Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01624

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01622 and CCNA_01623 are separated by 137 nucleotidesCCNA_01623 and CCNA_01624 are separated by 80 nucleotidesCCNA_01624 and CCNA_01625 are separated by 171 nucleotides CCNA_01622: CCNA_01622 - Rsh ppGpp hydrolase-synthetase, at 1,742,148 to 1,744,376 _01622 CCNA_01623: CCNA_01623 - phosphohydrolase, MutT/nudix family, at 1,744,514 to 1,744,933 _01623 CCNA_01624: CCNA_01624 - orotate phosphoribosyltransferase, at 1,745,014 to 1,745,598 _01624 CCNA_01625: CCNA_01625 - aminobenzoyl-glutamate utilization protein B, at 1,745,770 to 1,747,389 _01625 Position (kb) 1745 1746Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1744.039 kb on - strandat 1744.201 kb on - strandat 1744.370 kb on + strandat 1744.371 kb on + strandat 1744.399 kb on + strandat 1744.405 kb on + strandat 1744.407 kb on + strandat 1744.407 kb on + strandat 1744.407 kb on - strandat 1744.415 kb on - strandat 1744.433 kb on + strandat 1744.446 kb on + strandat 1744.446 kb on + strandat 1744.454 kb on - strandat 1744.454 kb on - strandat 1744.464 kb on - strandat 1744.464 kb on - strandat 1744.479 kb on + strandat 1744.479 kb on + strandat 1744.479 kb on + strandat 1744.485 kb on - strandat 1744.487 kb on + strandat 1744.487 kb on + strandat 1744.487 kb on - strandat 1744.487 kb on - strandat 1744.487 kb on - strandat 1744.487 kb on - strandat 1744.487 kb on - strandat 1744.495 kb on - strandat 1744.500 kb on + strandat 1744.500 kb on + strandat 1744.500 kb on + strandat 1744.500 kb on + strandat 1744.500 kb on + strandat 1744.501 kb on - strandat 1744.508 kb on - strandat 1744.508 kb on - strandat 1744.508 kb on - strandat 1744.512 kb on + strandat 1744.514 kb on - strandat 1744.518 kb on + strandat 1744.520 kb on - strandat 1744.520 kb on - strandat 1744.520 kb on - strandat 1744.583 kb on - strand, within CCNA_01623at 1744.596 kb on - strand, within CCNA_01623at 1744.607 kb on - strand, within CCNA_01623at 1744.655 kb on + strand, within CCNA_01623at 1744.655 kb on + strand, within CCNA_01623at 1744.655 kb on + strand, within CCNA_01623at 1744.655 kb on + strand, within CCNA_01623at 1744.663 kb on - strand, within CCNA_01623at 1744.665 kb on + strand, within CCNA_01623at 1744.673 kb on - strand, within CCNA_01623at 1744.673 kb on - strand, within CCNA_01623at 1744.771 kb on + strand, within CCNA_01623at 1744.773 kb on + strand, within CCNA_01623at 1744.781 kb on - strand, within CCNA_01623at 1744.821 kb on + strand, within CCNA_01623at 1744.829 kb on - strand, within CCNA_01623at 1744.869 kb on - strand, within CCNA_01623at 1744.871 kb on + strand, within CCNA_01623at 1744.871 kb on + strand, within CCNA_01623at 1744.879 kb on - strand, within CCNA_01623at 1744.887 kb on - strand, within CCNA_01623at 1744.966 kb on - strandat 1745.004 kb on - strandat 1745.072 kb on + strandat 1745.094 kb on + strand, within CCNA_01624at 1745.125 kb on + strand, within CCNA_01624at 1745.165 kb on + strand, within CCNA_01624at 1745.165 kb on - strand, within CCNA_01624at 1745.178 kb on - strand, within CCNA_01624at 1745.207 kb on - strand, within CCNA_01624at 1745.212 kb on - strand, within CCNA_01624at 1745.244 kb on - strand, within CCNA_01624at 1745.244 kb on - strandat 1745.285 kb on - strand, within CCNA_01624at 1745.356 kb on + strand, within CCNA_01624at 1745.356 kb on + strand, within CCNA_01624at 1745.390 kb on - strand, within CCNA_01624at 1745.606 kb on + strandat 1745.622 kb on + strandat 1745.629 kb on - strandat 1745.757 kb on + strandat 1745.757 kb on + strandat 1745.757 kb on + strandat 1745.763 kb on + strandat 1745.765 kb on - strandat 1745.765 kb on - strandat 1745.768 kb on + strandat 1745.768 kb on + strandat 1745.770 kb on - strandat 1745.816 kb on + strandat 1745.834 kb on - strandat 1745.834 kb on - strandat 1745.837 kb on + strandat 1745.916 kb on - strandat 1745.933 kb on + strand, within CCNA_01625at 1745.946 kb on - strand, within CCNA_01625at 1745.953 kb on + strand, within CCNA_01625at 1745.959 kb on - strand, within CCNA_01625at 1745.961 kb on - strand, within CCNA_01625at 1745.961 kb on - strand, within CCNA_01625at 1745.966 kb on + strand, within CCNA_01625at 1745.973 kb on - strand, within CCNA_01625at 1746.005 kb on + strand, within CCNA_01625at 1746.007 kb on - strand, within CCNA_01625at 1746.023 kb on - strand, within CCNA_01625at 1746.024 kb on + strand, within CCNA_01625at 1746.029 kb on + strand, within CCNA_01625at 1746.033 kb on - strand, within CCNA_01625at 1746.033 kb on - strand, within CCNA_01625at 1746.048 kb on + strand, within CCNA_01625at 1746.056 kb on - strand, within CCNA_01625at 1746.056 kb on - strand, within CCNA_01625at 1746.078 kb on - strand, within CCNA_01625at 1746.107 kb on + strand, within CCNA_01625at 1746.112 kb on + strand, within CCNA_01625at 1746.115 kb on - strand, within CCNA_01625at 1746.134 kb on - strand, within CCNA_01625at 1746.170 kb on + strand, within CCNA_01625at 1746.236 kb on + strand, within CCNA_01625at 1746.249 kb on + strand, within CCNA_01625at 1746.283 kb on + strand, within CCNA_01625at 1746.283 kb on + strand, within CCNA_01625at 1746.291 kb on - strand, within CCNA_01625at 1746.291 kb on - strand, within CCNA_01625at 1746.293 kb on + strand, within CCNA_01625at 1746.299 kb on + strand, within CCNA_01625at 1746.301 kb on - strand, within CCNA_01625at 1746.314 kb on + strand, within CCNA_01625at 1746.347 kb on + strand, within CCNA_01625at 1746.376 kb on - strand, within CCNA_01625at 1746.378 kb on + strand, within CCNA_01625at 1746.386 kb on - strand, within CCNA_01625at 1746.409 kb on - strand, within CCNA_01625at 1746.409 kb on - strand, within CCNA_01625at 1746.424 kb on - strand, within CCNA_01625at 1746.492 kb on + strand, within CCNA_01625at 1746.492 kb on + strand, within CCNA_01625at 1746.545 kb on + strand, within CCNA_01625at 1746.545 kb on + strand, within CCNA_01625at 1746.545 kb on + strand, within CCNA_01625at 1746.545 kb on + strand, within CCNA_01625at 1746.545 kb on + strand, within CCNA_01625at 1746.545 kb on + strand, within CCNA_01625at 1746.545 kb on + strand, within CCNA_01625at 1746.545 kb on + strand, within CCNA_01625at 1746.545 kb on + strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.553 kb on - strand, within CCNA_01625at 1746.571 kb on + strand, within CCNA_01625at 1746.591 kb on + strand, within CCNA_01625at 1746.591 kb on + strand, within CCNA_01625

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
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1,744,039 - +1.4
1,744,201 - +0.1
1,744,370 + +1.3
1,744,371 + +2.2
1,744,399 + +2.1
1,744,405 + +2.2
1,744,407 + +1.5
1,744,407 + +1.2
1,744,407 - +1.7
1,744,415 - +2.0
1,744,433 + +0.8
1,744,446 + +0.9
1,744,446 + +0.5
1,744,454 - +0.4
1,744,454 - -1.5
1,744,464 - -0.2
1,744,464 - +0.2
1,744,479 + +0.9
1,744,479 + +1.3
1,744,479 + +0.8
1,744,485 - +1.4
1,744,487 + +0.1
1,744,487 + +0.1
1,744,487 - +0.4
1,744,487 - +0.4
1,744,487 - -2.2
1,744,487 - -1.1
1,744,487 - -0.0
1,744,495 - +1.0
1,744,500 + -0.2
1,744,500 + +0.1
1,744,500 + -0.3
1,744,500 + -0.7
1,744,500 + +0.4
1,744,501 - +1.4
1,744,508 - +3.6
1,744,508 - +1.2
1,744,508 - +0.4
1,744,512 + -0.9
1,744,514 - +2.1
1,744,518 + -1.6
1,744,520 - +1.3
1,744,520 - +2.0
1,744,520 - +0.8
1,744,583 - CCNA_01623 0.16 +1.5
1,744,596 - CCNA_01623 0.20 +1.3
1,744,607 - CCNA_01623 0.22 +1.3
1,744,655 + CCNA_01623 0.34 +0.4
1,744,655 + CCNA_01623 0.34 -1.2
1,744,655 + CCNA_01623 0.34 -0.2
1,744,655 + CCNA_01623 0.34 +0.4
1,744,663 - CCNA_01623 0.35 +1.8
1,744,665 + CCNA_01623 0.36 -3.1
1,744,673 - CCNA_01623 0.38 +1.2
1,744,673 - CCNA_01623 0.38 +1.7
1,744,771 + CCNA_01623 0.61 +0.2
1,744,773 + CCNA_01623 0.62 -0.9
1,744,781 - CCNA_01623 0.64 +1.8
1,744,821 + CCNA_01623 0.73 +0.8
1,744,829 - CCNA_01623 0.75 +1.0
1,744,869 - CCNA_01623 0.85 +0.4
1,744,871 + CCNA_01623 0.85 -0.6
1,744,871 + CCNA_01623 0.85 -0.8
1,744,879 - CCNA_01623 0.87 +1.4
1,744,887 - CCNA_01623 0.89 +1.8
1,744,966 - -0.3
1,745,004 - -0.3
1,745,072 + +0.6
1,745,094 + CCNA_01624 0.14 +0.6
1,745,125 + CCNA_01624 0.19 +2.3
1,745,165 + CCNA_01624 0.26 +2.8
1,745,165 - CCNA_01624 0.26 -1.0
1,745,178 - CCNA_01624 0.28 -1.0
1,745,207 - CCNA_01624 0.33 -0.4
1,745,212 - CCNA_01624 0.34 +1.3
1,745,244 - CCNA_01624 0.39 +2.1
1,745,244 - +1.4
1,745,285 - CCNA_01624 0.46 -0.8
1,745,356 + CCNA_01624 0.58 +3.5
1,745,356 + CCNA_01624 0.58 +2.4
1,745,390 - CCNA_01624 0.64 -0.2
1,745,606 + +2.8
1,745,622 + +3.2
1,745,629 - -0.8
1,745,757 + +2.2
1,745,757 + +1.6
1,745,757 + +5.0
1,745,763 + +0.9
1,745,765 - +1.4
1,745,765 - +0.3
1,745,768 + +2.1
1,745,768 + +1.3
1,745,770 - +0.0
1,745,816 + +1.4
1,745,834 - +0.8
1,745,834 - +0.4
1,745,837 + +0.5
1,745,916 - -1.5
1,745,933 + CCNA_01625 0.10 +1.0
1,745,946 - CCNA_01625 0.11 -0.5
1,745,953 + CCNA_01625 0.11 +1.2
1,745,959 - CCNA_01625 0.12 -1.1
1,745,961 - CCNA_01625 0.12 +0.0
1,745,961 - CCNA_01625 0.12 -0.2
1,745,966 + CCNA_01625 0.12 +1.4
1,745,973 - CCNA_01625 0.13 +1.4
1,746,005 + CCNA_01625 0.15 -2.1
1,746,007 - CCNA_01625 0.15 -0.5
1,746,023 - CCNA_01625 0.16 +1.6
1,746,024 + CCNA_01625 0.16 -0.2
1,746,029 + CCNA_01625 0.16 +1.8
1,746,033 - CCNA_01625 0.16 -0.3
1,746,033 - CCNA_01625 0.16 -1.1
1,746,048 + CCNA_01625 0.17 -0.9
1,746,056 - CCNA_01625 0.18 +0.6
1,746,056 - CCNA_01625 0.18 +0.5
1,746,078 - CCNA_01625 0.19 -0.9
1,746,107 + CCNA_01625 0.21 -0.2
1,746,112 + CCNA_01625 0.21 +0.1
1,746,115 - CCNA_01625 0.21 +0.5
1,746,134 - CCNA_01625 0.22 -1.5
1,746,170 + CCNA_01625 0.25 -0.0
1,746,236 + CCNA_01625 0.29 +0.1
1,746,249 + CCNA_01625 0.30 +3.6
1,746,283 + CCNA_01625 0.32 +0.5
1,746,283 + CCNA_01625 0.32 +0.8
1,746,291 - CCNA_01625 0.32 -1.4
1,746,291 - CCNA_01625 0.32 +1.0
1,746,293 + CCNA_01625 0.32 +0.5
1,746,299 + CCNA_01625 0.33 +2.2
1,746,301 - CCNA_01625 0.33 +1.4
1,746,314 + CCNA_01625 0.34 +2.4
1,746,347 + CCNA_01625 0.36 +1.4
1,746,376 - CCNA_01625 0.37 -1.6
1,746,378 + CCNA_01625 0.38 +0.4
1,746,386 - CCNA_01625 0.38 +0.2
1,746,409 - CCNA_01625 0.39 -0.2
1,746,409 - CCNA_01625 0.39 +0.1
1,746,424 - CCNA_01625 0.40 +0.8
1,746,492 + CCNA_01625 0.45 +0.1
1,746,492 + CCNA_01625 0.45 -1.7
1,746,545 + CCNA_01625 0.48 +0.1
1,746,545 + CCNA_01625 0.48 +0.8
1,746,545 + CCNA_01625 0.48 +0.1
1,746,545 + CCNA_01625 0.48 +3.2
1,746,545 + CCNA_01625 0.48 -2.1
1,746,545 + CCNA_01625 0.48 -1.8
1,746,545 + CCNA_01625 0.48 +0.4
1,746,545 + CCNA_01625 0.48 -0.4
1,746,545 + CCNA_01625 0.48 -1.5
1,746,553 - CCNA_01625 0.48 -1.1
1,746,553 - CCNA_01625 0.48 -1.1
1,746,553 - CCNA_01625 0.48 +0.5
1,746,553 - CCNA_01625 0.48 -0.6
1,746,553 - CCNA_01625 0.48 +0.1
1,746,553 - CCNA_01625 0.48 -0.4
1,746,553 - CCNA_01625 0.48 +0.1
1,746,553 - CCNA_01625 0.48 +1.4
1,746,553 - CCNA_01625 0.48 -1.1
1,746,553 - CCNA_01625 0.48 +0.8
1,746,553 - CCNA_01625 0.48 -0.2
1,746,571 + CCNA_01625 0.49 -0.2
1,746,591 + CCNA_01625 0.51 -0.2
1,746,591 + CCNA_01625 0.51 +0.8

Or see this region's nucleotide sequence