Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01532 and CCNA_01533 are separated by 61 nucleotides CCNA_01533 and CCNA_01534 are separated by 17 nucleotides CCNA_01534 and CCNA_01535 are separated by 256 nucleotides
CCNA_01532: CCNA_01532 - regulatory protein flaY, at 1,639,377 to 1,642,241
_01532
CCNA_01533: CCNA_01533 - hypothetical protein, at 1,642,303 to 1,642,992
_01533
CCNA_01534: CCNA_01534 - hypothetical protein, at 1,643,010 to 1,643,408
_01534
CCNA_01535: CCNA_01535 - single-strand DNA binding protein, at 1,643,665 to 1,644,168
_01535
Position (kb)
1642
1643 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1641.370 kb on + strand, within CCNA_01532 at 1641.387 kb on + strand, within CCNA_01532 at 1641.402 kb on + strand, within CCNA_01532 at 1641.410 kb on - strand, within CCNA_01532 at 1641.410 kb on - strand, within CCNA_01532 at 1641.454 kb on + strand, within CCNA_01532 at 1641.494 kb on + strand, within CCNA_01532 at 1641.494 kb on + strand, within CCNA_01532 at 1641.494 kb on + strand, within CCNA_01532 at 1641.494 kb on + strand, within CCNA_01532 at 1641.502 kb on - strand, within CCNA_01532 at 1641.502 kb on - strand, within CCNA_01532 at 1641.516 kb on + strand, within CCNA_01532 at 1641.524 kb on - strand, within CCNA_01532 at 1641.524 kb on - strand, within CCNA_01532 at 1641.561 kb on - strand, within CCNA_01532 at 1641.584 kb on - strand, within CCNA_01532 at 1641.607 kb on + strand, within CCNA_01532 at 1641.607 kb on + strand, within CCNA_01532 at 1641.607 kb on + strand, within CCNA_01532 at 1641.634 kb on + strand, within CCNA_01532 at 1641.652 kb on - strand, within CCNA_01532 at 1641.698 kb on - strand, within CCNA_01532 at 1641.718 kb on - strand, within CCNA_01532 at 1641.773 kb on + strand, within CCNA_01532 at 1641.781 kb on - strand, within CCNA_01532 at 1641.784 kb on + strand, within CCNA_01532 at 1641.803 kb on + strand, within CCNA_01532 at 1641.811 kb on - strand, within CCNA_01532 at 1641.900 kb on + strand, within CCNA_01532 at 1641.917 kb on + strand, within CCNA_01532 at 1641.936 kb on - strand, within CCNA_01532 at 1641.959 kb on + strand at 1641.967 kb on - strand at 1641.988 kb on - strand at 1642.033 kb on - strand at 1642.041 kb on + strand at 1642.086 kb on - strand at 1642.089 kb on + strand at 1642.119 kb on + strand at 1642.119 kb on + strand at 1642.173 kb on + strand at 1642.173 kb on + strand at 1642.181 kb on - strand at 1642.205 kb on + strand at 1642.213 kb on - strand at 1642.223 kb on - strand at 1642.256 kb on - strand at 1642.308 kb on - strand at 1642.308 kb on - strand at 1642.366 kb on + strand at 1642.366 kb on + strand at 1642.366 kb on + strand at 1642.366 kb on + strand at 1642.366 kb on + strand at 1642.366 kb on + strand at 1642.441 kb on + strand, within CCNA_01533 at 1642.471 kb on - strand, within CCNA_01533 at 1642.487 kb on + strand, within CCNA_01533 at 1642.495 kb on + strand, within CCNA_01533 at 1642.503 kb on - strand, within CCNA_01533 at 1642.532 kb on + strand, within CCNA_01533 at 1642.550 kb on - strand, within CCNA_01533 at 1642.584 kb on + strand, within CCNA_01533 at 1642.605 kb on - strand, within CCNA_01533 at 1642.634 kb on + strand, within CCNA_01533 at 1642.639 kb on + strand, within CCNA_01533 at 1642.642 kb on - strand, within CCNA_01533 at 1642.706 kb on - strand, within CCNA_01533 at 1642.799 kb on + strand, within CCNA_01533 at 1642.799 kb on + strand, within CCNA_01533 at 1642.799 kb on + strand, within CCNA_01533 at 1642.804 kb on + strand, within CCNA_01533 at 1642.814 kb on + strand, within CCNA_01533 at 1642.832 kb on - strand, within CCNA_01533 at 1642.864 kb on + strand, within CCNA_01533 at 1642.866 kb on + strand at 1642.873 kb on - strand, within CCNA_01533 at 1642.957 kb on - strand at 1642.970 kb on + strand at 1642.970 kb on + strand at 1642.970 kb on + strand at 1642.970 kb on + strand at 1642.970 kb on + strand at 1642.978 kb on - strand at 1642.978 kb on - strand at 1643.037 kb on + strand at 1643.071 kb on + strand, within CCNA_01534 at 1643.076 kb on + strand, within CCNA_01534 at 1643.079 kb on - strand, within CCNA_01534 at 1643.198 kb on + strand, within CCNA_01534 at 1643.239 kb on - strand, within CCNA_01534 at 1643.274 kb on + strand, within CCNA_01534 at 1643.282 kb on - strand, within CCNA_01534 at 1643.305 kb on + strand, within CCNA_01534 at 1643.308 kb on - strand, within CCNA_01534 at 1643.308 kb on - strand, within CCNA_01534 at 1643.310 kb on + strand, within CCNA_01534 at 1643.343 kb on + strand, within CCNA_01534 at 1643.408 kb on - strand at 1643.421 kb on + strand at 1643.487 kb on + strand at 1643.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 1,641,370 + CCNA_01532 0.70 +0.8 1,641,387 + CCNA_01532 0.70 +1.0 1,641,402 + CCNA_01532 0.71 +1.4 1,641,410 - CCNA_01532 0.71 -1.4 1,641,410 - CCNA_01532 0.71 -1.3 1,641,454 + CCNA_01532 0.72 +1.8 1,641,494 + CCNA_01532 0.74 +1.1 1,641,494 + CCNA_01532 0.74 +2.1 1,641,494 + CCNA_01532 0.74 -0.1 1,641,494 + CCNA_01532 0.74 +0.6 1,641,502 - CCNA_01532 0.74 -1.1 1,641,502 - CCNA_01532 0.74 +0.2 1,641,516 + CCNA_01532 0.75 +0.6 1,641,524 - CCNA_01532 0.75 -1.3 1,641,524 - CCNA_01532 0.75 +0.8 1,641,561 - CCNA_01532 0.76 -0.6 1,641,584 - CCNA_01532 0.77 -2.0 1,641,607 + CCNA_01532 0.78 +1.2 1,641,607 + CCNA_01532 0.78 +1.6 1,641,607 + CCNA_01532 0.78 +1.1 1,641,634 + CCNA_01532 0.79 -1.0 1,641,652 - CCNA_01532 0.79 -1.5 1,641,698 - CCNA_01532 0.81 +1.4 1,641,718 - CCNA_01532 0.82 +0.4 1,641,773 + CCNA_01532 0.84 +0.1 1,641,781 - CCNA_01532 0.84 -1.4 1,641,784 + CCNA_01532 0.84 -0.2 1,641,803 + CCNA_01532 0.85 +4.0 1,641,811 - CCNA_01532 0.85 -0.2 1,641,900 + CCNA_01532 0.88 +2.2 1,641,917 + CCNA_01532 0.89 +1.3 1,641,936 - CCNA_01532 0.89 -1.3 1,641,959 + -0.4 1,641,967 - -1.1 1,641,988 - -0.2 1,642,033 - +0.1 1,642,041 + -0.4 1,642,086 - -1.1 1,642,089 + -1.2 1,642,119 + -0.4 1,642,119 + +0.1 1,642,173 + -0.8 1,642,173 + +0.6 1,642,181 - +0.1 1,642,205 + +0.7 1,642,213 - -0.3 1,642,223 - -0.4 1,642,256 - +0.8 1,642,308 - +2.4 1,642,308 - +0.4 1,642,366 + +1.2 1,642,366 + +0.7 1,642,366 + +1.4 1,642,366 + +1.4 1,642,366 + +1.8 1,642,366 + +1.8 1,642,441 + CCNA_01533 0.20 +0.5 1,642,471 - CCNA_01533 0.24 +0.1 1,642,487 + CCNA_01533 0.27 +2.2 1,642,495 + CCNA_01533 0.28 +1.1 1,642,503 - CCNA_01533 0.29 +2.4 1,642,532 + CCNA_01533 0.33 +1.7 1,642,550 - CCNA_01533 0.36 +4.0 1,642,584 + CCNA_01533 0.41 +2.6 1,642,605 - CCNA_01533 0.44 +0.4 1,642,634 + CCNA_01533 0.48 +1.9 1,642,639 + CCNA_01533 0.49 +2.4 1,642,642 - CCNA_01533 0.49 -1.3 1,642,706 - CCNA_01533 0.58 -0.9 1,642,799 + CCNA_01533 0.72 +2.2 1,642,799 + CCNA_01533 0.72 +2.3 1,642,799 + CCNA_01533 0.72 +1.6 1,642,804 + CCNA_01533 0.73 +1.6 1,642,814 + CCNA_01533 0.74 +1.9 1,642,832 - CCNA_01533 0.77 -0.2 1,642,864 + CCNA_01533 0.81 +1.7 1,642,866 + +0.4 1,642,873 - CCNA_01533 0.83 -1.8 1,642,957 - +0.1 1,642,970 + +1.0 1,642,970 + +0.7 1,642,970 + +3.0 1,642,970 + +1.9 1,642,970 + +1.4 1,642,978 - +0.4 1,642,978 - -1.2 1,643,037 + +0.8 1,643,071 + CCNA_01534 0.15 +0.9 1,643,076 + CCNA_01534 0.17 +0.8 1,643,079 - CCNA_01534 0.17 +0.1 1,643,198 + CCNA_01534 0.47 +1.2 1,643,239 - CCNA_01534 0.57 +0.4 1,643,274 + CCNA_01534 0.66 +1.0 1,643,282 - CCNA_01534 0.68 -0.6 1,643,305 + CCNA_01534 0.74 +0.5 1,643,308 - CCNA_01534 0.75 +0.1 1,643,308 - CCNA_01534 0.75 +0.8 1,643,310 + CCNA_01534 0.75 +0.7 1,643,343 + CCNA_01534 0.83 +0.5 1,643,408 - -0.9 1,643,421 + +2.2 1,643,487 + +1.5 1,643,655 + +1.3
Or see this region's nucleotide sequence