Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01363

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01361 and CCNA_01362 overlap by 4 nucleotidesCCNA_01362 and CCNA_01363 overlap by 4 nucleotidesCCNA_01363 and CCNA_01364 are separated by 230 nucleotides CCNA_01361: CCNA_01361 - PepSY superfamily protein, at 1,477,574 to 1,477,915 _01361 CCNA_01362: CCNA_01362 - two-component response regulator, at 1,477,912 to 1,478,580 _01362 CCNA_01363: CCNA_01363 - two-component sensor histidine kinase, at 1,478,577 to 1,479,935 _01363 CCNA_01364: CCNA_01364 - NIFR3-like protein, at 1,480,166 to 1,481,191 _01364 Position (kb) 1478 1479 1480Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1477.577 kb on + strandat 1477.662 kb on + strand, within CCNA_01361at 1477.780 kb on + strand, within CCNA_01361at 1477.793 kb on - strand, within CCNA_01361at 1477.801 kb on + strand, within CCNA_01361at 1477.892 kb on + strandat 1477.892 kb on + strandat 1477.909 kb on + strandat 1477.951 kb on + strandat 1477.951 kb on + strandat 1478.025 kb on + strand, within CCNA_01362at 1478.033 kb on - strand, within CCNA_01362at 1478.038 kb on + strand, within CCNA_01362at 1478.175 kb on + strand, within CCNA_01362at 1478.183 kb on - strand, within CCNA_01362at 1478.202 kb on + strand, within CCNA_01362at 1478.275 kb on - strand, within CCNA_01362at 1478.283 kb on - strand, within CCNA_01362at 1478.287 kb on + strand, within CCNA_01362at 1478.333 kb on + strand, within CCNA_01362at 1478.333 kb on - strand, within CCNA_01362at 1478.338 kb on + strand, within CCNA_01362at 1478.338 kb on + strand, within CCNA_01362at 1478.338 kb on + strand, within CCNA_01362at 1478.338 kb on + strand, within CCNA_01362at 1478.346 kb on - strand, within CCNA_01362at 1478.405 kb on + strand, within CCNA_01362at 1478.443 kb on + strand, within CCNA_01362at 1478.445 kb on + strand, within CCNA_01362at 1478.445 kb on + strand, within CCNA_01362at 1478.445 kb on + strand, within CCNA_01362at 1478.445 kb on + strand, within CCNA_01362at 1478.445 kb on + strand, within CCNA_01362at 1478.445 kb on + strand, within CCNA_01362at 1478.445 kb on + strand, within CCNA_01362at 1478.445 kb on + strand, within CCNA_01362at 1478.445 kb on + strand, within CCNA_01362at 1478.453 kb on - strand, within CCNA_01362at 1478.453 kb on - strand, within CCNA_01362at 1478.453 kb on - strand, within CCNA_01362at 1478.453 kb on - strand, within CCNA_01362at 1478.453 kb on - strand, within CCNA_01362at 1478.480 kb on - strand, within CCNA_01362at 1478.514 kb on + strandat 1478.530 kb on + strandat 1478.545 kb on + strandat 1478.545 kb on + strandat 1478.553 kb on - strandat 1478.594 kb on - strandat 1478.709 kb on - strandat 1478.709 kb on - strandat 1478.721 kb on + strand, within CCNA_01363at 1478.729 kb on - strand, within CCNA_01363at 1478.729 kb on - strand, within CCNA_01363at 1478.729 kb on - strand, within CCNA_01363at 1478.789 kb on - strand, within CCNA_01363at 1478.841 kb on + strand, within CCNA_01363at 1478.907 kb on + strand, within CCNA_01363at 1478.915 kb on - strand, within CCNA_01363at 1478.972 kb on - strand, within CCNA_01363at 1478.982 kb on - strand, within CCNA_01363at 1479.081 kb on - strand, within CCNA_01363at 1479.088 kb on + strand, within CCNA_01363at 1479.126 kb on + strand, within CCNA_01363at 1479.144 kb on + strand, within CCNA_01363at 1479.144 kb on + strand, within CCNA_01363at 1479.144 kb on + strand, within CCNA_01363at 1479.144 kb on + strand, within CCNA_01363at 1479.144 kb on + strand, within CCNA_01363at 1479.144 kb on + strand, within CCNA_01363at 1479.152 kb on - strand, within CCNA_01363at 1479.152 kb on - strand, within CCNA_01363at 1479.152 kb on - strand, within CCNA_01363at 1479.173 kb on - strand, within CCNA_01363at 1479.174 kb on + strand, within CCNA_01363at 1479.276 kb on + strand, within CCNA_01363at 1479.276 kb on + strand, within CCNA_01363at 1479.276 kb on + strand, within CCNA_01363at 1479.284 kb on - strand, within CCNA_01363at 1479.284 kb on - strand, within CCNA_01363at 1479.284 kb on - strand, within CCNA_01363at 1479.284 kb on - strand, within CCNA_01363at 1479.284 kb on - strand, within CCNA_01363at 1479.284 kb on - strand, within CCNA_01363at 1479.356 kb on - strand, within CCNA_01363at 1479.366 kb on + strand, within CCNA_01363at 1479.396 kb on + strand, within CCNA_01363at 1479.439 kb on - strand, within CCNA_01363at 1479.441 kb on + strand, within CCNA_01363at 1479.501 kb on + strand, within CCNA_01363at 1479.501 kb on + strand, within CCNA_01363at 1479.506 kb on + strand, within CCNA_01363at 1479.547 kb on + strand, within CCNA_01363at 1479.691 kb on + strand, within CCNA_01363at 1479.706 kb on + strand, within CCNA_01363at 1479.706 kb on + strand, within CCNA_01363at 1479.706 kb on + strand, within CCNA_01363at 1479.711 kb on + strand, within CCNA_01363at 1479.719 kb on - strand, within CCNA_01363at 1479.738 kb on + strand, within CCNA_01363at 1479.741 kb on - strand, within CCNA_01363at 1479.741 kb on - strand, within CCNA_01363at 1479.744 kb on + strand, within CCNA_01363at 1479.744 kb on + strand, within CCNA_01363at 1479.746 kb on - strand, within CCNA_01363at 1479.754 kb on + strand, within CCNA_01363at 1479.786 kb on - strand, within CCNA_01363at 1479.792 kb on - strand, within CCNA_01363at 1479.799 kb on + strand, within CCNA_01363at 1479.810 kb on + strandat 1479.811 kb on + strandat 1479.811 kb on + strandat 1479.811 kb on + strandat 1479.818 kb on - strandat 1479.819 kb on - strandat 1479.819 kb on - strandat 1479.845 kb on + strandat 1479.858 kb on + strandat 1479.866 kb on - strandat 1479.879 kb on + strandat 1479.887 kb on - strandat 1479.887 kb on - strandat 1479.905 kb on + strandat 1479.905 kb on + strandat 1479.913 kb on - strandat 1479.917 kb on + strandat 1479.925 kb on - strandat 1479.936 kb on - strandat 1479.937 kb on + strandat 1479.992 kb on + strandat 1479.992 kb on + strandat 1480.001 kb on + strandat 1480.009 kb on + strandat 1480.049 kb on + strandat 1480.049 kb on + strandat 1480.068 kb on - strandat 1480.068 kb on - strandat 1480.083 kb on - strandat 1480.098 kb on + strandat 1480.099 kb on + strandat 1480.099 kb on + strandat 1480.107 kb on - strandat 1480.107 kb on - strandat 1480.144 kb on - strandat 1480.146 kb on + strandat 1480.147 kb on + strandat 1480.154 kb on - strandat 1480.154 kb on - strandat 1480.224 kb on + strandat 1480.237 kb on - strandat 1480.245 kb on - strandat 1480.261 kb on + strandat 1480.276 kb on + strand, within CCNA_01364at 1480.276 kb on + strandat 1480.276 kb on + strand, within CCNA_01364at 1480.276 kb on + strand, within CCNA_01364at 1480.276 kb on + strand, within CCNA_01364at 1480.276 kb on + strand, within CCNA_01364at 1480.276 kb on + strand, within CCNA_01364at 1480.276 kb on + strand, within CCNA_01364at 1480.281 kb on + strand, within CCNA_01364at 1480.284 kb on - strand, within CCNA_01364at 1480.284 kb on - strand, within CCNA_01364at 1480.284 kb on - strand, within CCNA_01364at 1480.284 kb on - strand, within CCNA_01364at 1480.284 kb on - strand, within CCNA_01364at 1480.284 kb on - strand, within CCNA_01364at 1480.284 kb on - strand, within CCNA_01364at 1480.302 kb on + strand, within CCNA_01364at 1480.302 kb on + strand, within CCNA_01364at 1480.310 kb on + strand, within CCNA_01364at 1480.338 kb on + strand, within CCNA_01364at 1480.338 kb on + strand, within CCNA_01364at 1480.338 kb on + strand, within CCNA_01364at 1480.338 kb on + strand, within CCNA_01364at 1480.338 kb on + strand, within CCNA_01364at 1480.344 kb on + strand, within CCNA_01364at 1480.346 kb on - strand, within CCNA_01364at 1480.346 kb on - strand, within CCNA_01364at 1480.346 kb on - strand, within CCNA_01364at 1480.346 kb on - strand, within CCNA_01364at 1480.346 kb on - strand, within CCNA_01364at 1480.388 kb on - strand, within CCNA_01364at 1480.439 kb on - strand, within CCNA_01364at 1480.447 kb on + strand, within CCNA_01364at 1480.474 kb on + strand, within CCNA_01364at 1480.520 kb on - strand, within CCNA_01364at 1480.520 kb on - strand, within CCNA_01364at 1480.533 kb on + strand, within CCNA_01364at 1480.620 kb on + strand, within CCNA_01364at 1480.654 kb on + strand, within CCNA_01364at 1480.662 kb on + strand, within CCNA_01364at 1480.662 kb on - strand, within CCNA_01364at 1480.691 kb on - strand, within CCNA_01364at 1480.747 kb on + strand, within CCNA_01364at 1480.747 kb on + strand, within CCNA_01364at 1480.747 kb on + strand, within CCNA_01364at 1480.755 kb on - strand, within CCNA_01364at 1480.775 kb on + strand, within CCNA_01364at 1480.783 kb on - strand, within CCNA_01364at 1480.783 kb on - strand, within CCNA_01364at 1480.783 kb on - strand, within CCNA_01364at 1480.783 kb on - strand, within CCNA_01364at 1480.783 kb on - strand, within CCNA_01364at 1480.800 kb on - strand, within CCNA_01364at 1480.807 kb on - strand, within CCNA_01364at 1480.812 kb on - strand, within CCNA_01364at 1480.828 kb on - strand, within CCNA_01364at 1480.834 kb on + strand, within CCNA_01364at 1480.834 kb on + strand, within CCNA_01364at 1480.849 kb on - strand, within CCNA_01364at 1480.851 kb on + strand, within CCNA_01364at 1480.914 kb on + strand, within CCNA_01364

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
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1,477,577 + -1.7
1,477,662 + CCNA_01361 0.26 +3.3
1,477,780 + CCNA_01361 0.60 +3.5
1,477,793 - CCNA_01361 0.64 +0.0
1,477,801 + CCNA_01361 0.66 +3.1
1,477,892 + +2.0
1,477,892 + +1.6
1,477,909 + +1.3
1,477,951 + +1.3
1,477,951 + -0.6
1,478,025 + CCNA_01362 0.17 -0.9
1,478,033 - CCNA_01362 0.18 +0.3
1,478,038 + CCNA_01362 0.19 -0.5
1,478,175 + CCNA_01362 0.39 +2.3
1,478,183 - CCNA_01362 0.41 +0.3
1,478,202 + CCNA_01362 0.43 -1.5
1,478,275 - CCNA_01362 0.54 -0.4
1,478,283 - CCNA_01362 0.55 -2.1
1,478,287 + CCNA_01362 0.56 -0.1
1,478,333 + CCNA_01362 0.63 -0.3
1,478,333 - CCNA_01362 0.63 +1.6
1,478,338 + CCNA_01362 0.64 +0.0
1,478,338 + CCNA_01362 0.64 -0.5
1,478,338 + CCNA_01362 0.64 +0.2
1,478,338 + CCNA_01362 0.64 -0.8
1,478,346 - CCNA_01362 0.65 +1.0
1,478,405 + CCNA_01362 0.74 +0.0
1,478,443 + CCNA_01362 0.79 -0.3
1,478,445 + CCNA_01362 0.80 -0.7
1,478,445 + CCNA_01362 0.80 +0.4
1,478,445 + CCNA_01362 0.80 +1.3
1,478,445 + CCNA_01362 0.80 +0.2
1,478,445 + CCNA_01362 0.80 +2.1
1,478,445 + CCNA_01362 0.80 -0.3
1,478,445 + CCNA_01362 0.80 +0.7
1,478,445 + CCNA_01362 0.80 +0.3
1,478,445 + CCNA_01362 0.80 +0.7
1,478,453 - CCNA_01362 0.81 -0.1
1,478,453 - CCNA_01362 0.81 -1.5
1,478,453 - CCNA_01362 0.81 +0.3
1,478,453 - CCNA_01362 0.81 +0.3
1,478,453 - CCNA_01362 0.81 +0.2
1,478,480 - CCNA_01362 0.85 +0.6
1,478,514 + +0.2
1,478,530 + -0.3
1,478,545 + -0.1
1,478,545 + +0.0
1,478,553 - +0.7
1,478,594 - -1.3
1,478,709 - +0.0
1,478,709 - -1.1
1,478,721 + CCNA_01363 0.11 -0.4
1,478,729 - CCNA_01363 0.11 -0.1
1,478,729 - CCNA_01363 0.11 +0.0
1,478,729 - CCNA_01363 0.11 +0.0
1,478,789 - CCNA_01363 0.16 +0.3
1,478,841 + CCNA_01363 0.19 -0.7
1,478,907 + CCNA_01363 0.24 +3.3
1,478,915 - CCNA_01363 0.25 -0.5
1,478,972 - CCNA_01363 0.29 +2.3
1,478,982 - CCNA_01363 0.30 +0.3
1,479,081 - CCNA_01363 0.37 +1.3
1,479,088 + CCNA_01363 0.38 -0.8
1,479,126 + CCNA_01363 0.40 +2.7
1,479,144 + CCNA_01363 0.42 +1.3
1,479,144 + CCNA_01363 0.42 -2.6
1,479,144 + CCNA_01363 0.42 -0.1
1,479,144 + CCNA_01363 0.42 +1.3
1,479,144 + CCNA_01363 0.42 -0.7
1,479,144 + CCNA_01363 0.42 +0.2
1,479,152 - CCNA_01363 0.42 -0.2
1,479,152 - CCNA_01363 0.42 +0.3
1,479,152 - CCNA_01363 0.42 +0.3
1,479,173 - CCNA_01363 0.44 +1.8
1,479,174 + CCNA_01363 0.44 +0.9
1,479,276 + CCNA_01363 0.51 +0.0
1,479,276 + CCNA_01363 0.51 +1.9
1,479,276 + CCNA_01363 0.51 -1.7
1,479,284 - CCNA_01363 0.52 -0.5
1,479,284 - CCNA_01363 0.52 -0.1
1,479,284 - CCNA_01363 0.52 -1.8
1,479,284 - CCNA_01363 0.52 -1.5
1,479,284 - CCNA_01363 0.52 +0.8
1,479,284 - CCNA_01363 0.52 +0.0
1,479,356 - CCNA_01363 0.57 +0.8
1,479,366 + CCNA_01363 0.58 -0.7
1,479,396 + CCNA_01363 0.60 +0.2
1,479,439 - CCNA_01363 0.63 -0.1
1,479,441 + CCNA_01363 0.64 +1.3
1,479,501 + CCNA_01363 0.68 +0.8
1,479,501 + CCNA_01363 0.68 +1.3
1,479,506 + CCNA_01363 0.68 +0.0
1,479,547 + CCNA_01363 0.71 +0.0
1,479,691 + CCNA_01363 0.82 +0.4
1,479,706 + CCNA_01363 0.83 -0.7
1,479,706 + CCNA_01363 0.83 +1.3
1,479,706 + CCNA_01363 0.83 -2.1
1,479,711 + CCNA_01363 0.83 -1.8
1,479,719 - CCNA_01363 0.84 -1.1
1,479,738 + CCNA_01363 0.85 +1.8
1,479,741 - CCNA_01363 0.86 +1.0
1,479,741 - CCNA_01363 0.86 -1.6
1,479,744 + CCNA_01363 0.86 +0.3
1,479,744 + CCNA_01363 0.86 +0.3
1,479,746 - CCNA_01363 0.86 +0.0
1,479,754 + CCNA_01363 0.87 -0.1
1,479,786 - CCNA_01363 0.89 +0.1
1,479,792 - CCNA_01363 0.89 +0.8
1,479,799 + CCNA_01363 0.90 +0.0
1,479,810 + -0.6
1,479,811 + -1.9
1,479,811 + +0.0
1,479,811 + +0.0
1,479,818 - -1.1
1,479,819 - +0.6
1,479,819 - -1.4
1,479,845 + +0.6
1,479,858 + -0.5
1,479,866 - +0.9
1,479,879 + -0.2
1,479,887 - -0.8
1,479,887 - +0.3
1,479,905 + +2.3
1,479,905 + +0.2
1,479,913 - -1.5
1,479,917 + -1.1
1,479,925 - -1.1
1,479,936 - -1.1
1,479,937 + -0.9
1,479,992 + +0.4
1,479,992 + +0.4
1,480,001 + -1.1
1,480,009 + +0.4
1,480,049 + -1.0
1,480,049 + -0.3
1,480,068 - -0.8
1,480,068 - +0.8
1,480,083 - +0.4
1,480,098 + +0.4
1,480,099 + -2.0
1,480,099 + -0.6
1,480,107 - +3.4
1,480,107 - +0.8
1,480,144 - +0.7
1,480,146 + -0.3
1,480,147 + -0.2
1,480,154 - +1.8
1,480,154 - -1.9
1,480,224 + +0.9
1,480,237 - +0.6
1,480,245 - +1.4
1,480,261 + +0.0
1,480,276 + CCNA_01364 0.11 +0.4
1,480,276 + +1.4
1,480,276 + CCNA_01364 0.11 +0.0
1,480,276 + CCNA_01364 0.11 -0.1
1,480,276 + CCNA_01364 0.11 +2.4
1,480,276 + CCNA_01364 0.11 -0.2
1,480,276 + CCNA_01364 0.11 -1.0
1,480,276 + CCNA_01364 0.11 +0.4
1,480,281 + CCNA_01364 0.11 +3.9
1,480,284 - CCNA_01364 0.12 -1.1
1,480,284 - CCNA_01364 0.12 +0.6
1,480,284 - CCNA_01364 0.12 +0.4
1,480,284 - CCNA_01364 0.12 +1.4
1,480,284 - CCNA_01364 0.12 +2.0
1,480,284 - CCNA_01364 0.12 +2.4
1,480,284 - CCNA_01364 0.12 +0.9
1,480,302 + CCNA_01364 0.13 -0.8
1,480,302 + CCNA_01364 0.13 +1.6
1,480,310 + CCNA_01364 0.14 -1.2
1,480,338 + CCNA_01364 0.17 +0.7
1,480,338 + CCNA_01364 0.17 -1.2
1,480,338 + CCNA_01364 0.17 -0.6
1,480,338 + CCNA_01364 0.17 -0.2
1,480,338 + CCNA_01364 0.17 -0.2
1,480,344 + CCNA_01364 0.17 +0.4
1,480,346 - CCNA_01364 0.18 +0.0
1,480,346 - CCNA_01364 0.18 +3.4
1,480,346 - CCNA_01364 0.18 -1.7
1,480,346 - CCNA_01364 0.18 -1.2
1,480,346 - CCNA_01364 0.18 -1.6
1,480,388 - CCNA_01364 0.22 -0.2
1,480,439 - CCNA_01364 0.27 -1.5
1,480,447 + CCNA_01364 0.27 -1.7
1,480,474 + CCNA_01364 0.30 -2.4
1,480,520 - CCNA_01364 0.35 -0.6
1,480,520 - CCNA_01364 0.35 -1.0
1,480,533 + CCNA_01364 0.36 -0.1
1,480,620 + CCNA_01364 0.44 -0.0
1,480,654 + CCNA_01364 0.48 -1.2
1,480,662 + CCNA_01364 0.48 +1.1
1,480,662 - CCNA_01364 0.48 +2.4
1,480,691 - CCNA_01364 0.51 -0.8
1,480,747 + CCNA_01364 0.57 +1.1
1,480,747 + CCNA_01364 0.57 -1.1
1,480,747 + CCNA_01364 0.57 +1.1
1,480,755 - CCNA_01364 0.57 +0.4
1,480,775 + CCNA_01364 0.59 +0.8
1,480,783 - CCNA_01364 0.60 +0.0
1,480,783 - CCNA_01364 0.60 +0.4
1,480,783 - CCNA_01364 0.60 -0.2
1,480,783 - CCNA_01364 0.60 -0.2
1,480,783 - CCNA_01364 0.60 +1.4
1,480,800 - CCNA_01364 0.62 +1.6
1,480,807 - CCNA_01364 0.62 +0.0
1,480,812 - CCNA_01364 0.63 -1.0
1,480,828 - CCNA_01364 0.65 +0.4
1,480,834 + CCNA_01364 0.65 +1.7
1,480,834 + CCNA_01364 0.65 +0.6
1,480,849 - CCNA_01364 0.67 -0.5
1,480,851 + CCNA_01364 0.67 +1.4
1,480,914 + CCNA_01364 0.73 -1.1

Or see this region's nucleotide sequence