Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02329

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02328 and CCNA_02329 are separated by 275 nucleotidesCCNA_02329 and CCNA_02330 are separated by 27 nucleotidesCCNA_02330 and CCNA_02331 overlap by 16 nucleotides CCNA_02328: CCNA_02328 - cell cycle regulatory protein GcrA, at 2,470,434 to 2,470,955 _02328 CCNA_02329: CCNA_02329 - exodeoxyribonuclease VII large subunit, at 2,471,231 to 2,472,748 _02329 CCNA_02330: CCNA_02330 - hypothetical protein, at 2,472,776 to 2,472,991 _02330 CCNA_02331: CCNA_02331 - peptidoglycan-specific endopeptidase, M23 family, at 2,472,976 to 2,473,827 _02331 Position (kb) 2471 2472 2473Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2470.335 kb on + strandat 2470.383 kb on - strandat 2470.411 kb on + strandat 2470.888 kb on + strand, within CCNA_02328at 2470.901 kb on - strand, within CCNA_02328at 2470.928 kb on + strandat 2470.931 kb on - strandat 2470.959 kb on + strandat 2470.959 kb on + strandat 2470.967 kb on - strandat 2470.967 kb on - strandat 2471.021 kb on + strandat 2471.033 kb on + strandat 2471.041 kb on - strandat 2471.041 kb on - strandat 2471.041 kb on - strandat 2471.041 kb on - strandat 2471.091 kb on - strandat 2471.113 kb on + strandat 2471.128 kb on + strandat 2471.148 kb on - strandat 2471.276 kb on + strandat 2471.284 kb on - strandat 2471.320 kb on + strandat 2471.365 kb on + strandat 2471.426 kb on + strand, within CCNA_02329at 2471.456 kb on - strand, within CCNA_02329at 2471.472 kb on + strand, within CCNA_02329at 2471.472 kb on + strand, within CCNA_02329at 2471.480 kb on - strand, within CCNA_02329at 2471.497 kb on + strand, within CCNA_02329at 2471.505 kb on - strand, within CCNA_02329at 2471.544 kb on + strand, within CCNA_02329at 2471.603 kb on - strand, within CCNA_02329at 2471.604 kb on - strand, within CCNA_02329at 2471.620 kb on + strand, within CCNA_02329at 2471.628 kb on - strand, within CCNA_02329at 2471.739 kb on + strand, within CCNA_02329at 2471.744 kb on + strand, within CCNA_02329at 2471.757 kb on - strand, within CCNA_02329at 2471.765 kb on + strand, within CCNA_02329at 2471.773 kb on - strand, within CCNA_02329at 2471.786 kb on + strand, within CCNA_02329at 2471.794 kb on - strand, within CCNA_02329at 2471.799 kb on - strand, within CCNA_02329at 2471.850 kb on + strand, within CCNA_02329at 2471.893 kb on + strand, within CCNA_02329at 2471.915 kb on + strand, within CCNA_02329at 2471.923 kb on - strand, within CCNA_02329at 2471.923 kb on - strand, within CCNA_02329at 2471.923 kb on - strand, within CCNA_02329at 2471.953 kb on + strand, within CCNA_02329at 2471.987 kb on - strand, within CCNA_02329at 2471.987 kb on - strand, within CCNA_02329at 2472.051 kb on - strand, within CCNA_02329at 2472.116 kb on - strand, within CCNA_02329at 2472.120 kb on + strand, within CCNA_02329at 2472.120 kb on + strand, within CCNA_02329at 2472.140 kb on + strand, within CCNA_02329at 2472.189 kb on + strand, within CCNA_02329at 2472.244 kb on - strand, within CCNA_02329at 2472.247 kb on + strand, within CCNA_02329at 2472.271 kb on - strand, within CCNA_02329at 2472.305 kb on - strand, within CCNA_02329at 2472.432 kb on + strand, within CCNA_02329at 2472.682 kb on - strandat 2472.690 kb on + strandat 2472.698 kb on - strandat 2472.727 kb on + strandat 2472.742 kb on + strandat 2472.750 kb on - strandat 2472.750 kb on - strandat 2472.813 kb on + strand, within CCNA_02330at 2472.834 kb on - strand, within CCNA_02330at 2472.853 kb on + strand, within CCNA_02330at 2472.872 kb on + strand, within CCNA_02330at 2472.911 kb on + strand, within CCNA_02330at 2472.921 kb on + strand, within CCNA_02330at 2472.943 kb on + strand, within CCNA_02330at 2472.943 kb on + strand, within CCNA_02330at 2472.944 kb on + strand, within CCNA_02330at 2472.951 kb on - strand, within CCNA_02330at 2472.967 kb on + strand, within CCNA_02330at 2472.975 kb on - strandat 2473.006 kb on - strandat 2473.011 kb on - strandat 2473.011 kb on - strandat 2473.011 kb on - strandat 2473.032 kb on - strandat 2473.033 kb on - strandat 2473.105 kb on + strand, within CCNA_02331at 2473.136 kb on + strand, within CCNA_02331at 2473.145 kb on + strand, within CCNA_02331at 2473.145 kb on + strand, within CCNA_02331at 2473.153 kb on - strand, within CCNA_02331at 2473.238 kb on - strand, within CCNA_02331at 2473.310 kb on + strand, within CCNA_02331at 2473.310 kb on + strand, within CCNA_02331at 2473.323 kb on - strand, within CCNA_02331at 2473.500 kb on - strand, within CCNA_02331at 2473.513 kb on + strand, within CCNA_02331at 2473.607 kb on + strand, within CCNA_02331at 2473.627 kb on + strand, within CCNA_02331at 2473.635 kb on - strand, within CCNA_02331at 2473.651 kb on - strand, within CCNA_02331at 2473.747 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
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2,470,335 + +1.7
2,470,383 - +1.1
2,470,411 + +2.5
2,470,888 + CCNA_02328 0.87 +3.5
2,470,901 - CCNA_02328 0.89 -0.1
2,470,928 + +3.6
2,470,931 - -0.2
2,470,959 + +3.1
2,470,959 + +3.3
2,470,967 - +1.1
2,470,967 - +2.1
2,471,021 + -2.0
2,471,033 + +0.1
2,471,041 - -0.9
2,471,041 - -0.1
2,471,041 - +0.5
2,471,041 - -0.7
2,471,091 - -0.2
2,471,113 + -0.5
2,471,128 + -0.7
2,471,148 - -1.1
2,471,276 + +1.1
2,471,284 - +1.1
2,471,320 + -0.7
2,471,365 + -0.7
2,471,426 + CCNA_02329 0.13 -0.3
2,471,456 - CCNA_02329 0.15 +0.1
2,471,472 + CCNA_02329 0.16 -0.6
2,471,472 + CCNA_02329 0.16 -0.7
2,471,480 - CCNA_02329 0.16 -0.2
2,471,497 + CCNA_02329 0.18 +0.1
2,471,505 - CCNA_02329 0.18 -0.5
2,471,544 + CCNA_02329 0.21 -0.7
2,471,603 - CCNA_02329 0.25 +0.1
2,471,604 - CCNA_02329 0.25 -0.9
2,471,620 + CCNA_02329 0.26 -0.5
2,471,628 - CCNA_02329 0.26 -1.6
2,471,739 + CCNA_02329 0.33 +0.7
2,471,744 + CCNA_02329 0.34 -1.2
2,471,757 - CCNA_02329 0.35 -1.1
2,471,765 + CCNA_02329 0.35 +0.5
2,471,773 - CCNA_02329 0.36 -1.1
2,471,786 + CCNA_02329 0.37 -0.2
2,471,794 - CCNA_02329 0.37 -1.4
2,471,799 - CCNA_02329 0.37 -1.5
2,471,850 + CCNA_02329 0.41 -0.2
2,471,893 + CCNA_02329 0.44 -0.7
2,471,915 + CCNA_02329 0.45 -1.5
2,471,923 - CCNA_02329 0.46 -1.4
2,471,923 - CCNA_02329 0.46 +0.5
2,471,923 - CCNA_02329 0.46 -1.6
2,471,953 + CCNA_02329 0.48 +0.5
2,471,987 - CCNA_02329 0.50 +1.1
2,471,987 - CCNA_02329 0.50 +0.1
2,472,051 - CCNA_02329 0.54 +2.1
2,472,116 - CCNA_02329 0.58 -3.1
2,472,120 + CCNA_02329 0.59 +0.4
2,472,120 + CCNA_02329 0.59 +0.5
2,472,140 + CCNA_02329 0.60 -0.2
2,472,189 + CCNA_02329 0.63 -0.9
2,472,244 - CCNA_02329 0.67 -0.1
2,472,247 + CCNA_02329 0.67 +0.3
2,472,271 - CCNA_02329 0.69 +1.5
2,472,305 - CCNA_02329 0.71 -0.5
2,472,432 + CCNA_02329 0.79 -0.5
2,472,682 - +0.1
2,472,690 + +1.7
2,472,698 - -0.6
2,472,727 + +1.1
2,472,742 + +0.7
2,472,750 - +0.5
2,472,750 - +0.5
2,472,813 + CCNA_02330 0.17 +1.2
2,472,834 - CCNA_02330 0.27 +2.3
2,472,853 + CCNA_02330 0.36 +1.8
2,472,872 + CCNA_02330 0.44 +1.8
2,472,911 + CCNA_02330 0.62 +2.2
2,472,921 + CCNA_02330 0.67 +2.0
2,472,943 + CCNA_02330 0.77 +1.6
2,472,943 + CCNA_02330 0.77 +2.0
2,472,944 + CCNA_02330 0.78 +2.5
2,472,951 - CCNA_02330 0.81 -1.1
2,472,967 + CCNA_02330 0.88 +2.3
2,472,975 - -0.0
2,473,006 - -0.4
2,473,011 - +2.1
2,473,011 - +0.1
2,473,011 - -1.4
2,473,032 - -0.2
2,473,033 - -0.2
2,473,105 + CCNA_02331 0.15 +0.7
2,473,136 + CCNA_02331 0.19 +0.5
2,473,145 + CCNA_02331 0.20 +1.4
2,473,145 + CCNA_02331 0.20 +1.8
2,473,153 - CCNA_02331 0.21 +1.1
2,473,238 - CCNA_02331 0.31 -0.7
2,473,310 + CCNA_02331 0.39 -0.2
2,473,310 + CCNA_02331 0.39 +1.2
2,473,323 - CCNA_02331 0.41 +0.0
2,473,500 - CCNA_02331 0.62 -1.9
2,473,513 + CCNA_02331 0.63 +0.6
2,473,607 + CCNA_02331 0.74 +0.2
2,473,627 + CCNA_02331 0.76 +0.9
2,473,635 - CCNA_02331 0.77 -0.5
2,473,651 - CCNA_02331 0.79 +0.5
2,473,747 + +0.5

Or see this region's nucleotide sequence