Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00804 and CCNA_00805 are separated by 229 nucleotides CCNA_00805 and CCNA_00806 overlap by 1 nucleotides CCNA_00806 and CCNA_00807 are separated by 7 nucleotides CCNA_00807 and CCNA_00808 are separated by 93 nucleotides CCNA_00808 and CCNA_00809 are separated by 279 nucleotides
CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859
_00804
CCNA_00805: CCNA_00805 - GTP-binding protein YihA, at 869,089 to 869,778
_00805
CCNA_00806: CCNA_00806 - inner membrane protein translocase component yidC, at 869,778 to 871,625
_00806
CCNA_00807: CCNA_00807 - ribonuclease P protein component, at 871,633 to 872,082
_00807
CCNA_00808: CCNA_00808 - LSU ribosomal protein L34P, at 872,176 to 872,310
_00808
CCNA_00809: CCNA_00809 - quinone oxidoreductase, at 872,590 to 873,585
_00809
Position (kb)
869
870
871
872 Strain fitness (log2 ratio)
-1
0
1
2 at 868.797 kb on + strand, within CCNA_00804 at 868.797 kb on + strand, within CCNA_00804 at 868.797 kb on + strand, within CCNA_00804 at 868.805 kb on - strand, within CCNA_00804 at 868.836 kb on + strand at 868.847 kb on - strand at 868.900 kb on + strand at 868.917 kb on - strand at 868.987 kb on + strand at 868.990 kb on - strand at 868.992 kb on + strand at 868.995 kb on + strand at 869.004 kb on - strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.009 kb on + strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.017 kb on - strand at 869.107 kb on - strand at 869.696 kb on + strand, within CCNA_00805 at 869.704 kb on - strand, within CCNA_00805 at 869.758 kb on - strand at 869.830 kb on - strand at 869.847 kb on - strand at 871.683 kb on - strand, within CCNA_00807 at 871.762 kb on - strand, within CCNA_00807 at 871.762 kb on - strand, within CCNA_00807 at 872.398 kb on + strand at 872.417 kb on + strand at 872.424 kb on - strand at 872.424 kb on - strand at 872.425 kb on - strand at 872.425 kb on - strand at 872.425 kb on - strand at 872.425 kb on - strand at 872.425 kb on - strand at 872.425 kb on - strand at 872.435 kb on + strand at 872.435 kb on + strand at 872.443 kb on - strand at 872.473 kb on + strand at 872.478 kb on + strand at 872.502 kb on + strand at 872.526 kb on - strand at 872.567 kb on + strand at 872.614 kb on - strand at 872.614 kb on - strand at 872.618 kb on + strand at 872.619 kb on - strand at 872.619 kb on - strand at 872.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 868,797 + CCNA_00804 0.87 +0.8 868,797 + CCNA_00804 0.87 -0.1 868,797 + CCNA_00804 0.87 +0.5 868,805 - CCNA_00804 0.89 -0.1 868,836 + -1.2 868,847 - +0.6 868,900 + +1.0 868,917 - +2.6 868,987 + +0.2 868,990 - -0.5 868,992 + -0.7 868,995 + +2.5 869,004 - +1.0 869,009 + -0.2 869,009 + -1.7 869,009 + +1.0 869,009 + +0.5 869,009 + -0.8 869,009 + +0.6 869,009 + +0.5 869,017 - +2.3 869,017 - +2.5 869,017 - +1.3 869,017 - +0.9 869,107 - +2.6 869,696 + CCNA_00805 0.88 -0.2 869,704 - CCNA_00805 0.89 +1.9 869,758 - +2.4 869,830 - +2.4 869,847 - +2.7 871,683 - CCNA_00807 0.11 +0.8 871,762 - CCNA_00807 0.29 +1.9 871,762 - CCNA_00807 0.29 +2.0 872,398 + -0.4 872,417 + +0.5 872,424 - -1.0 872,424 - -1.7 872,425 - +0.0 872,425 - -0.7 872,425 - -1.4 872,425 - +1.3 872,425 - +2.3 872,425 - +2.3 872,435 + +0.0 872,435 + +0.8 872,443 - +2.3 872,473 + +0.0 872,478 + +2.3 872,502 + +0.0 872,526 - +1.9 872,567 + +2.3 872,614 - -0.4 872,614 - +0.4 872,618 + -0.2 872,619 - +0.3 872,619 - +0.1 872,624 - +1.0
Or see this region's nucleotide sequence