Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02197

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02194 and CCNA_02195 are separated by 7 nucleotidesCCNA_02195 and CCNA_02196 are separated by 15 nucleotidesCCNA_02196 and CCNA_02197 are separated by 88 nucleotidesCCNA_02197 and CCNA_02198 are separated by 0 nucleotides CCNA_02194: CCNA_02194 - fumarate hydratase, at 2,344,537 to 2,345,928 _02194 CCNA_02195: CCNA_02195 - acetyltransferase, at 2,345,936 to 2,346,370 _02195 CCNA_02196: CCNA_02196 - hypothetical protein, at 2,346,386 to 2,346,784 _02196 CCNA_02197: CCNA_02197 - hypothetical protein, at 2,346,873 to 2,347,463 _02197 CCNA_02198: CCNA_02198 - trans-isoprenyl diphosphate synthase, at 2,347,464 to 2,348,474 _02198 Position (kb) 2346 2347 2348Strain fitness (log2 ratio) -2 -1 0 1 2at 2345.930 kb on - strandat 2345.984 kb on - strand, within CCNA_02195at 2346.004 kb on + strand, within CCNA_02195at 2346.007 kb on - strand, within CCNA_02195at 2346.147 kb on + strand, within CCNA_02195at 2346.174 kb on + strand, within CCNA_02195at 2346.186 kb on + strand, within CCNA_02195at 2346.225 kb on + strand, within CCNA_02195at 2346.230 kb on + strand, within CCNA_02195at 2346.230 kb on + strand, within CCNA_02195at 2346.230 kb on + strand, within CCNA_02195at 2346.238 kb on - strand, within CCNA_02195at 2346.238 kb on - strand, within CCNA_02195at 2346.238 kb on - strand, within CCNA_02195at 2346.243 kb on - strand, within CCNA_02195at 2346.245 kb on + strand, within CCNA_02195at 2346.245 kb on + strand, within CCNA_02195at 2346.245 kb on + strand, within CCNA_02195at 2346.253 kb on - strand, within CCNA_02195at 2346.255 kb on - strand, within CCNA_02195at 2346.304 kb on + strand, within CCNA_02195at 2346.312 kb on - strand, within CCNA_02195at 2346.312 kb on - strand, within CCNA_02195at 2346.312 kb on - strand, within CCNA_02195at 2346.312 kb on - strand, within CCNA_02195at 2346.321 kb on + strand, within CCNA_02195at 2346.321 kb on + strand, within CCNA_02195at 2346.329 kb on - strandat 2346.381 kb on + strandat 2346.400 kb on + strandat 2346.506 kb on + strand, within CCNA_02196at 2346.514 kb on - strand, within CCNA_02196at 2346.514 kb on - strand, within CCNA_02196at 2346.558 kb on + strand, within CCNA_02196at 2346.559 kb on - strand, within CCNA_02196at 2346.566 kb on - strand, within CCNA_02196at 2346.642 kb on + strand, within CCNA_02196at 2346.661 kb on - strand, within CCNA_02196at 2346.668 kb on + strand, within CCNA_02196at 2346.674 kb on + strand, within CCNA_02196at 2346.677 kb on - strand, within CCNA_02196at 2346.677 kb on - strand, within CCNA_02196at 2346.677 kb on - strand, within CCNA_02196at 2346.677 kb on - strand, within CCNA_02196at 2346.677 kb on - strand, within CCNA_02196at 2346.677 kb on - strand, within CCNA_02196at 2346.677 kb on - strand, within CCNA_02196at 2346.682 kb on - strand, within CCNA_02196at 2346.700 kb on + strand, within CCNA_02196at 2346.700 kb on + strand, within CCNA_02196at 2346.718 kb on - strand, within CCNA_02196at 2346.764 kb on + strandat 2346.802 kb on + strandat 2346.804 kb on + strandat 2346.812 kb on - strandat 2346.843 kb on - strandat 2346.904 kb on - strandat 2346.964 kb on + strand, within CCNA_02197at 2346.977 kb on - strand, within CCNA_02197at 2346.987 kb on + strand, within CCNA_02197at 2346.995 kb on - strand, within CCNA_02197at 2346.996 kb on - strand, within CCNA_02197at 2346.997 kb on - strand, within CCNA_02197at 2347.004 kb on + strand, within CCNA_02197at 2347.012 kb on - strand, within CCNA_02197at 2347.034 kb on - strand, within CCNA_02197at 2347.066 kb on + strand, within CCNA_02197at 2347.069 kb on - strand, within CCNA_02197at 2347.096 kb on + strand, within CCNA_02197at 2347.101 kb on + strand, within CCNA_02197at 2347.101 kb on + strand, within CCNA_02197at 2347.101 kb on + strand, within CCNA_02197at 2347.101 kb on + strand, within CCNA_02197at 2347.109 kb on - strand, within CCNA_02197at 2347.134 kb on + strand, within CCNA_02197at 2347.135 kb on - strand, within CCNA_02197at 2347.142 kb on - strand, within CCNA_02197at 2347.142 kb on - strand, within CCNA_02197at 2347.143 kb on - strand, within CCNA_02197at 2347.143 kb on - strand, within CCNA_02197at 2347.177 kb on + strand, within CCNA_02197at 2347.177 kb on + strand, within CCNA_02197at 2347.185 kb on - strand, within CCNA_02197at 2347.195 kb on - strand, within CCNA_02197at 2347.263 kb on - strand, within CCNA_02197at 2347.281 kb on - strand, within CCNA_02197at 2347.295 kb on + strand, within CCNA_02197at 2347.296 kb on - strand, within CCNA_02197at 2347.342 kb on - strand, within CCNA_02197at 2347.407 kb on + strandat 2347.409 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
remove
2,345,930 - -0.2
2,345,984 - CCNA_02195 0.11 -0.3
2,346,004 + CCNA_02195 0.16 +1.3
2,346,007 - CCNA_02195 0.16 +0.1
2,346,147 + CCNA_02195 0.49 +1.4
2,346,174 + CCNA_02195 0.55 -0.6
2,346,186 + CCNA_02195 0.57 -0.3
2,346,225 + CCNA_02195 0.66 +0.6
2,346,230 + CCNA_02195 0.68 -0.5
2,346,230 + CCNA_02195 0.68 +0.2
2,346,230 + CCNA_02195 0.68 -1.3
2,346,238 - CCNA_02195 0.69 -1.2
2,346,238 - CCNA_02195 0.69 +1.1
2,346,238 - CCNA_02195 0.69 -0.5
2,346,243 - CCNA_02195 0.71 -0.4
2,346,245 + CCNA_02195 0.71 -0.0
2,346,245 + CCNA_02195 0.71 -0.2
2,346,245 + CCNA_02195 0.71 +0.1
2,346,253 - CCNA_02195 0.73 +0.6
2,346,255 - CCNA_02195 0.73 -0.0
2,346,304 + CCNA_02195 0.85 -0.6
2,346,312 - CCNA_02195 0.86 +1.3
2,346,312 - CCNA_02195 0.86 +0.2
2,346,312 - CCNA_02195 0.86 +1.3
2,346,312 - CCNA_02195 0.86 +1.2
2,346,321 + CCNA_02195 0.89 -1.0
2,346,321 + CCNA_02195 0.89 +0.7
2,346,329 - +0.5
2,346,381 + -0.9
2,346,400 + +2.2
2,346,506 + CCNA_02196 0.30 -1.5
2,346,514 - CCNA_02196 0.32 +1.3
2,346,514 - CCNA_02196 0.32 +0.7
2,346,558 + CCNA_02196 0.43 -0.6
2,346,559 - CCNA_02196 0.43 -0.4
2,346,566 - CCNA_02196 0.45 +0.8
2,346,642 + CCNA_02196 0.64 +0.4
2,346,661 - CCNA_02196 0.69 +1.7
2,346,668 + CCNA_02196 0.71 +2.0
2,346,674 + CCNA_02196 0.72 +1.0
2,346,677 - CCNA_02196 0.73 +1.2
2,346,677 - CCNA_02196 0.73 +2.0
2,346,677 - CCNA_02196 0.73 +0.2
2,346,677 - CCNA_02196 0.73 +2.6
2,346,677 - CCNA_02196 0.73 +0.3
2,346,677 - CCNA_02196 0.73 +0.3
2,346,677 - CCNA_02196 0.73 +1.1
2,346,682 - CCNA_02196 0.74 +1.0
2,346,700 + CCNA_02196 0.79 +1.0
2,346,700 + CCNA_02196 0.79 +1.0
2,346,718 - CCNA_02196 0.83 +0.3
2,346,764 + -0.8
2,346,802 + -0.8
2,346,804 + -0.3
2,346,812 - +0.7
2,346,843 - -1.0
2,346,904 - +0.8
2,346,964 + CCNA_02197 0.15 -2.0
2,346,977 - CCNA_02197 0.18 +1.8
2,346,987 + CCNA_02197 0.19 -0.0
2,346,995 - CCNA_02197 0.21 +2.1
2,346,996 - CCNA_02197 0.21 +1.1
2,346,997 - CCNA_02197 0.21 +2.1
2,347,004 + CCNA_02197 0.22 -0.0
2,347,012 - CCNA_02197 0.24 +1.5
2,347,034 - CCNA_02197 0.27 +1.4
2,347,066 + CCNA_02197 0.33 +1.6
2,347,069 - CCNA_02197 0.33 +0.8
2,347,096 + CCNA_02197 0.38 +2.0
2,347,101 + CCNA_02197 0.39 -1.8
2,347,101 + CCNA_02197 0.39 -0.0
2,347,101 + CCNA_02197 0.39 -0.3
2,347,101 + CCNA_02197 0.39 -0.5
2,347,109 - CCNA_02197 0.40 +0.4
2,347,134 + CCNA_02197 0.44 -1.0
2,347,135 - CCNA_02197 0.44 +0.3
2,347,142 - CCNA_02197 0.46 +2.3
2,347,142 - CCNA_02197 0.46 +1.3
2,347,143 - CCNA_02197 0.46 +1.6
2,347,143 - CCNA_02197 0.46 +0.5
2,347,177 + CCNA_02197 0.51 +0.1
2,347,177 + CCNA_02197 0.51 -0.8
2,347,185 - CCNA_02197 0.53 +1.0
2,347,195 - CCNA_02197 0.54 -0.1
2,347,263 - CCNA_02197 0.66 +1.2
2,347,281 - CCNA_02197 0.69 +1.0
2,347,295 + CCNA_02197 0.71 +0.8
2,347,296 - CCNA_02197 0.72 +1.9
2,347,342 - CCNA_02197 0.79 +1.3
2,347,407 + -1.9
2,347,409 - +2.0

Or see this region's nucleotide sequence