Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_R0057 and CCNA_02419 are separated by 128 nucleotides CCNA_02419 and CCNA_02420 are separated by 10 nucleotides CCNA_02420 and CCNA_02421 are separated by 5 nucleotides
CCNA_R0057: CCNA_R0057 - tRNA-His, at 2,563,345 to 2,563,421
_R0057
CCNA_02419: CCNA_02419 - TonB1 protein, at 2,563,550 to 2,564,281
_02419
CCNA_02420: CCNA_02420 - TonB accessory protein exbD, at 2,564,292 to 2,564,726
_02420
CCNA_02421: CCNA_02421 - TonB accessory protein exbB, at 2,564,732 to 2,565,640
_02421
Position (kb)
2564
2565 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2563.541 kb on + strand at 2563.601 kb on - strand at 2563.625 kb on - strand, within CCNA_02419 at 2563.637 kb on - strand, within CCNA_02419 at 2563.706 kb on + strand, within CCNA_02419 at 2563.714 kb on - strand, within CCNA_02419 at 2563.718 kb on + strand, within CCNA_02419 at 2563.726 kb on - strand, within CCNA_02419 at 2563.734 kb on + strand, within CCNA_02419 at 2563.780 kb on + strand, within CCNA_02419 at 2563.785 kb on + strand, within CCNA_02419 at 2563.793 kb on - strand, within CCNA_02419 at 2563.802 kb on + strand, within CCNA_02419 at 2563.810 kb on - strand, within CCNA_02419 at 2563.895 kb on - strand, within CCNA_02419 at 2564.081 kb on + strand, within CCNA_02419 at 2564.235 kb on - strand at 2564.303 kb on + strand at 2564.308 kb on + strand at 2564.668 kb on + strand, within CCNA_02420 at 2565.640 kb on + strand at 2565.661 kb on + strand at 2565.706 kb on + strand at 2565.711 kb on + strand at 2565.711 kb on + strand at 2565.711 kb on + strand at 2565.711 kb on + strand at 2565.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 2,563,541 + -1.0 2,563,601 - +3.2 2,563,625 - CCNA_02419 0.10 +3.1 2,563,637 - CCNA_02419 0.12 +3.0 2,563,706 + CCNA_02419 0.21 -0.4 2,563,714 - CCNA_02419 0.22 +3.2 2,563,718 + CCNA_02419 0.23 -0.5 2,563,726 - CCNA_02419 0.24 +3.0 2,563,734 + CCNA_02419 0.25 +1.3 2,563,780 + CCNA_02419 0.31 +0.7 2,563,785 + CCNA_02419 0.32 -0.0 2,563,793 - CCNA_02419 0.33 +2.8 2,563,802 + CCNA_02419 0.34 -1.5 2,563,810 - CCNA_02419 0.36 +3.4 2,563,895 - CCNA_02419 0.47 +3.2 2,564,081 + CCNA_02419 0.73 +1.3 2,564,235 - +3.1 2,564,303 + -1.4 2,564,308 + -0.0 2,564,668 + CCNA_02420 0.86 -0.7 2,565,640 + -1.8 2,565,661 + -0.3 2,565,706 + -0.3 2,565,711 + +1.3 2,565,711 + +0.3 2,565,711 + -0.3 2,565,711 + -3.5 2,565,719 - +3.0
Or see this region's nucleotide sequence