Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01340

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Dimethyl Sulfoxide 7.5 vol%
1,452,117	+		CCNA_01338	0.69	+2.3
1,452,120	+		CCNA_01338	0.70	+2.3
1,452,122	+		CCNA_01338	0.70	-0.2
1,452,137	+		CCNA_01338	0.73	+1.1
1,452,139	+		CCNA_01338	0.74	+1.1
1,452,167	+		CCNA_01338	0.80	+0.8
1,452,167	+		CCNA_01338	0.80	+0.9
1,452,167	+		CCNA_01338	0.80	+1.8
1,452,167	+		CCNA_01338	0.80	+0.0
1,452,167	+		CCNA_01338	0.80	+2.0
1,452,167	+		CCNA_01338	0.80	-0.4
1,452,175	-		CCNA_01338	0.82	-0.9
1,452,177	+		CCNA_01338	0.82	+3.2
1,452,196	-		CCNA_01338	0.86	-2.7
1,452,254	-				-1.1
1,452,263	+				+2.7
1,452,263	+				+3.0
1,452,263	+				+3.1
1,452,271	-				+0.3
1,452,271	-				+0.7
1,452,284	+				+2.3
1,452,368	+		CCNA_01339	0.35	+2.1
1,452,368	+		CCNA_01339	0.35	+1.9
1,452,390	+		CCNA_01339	0.41	+1.5
1,452,405	+		CCNA_01339	0.46	+1.9
1,452,424	+		CCNA_01339	0.52	+2.4
1,452,425	+		CCNA_01339	0.52	+2.8
1,452,428	+		CCNA_01339	0.53	+3.3
1,452,433	+		CCNA_01339	0.54	+2.4
1,452,446	+		CCNA_01339	0.58	+2.7
1,452,471	-		CCNA_01339	0.66	+1.3
1,452,496	+		CCNA_01339	0.73	+2.7
1,452,504	-				+1.3
1,452,508	+		CCNA_01339	0.77	+1.3
1,452,516	-		CCNA_01339	0.79	-2.3
1,452,526	+		CCNA_01339	0.82	-2.1
1,452,541	+		CCNA_01339	0.87	-0.1
1,452,541	+		CCNA_01339	0.87	-0.5
1,452,549	-		CCNA_01339	0.89	-1.9
1,452,568	+				+1.6
1,452,576	-				-0.7
1,452,593	-				-0.1
1,452,628	+				-0.1
1,452,628	+				-0.3
1,452,636	-		CCNA_03880	0.11	-0.5
1,452,697	-		CCNA_03880	0.24	-0.9
1,452,719	+		CCNA_03880	0.28	-0.2
1,452,738	+		CCNA_03880	0.32	-0.2
1,452,744	+		CCNA_03880	0.33	+0.3
1,452,785	+		CCNA_03880	0.41	-1.8
1,452,788	+		CCNA_03880	0.42	+0.3
1,452,823	+		CCNA_03880	0.49	+0.8
1,452,846	+				+1.3
1,452,854	-		CCNA_03880	0.55	-0.3
1,452,886	+		CCNA_03880	0.62	+0.5
1,452,902	+		CCNA_03880	0.65	-0.1
1,452,910	-		CCNA_03880	0.67	+1.3
1,452,949	+		CCNA_03880	0.75	-0.8
1,452,950	-		CCNA_03880	0.75	+0.3
1,452,955	+		CCNA_03880	0.76	+0.1
1,453,005	+		CCNA_03880	0.86	-1.5
1,453,006	+		CCNA_03880	0.86	-1.1
1,453,029	+				+0.3
1,453,029	+				+1.3
1,453,029	+				+1.3
1,453,029	+				-0.1
1,453,029	+				-0.1
1,453,037	-				+0.3
1,453,037	-				-0.1
1,453,037	-				-1.5
1,453,043	+				+1.6
1,453,043	+				+2.1
1,453,051	-				+0.7
1,453,051	-				+1.3
1,453,056	-				-0.7
1,453,068	+				+0.1
1,453,071	-				-1.2
1,453,076	-				-0.1
1,453,076	-				+1.3
1,453,102	+				+0.3
1,453,151	-				+0.7
1,453,158	-				-1.7
1,453,164	-				-0.7
1,453,178	-				-0.3
1,453,224	+		CCNA_01340	0.12	-1.3
1,453,303	+		CCNA_01340	0.19	+1.4
1,453,369	+		CCNA_01340	0.24	+1.3
1,453,382	+		CCNA_01340	0.25	+0.7
1,453,392	-		CCNA_01340	0.26	-0.5
1,453,478	+		CCNA_01340	0.33	+2.3
1,453,498	-		CCNA_01340	0.34	-0.9
1,453,505	-		CCNA_01340	0.35	+0.7
1,453,505	-		CCNA_01340	0.35	+2.3
1,453,514	+		CCNA_01340	0.35	+0.9
1,453,594	+		CCNA_01340	0.42	+0.4
1,453,597	-		CCNA_01340	0.42	+0.7
1,453,599	+		CCNA_01340	0.42	+0.1
1,453,599	+		CCNA_01340	0.42	-0.1
1,453,599	+		CCNA_01340	0.42	+0.9
1,453,599	+		CCNA_01340	0.42	+1.3
1,453,599	+		CCNA_01340	0.42	+0.3
1,453,599	+		CCNA_01340	0.42	+0.1
1,453,599	+		CCNA_01340	0.42	-0.7
1,453,599	+		CCNA_01340	0.42	-0.6
1,453,599	+		CCNA_01340	0.42	-1.3
1,453,602	-		CCNA_01340	0.42	-0.7
1,453,607	-		CCNA_01340	0.43	-0.7
1,453,607	-		CCNA_01340	0.43	-0.7
1,453,685	+		CCNA_01340	0.49	+0.5
1,453,690	+		CCNA_01340	0.49	-0.1
1,453,803	+		CCNA_01340	0.59	-0.9
1,453,803	+		CCNA_01340	0.59	-2.1
1,453,808	+		CCNA_01340	0.59	+0.3
1,453,823	-		CCNA_01340	0.60	-1.9
1,453,835	-		CCNA_01340	0.61	-0.5
1,453,835	-		CCNA_01340	0.61	-0.3
1,453,855	+		CCNA_01340	0.63	+0.5
1,453,857	-		CCNA_01340	0.63	-1.3
1,453,906	+		CCNA_01340	0.67	-2.0
1,453,914	-		CCNA_01340	0.67	-1.9
1,453,941	+		CCNA_01340	0.70	+1.3
1,453,980	+		CCNA_01340	0.73	-0.2
1,454,017	-		CCNA_01340	0.76	+0.7
1,454,052	-		CCNA_01340	0.78	-1.3
1,454,061	-		CCNA_01340	0.79	-1.1
1,454,079	+		CCNA_01340	0.81	-0.3
1,454,205	+				+0.7
1,454,213	-				-1.3
1,454,244	+				-1.6
1,454,244	+				-0.0
1,454,244	+				-0.5
1,454,252	-				+0.7
1,454,273	-				-0.3
1,454,282	+				+1.0
1,454,290	-				-3.1
1,454,290	-				-2.3
1,454,293	+				+1.7
1,454,324	+				+3.3
1,454,343	-				+0.7
1,454,357	+				+0.8
1,454,357	+				-0.5
1,454,358	+				+0.3
1,454,358	+				+1.3
1,454,358	+				+0.0
1,454,358	+				+0.5
1,454,358	+				-1.3
1,454,358	+				+0.0
1,454,358	+				+0.7
1,454,366	-				-0.7
1,454,366	-				+2.3
1,454,377	-				-0.9
1,454,377	-				-0.5
1,454,394	-				+0.5
1,454,469	-				-0.9
1,454,472	+				+1.4
1,454,472	+				+0.1
1,454,477	+				+1.3
1,454,526	-				+1.3
1,454,625	+		CCNA_01341	0.15	+0.8
1,454,630	+		CCNA_01341	0.15	+0.4
1,454,650	+		CCNA_01341	0.17	+0.8
1,454,690	+		CCNA_01341	0.19	+0.7
1,454,722	+		CCNA_01341	0.22	+0.9
1,454,753	-		CCNA_01341	0.24	-1.6
1,454,755	+		CCNA_01341	0.24	+0.1
1,454,836	+		CCNA_01341	0.30	+3.0
1,454,844	-		CCNA_01341	0.30	-0.2
1,454,890	+		CCNA_01341	0.34	+1.4
1,454,956	+		CCNA_01341	0.38	-0.7
1,454,961	+		CCNA_01341	0.39	+2.8
1,454,966	+		CCNA_01341	0.39	+2.0
1,454,966	+		CCNA_01341	0.39	+0.9
1,454,966	+		CCNA_01341	0.39	+2.0
1,454,966	+		CCNA_01341	0.39	+0.7
1,454,966	+		CCNA_01341	0.39	+0.6
1,454,974	-		CCNA_01341	0.39	+1.3
1,454,974	-		CCNA_01341	0.39	-0.3
1,454,974	-		CCNA_01341	0.39	-1.2
1,455,048	-		CCNA_01341	0.45	-0.5
1,455,116	+		CCNA_01341	0.49	+1.4
1,455,155	+		CCNA_01341	0.52	+1.0
1,455,211	+		CCNA_01341	0.56	-0.7
1,455,216	-		CCNA_01341	0.57	-1.8
1,455,253	+		CCNA_01341	0.59	+0.6
1,455,262	-		CCNA_01341	0.60	-0.3
1,455,320	+		CCNA_01341	0.64	+1.8
1,455,320	+		CCNA_01341	0.64	+2.7