 + CCNA_02741 0.83 +0.6
2,902,168 + CCNA_02741 0.83 +1.4
2,902,215 + CCNA_02741 0.90 +1.3
2,902,241 + +2.2
2,902,241 + +1.9
2,902,241 + +1.6
2,902,241 + +1.9
2,902,241 + +2.0
2,902,249 - -1.3
2,902,249 - +1.4
2,902,384 - +2.4
2,902,413 + +1.8
2,902,421 - +0.9
2,902,524 - +1.7
2,902,540 + -0.6
2,902,548 - +1.3
2,902,552 + -0.2
2,902,560 - +2.1
2,902,564 + +0.8
2,902,629 - CCNA_02742 0.13 +0.5
2,902,631 - CCNA_02742 0.13 +0.9
2,902,640 - CCNA_02742 0.14 -0.2
2,902,642 + CCNA_02742 0.14 +1.8
2,902,650 - CCNA_02742 0.14 +0.8
2,902,650 - CCNA_02742 0.14 +1.4
2,902,660 - CCNA_02742 0.15 +1.3
2,902,705 + CCNA_02742 0.19 -0.8
2,902,710 + +1.4
2,902,712 + CCNA_02742 0.19 +0.8
2,902,713 - CCNA_02742 0.19 +1.2
2,902,713 - CCNA_02742 0.19 +0.6
2,902,717 + CCNA_02742 0.20 -0.5
2,902,717 + CCNA_02742 0.20 +2.4
2,902,722 + CCNA_02742 0.20 +0.0
2,902,725 - CCNA_02742 0.20 +1.0
2,902,725 - CCNA_02742 0.20 +1.4
2,902,725 - CCNA_02742 0.20 +1.6
2,902,731 + CCNA_02742 0.21 +0.0
2,902,739 - CCNA_02742 0.21 +1.1
2,902,739 - CCNA_02742 0.21 +1.4
2,902,761 + CCNA_02742 0.23 -0.4
2,902,769 - CCNA_02742 0.24 +1.4
2,902,769 - CCNA_02742 0.24 +0.8
2,902,769 - CCNA_02742 0.24 +1.8
2,902,774 + CCNA_02742 0.24 +1.0
2,902,782 - CCNA_02742 0.25 +2.4
2,902,793 - CCNA_02742 0.26 +1.2
2,902,833 - CCNA_02742 0.29 +0.8
2,902,856 - CCNA_02742 0.31 +0.8
2,902,861 + CCNA_02742 0.31 -0.8
2,902,868 + CCNA_02742 0.32 -0.8
2,902,869 + CCNA_02742 0.32 +1.0
2,902,869 - CCNA_02742 0.32 +0.4
2,902,873 + CCNA_02742 0.32 -1.8
2,902,882 - CCNA_02742 0.33 +1.2
2,902,888 - CCNA_02742 0.33 +1.8
2,902,969 - CCNA_02742 0.40 +0.9
2,903,026 + CCNA_02742 0.44 +1.8
2,903,064 + CCNA_02742 0.47 +0.0
2,903,064 + CCNA_02742 0.47 -1.6
2,903,064 + CCNA_02742 0.47 +1.1
2,903,072 - CCNA_02742 0.48 +1.0
2,903,072 - CCNA_02742 0.48 -0.4
2,903,115 - CCNA_02742 0.51 +0.5
2,903,120 + CCNA_02742 0.51 -0.6
2,903,172 - CCNA_02742 0.56 +0.1
2,903,210 + CCNA_02742 0.58 -1.1
2,903,263 + CCNA_02742 0.63 -0.4
2,903,270 + CCNA_02742 0.63 -1.5
2,903,275 + CCNA_02742 0.64 +1.4
2,903,280 + CCNA_02742 0.64 -1.2

Or see this region's nucleotide sequence