Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00752 and CCNA_00753 are separated by 137 nucleotides CCNA_00753 and CCNA_00754 are separated by 157 nucleotides
CCNA_00752: CCNA_00752 - 3-hydroxybutyryl-CoA dehydrogenase, at 810,384 to 811,262
_00752
CCNA_00753: CCNA_00753 - lysine 2,3-aminomutase, at 811,400 to 812,437
_00753
CCNA_00754: CCNA_00754 - Nodulin-21 / CCC1-related protein, at 812,595 to 813,296
_00754
Position (kb) 811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 810.466 kb on + strand at 810.504 kb on + strand, within CCNA_00752 at 810.511 kb on + strand, within CCNA_00752 at 810.511 kb on + strand, within CCNA_00752 at 810.546 kb on + strand, within CCNA_00752 at 810.546 kb on + strand, within CCNA_00752 at 810.554 kb on - strand, within CCNA_00752 at 810.554 kb on - strand, within CCNA_00752 at 810.554 kb on - strand, within CCNA_00752 at 810.554 kb on - strand, within CCNA_00752 at 810.572 kb on - strand, within CCNA_00752 at 810.577 kb on - strand, within CCNA_00752 at 810.577 kb on - strand, within CCNA_00752 at 810.590 kb on + strand at 810.631 kb on + strand, within CCNA_00752 at 810.640 kb on + strand, within CCNA_00752 at 810.648 kb on - strand, within CCNA_00752 at 810.650 kb on + strand, within CCNA_00752 at 810.652 kb on + strand, within CCNA_00752 at 810.652 kb on + strand, within CCNA_00752 at 810.660 kb on - strand, within CCNA_00752 at 810.721 kb on - strand, within CCNA_00752 at 810.771 kb on + strand, within CCNA_00752 at 810.779 kb on - strand, within CCNA_00752 at 810.802 kb on + strand, within CCNA_00752 at 810.811 kb on + strand, within CCNA_00752 at 810.819 kb on - strand, within CCNA_00752 at 810.832 kb on - strand, within CCNA_00752 at 810.887 kb on + strand, within CCNA_00752 at 810.937 kb on + strand, within CCNA_00752 at 810.939 kb on - strand, within CCNA_00752 at 810.952 kb on - strand, within CCNA_00752 at 810.952 kb on - strand, within CCNA_00752 at 810.952 kb on - strand, within CCNA_00752 at 811.025 kb on + strand, within CCNA_00752 at 811.033 kb on - strand, within CCNA_00752 at 811.033 kb on - strand, within CCNA_00752 at 811.054 kb on - strand, within CCNA_00752 at 811.061 kb on - strand, within CCNA_00752 at 811.116 kb on - strand, within CCNA_00752 at 811.138 kb on + strand, within CCNA_00752 at 811.175 kb on + strand at 811.177 kb on - strand at 811.183 kb on - strand at 811.218 kb on + strand at 811.302 kb on + strand at 811.310 kb on - strand at 811.310 kb on - strand at 811.342 kb on + strand at 811.342 kb on + strand at 811.350 kb on - strand at 811.350 kb on - strand at 811.352 kb on + strand at 811.352 kb on + strand at 811.352 kb on + strand at 811.352 kb on + strand at 811.358 kb on + strand at 811.360 kb on - strand at 811.360 kb on - strand at 811.391 kb on - strand at 811.418 kb on + strand at 811.433 kb on + strand at 811.465 kb on + strand at 811.465 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.476 kb on + strand at 811.483 kb on - strand at 811.483 kb on - strand at 811.483 kb on - strand at 811.528 kb on - strand, within CCNA_00753 at 811.534 kb on - strand, within CCNA_00753 at 811.540 kb on - strand, within CCNA_00753 at 811.540 kb on - strand, within CCNA_00753 at 811.542 kb on + strand, within CCNA_00753 at 811.637 kb on - strand, within CCNA_00753 at 811.638 kb on + strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.670 kb on - strand, within CCNA_00753 at 811.694 kb on + strand, within CCNA_00753 at 811.696 kb on + strand, within CCNA_00753 at 811.702 kb on - strand, within CCNA_00753 at 811.709 kb on + strand, within CCNA_00753 at 811.725 kb on - strand, within CCNA_00753 at 811.727 kb on - strand, within CCNA_00753 at 811.746 kb on + strand, within CCNA_00753 at 811.776 kb on + strand, within CCNA_00753 at 811.818 kb on - strand, within CCNA_00753 at 811.818 kb on - strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 812.002 kb on + strand, within CCNA_00753 at 812.004 kb on + strand, within CCNA_00753 at 812.010 kb on - strand, within CCNA_00753 at 812.010 kb on - strand, within CCNA_00753 at 812.010 kb on - strand, within CCNA_00753 at 812.033 kb on + strand, within CCNA_00753 at 812.033 kb on + strand, within CCNA_00753 at 812.033 kb on + strand, within CCNA_00753 at 812.036 kb on - strand, within CCNA_00753 at 812.041 kb on - strand, within CCNA_00753 at 812.051 kb on - strand, within CCNA_00753 at 812.065 kb on + strand, within CCNA_00753 at 812.082 kb on + strand, within CCNA_00753 at 812.085 kb on - strand, within CCNA_00753 at 812.114 kb on + strand, within CCNA_00753 at 812.122 kb on - strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.132 kb on - strand, within CCNA_00753 at 812.132 kb on - strand, within CCNA_00753 at 812.137 kb on - strand, within CCNA_00753 at 812.147 kb on - strand, within CCNA_00753 at 812.160 kb on + strand, within CCNA_00753 at 812.165 kb on + strand, within CCNA_00753 at 812.168 kb on - strand, within CCNA_00753 at 812.168 kb on - strand, within CCNA_00753 at 812.168 kb on - strand, within CCNA_00753 at 812.173 kb on - strand, within CCNA_00753 at 812.182 kb on + strand, within CCNA_00753 at 812.182 kb on + strand, within CCNA_00753 at 812.190 kb on - strand, within CCNA_00753 at 812.190 kb on - strand, within CCNA_00753 at 812.192 kb on - strand, within CCNA_00753 at 812.197 kb on - strand, within CCNA_00753 at 812.234 kb on + strand, within CCNA_00753 at 812.243 kb on - strand, within CCNA_00753 at 812.295 kb on + strand, within CCNA_00753 at 812.313 kb on - strand, within CCNA_00753 at 812.361 kb on - strand at 812.371 kb on + strand at 812.388 kb on - strand at 812.397 kb on + strand at 812.405 kb on - strand at 812.419 kb on + strand at 812.420 kb on + strand at 812.420 kb on + strand at 812.420 kb on + strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.429 kb on + strand at 812.435 kb on + strand at 812.441 kb on + strand at 812.443 kb on - strand at 812.508 kb on - strand at 812.593 kb on + strand at 812.603 kb on - strand at 812.603 kb on - strand at 812.605 kb on + strand at 812.613 kb on - strand at 812.638 kb on + strand at 812.643 kb on + strand at 812.643 kb on + strand at 812.651 kb on - strand at 812.653 kb on + strand at 812.653 kb on + strand at 812.721 kb on - strand, within CCNA_00754 at 812.721 kb on - strand, within CCNA_00754 at 812.721 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.732 kb on + strand, within CCNA_00754 at 812.736 kb on + strand, within CCNA_00754 at 812.736 kb on - strand, within CCNA_00754 at 812.743 kb on - strand, within CCNA_00754 at 812.743 kb on - strand, within CCNA_00754 at 812.744 kb on - strand, within CCNA_00754 at 812.744 kb on - strand, within CCNA_00754 at 812.776 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.869 kb on - strand, within CCNA_00754 at 812.871 kb on - strand, within CCNA_00754 at 812.923 kb on + strand, within CCNA_00754 at 812.942 kb on + strand, within CCNA_00754 at 813.034 kb on - strand, within CCNA_00754 at 813.055 kb on - strand, within CCNA_00754 at 813.100 kb on - strand, within CCNA_00754 at 813.126 kb on + strand, within CCNA_00754 at 813.154 kb on - strand, within CCNA_00754 at 813.154 kb on - strand, within CCNA_00754 at 813.157 kb on + strand, within CCNA_00754 at 813.178 kb on + strand, within CCNA_00754 at 813.222 kb on + strand, within CCNA_00754 at 813.281 kb on + strand at 813.291 kb on + strand at 813.291 kb on + strand at 813.300 kb on - strand at 813.313 kb on - strand at 813.317 kb on - strand at 813.320 kb on + strand at 813.320 kb on + strand at 813.320 kb on + strand at 813.328 kb on - strand at 813.333 kb on - strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.366 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.386 kb on + strand at 813.427 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 810,466 + +1.1 810,504 + CCNA_00752 0.14 -0.2 810,511 + CCNA_00752 0.14 +1.4 810,511 + CCNA_00752 0.14 +0.1 810,546 + CCNA_00752 0.18 +0.8 810,546 + CCNA_00752 0.18 -1.3 810,554 - CCNA_00752 0.19 +1.1 810,554 - CCNA_00752 0.19 +1.9 810,554 - CCNA_00752 0.19 +1.1 810,554 - CCNA_00752 0.19 +1.9 810,572 - CCNA_00752 0.21 +1.7 810,577 - CCNA_00752 0.22 +1.4 810,577 - CCNA_00752 0.22 +1.3 810,590 + +1.4 810,631 + CCNA_00752 0.28 +0.4 810,640 + CCNA_00752 0.29 +1.4 810,648 - CCNA_00752 0.30 +1.2 810,650 + CCNA_00752 0.30 -0.2 810,652 + CCNA_00752 0.30 -0.7 810,652 + CCNA_00752 0.30 +1.1 810,660 - CCNA_00752 0.31 +1.5 810,721 - CCNA_00752 0.38 +1.6 810,771 + CCNA_00752 0.44 +1.7 810,779 - CCNA_00752 0.45 +4.4 810,802 + CCNA_00752 0.48 -1.1 810,811 + CCNA_00752 0.49 +0.4 810,819 - CCNA_00752 0.49 +0.4 810,832 - CCNA_00752 0.51 +1.5 810,887 + CCNA_00752 0.57 +0.2 810,937 + CCNA_00752 0.63 +0.4 810,939 - CCNA_00752 0.63 +2.1 810,952 - CCNA_00752 0.65 +0.6 810,952 - CCNA_00752 0.65 +1.3 810,952 - CCNA_00752 0.65 +1.4 811,025 + CCNA_00752 0.73 +0.8 811,033 - CCNA_00752 0.74 +0.6 811,033 - CCNA_00752 0.74 +1.5 811,054 - CCNA_00752 0.76 +1.2 811,061 - CCNA_00752 0.77 +1.5 811,116 - CCNA_00752 0.83 +1.1 811,138 + CCNA_00752 0.86 +0.1 811,175 + +0.8 811,177 - +0.8 811,183 - +2.4 811,218 + -1.9 811,302 + +0.1 811,310 - +0.4 811,310 - +0.1 811,342 + +0.8 811,342 + -1.2 811,350 - +1.4 811,350 - +0.5 811,352 + -0.2 811,352 + -0.0 811,352 + -0.2 811,352 + +0.4 811,358 + -1.9 811,360 - +0.6 811,360 - -1.3 811,391 - +2.4 811,418 + +0.1 811,433 + -2.0 811,465 + +1.4 811,465 + -0.2 811,475 + +0.4 811,475 + +0.5 811,476 + -0.7 811,483 - +0.5 811,483 - +1.9 811,483 - +0.8 811,528 - CCNA_00753 0.12 +1.4 811,534 - CCNA_00753 0.13 -0.6 811,540 - CCNA_00753 0.13 -0.3 811,540 - CCNA_00753 0.13 -0.2 811,542 + CCNA_00753 0.14 +1.4 811,637 - CCNA_00753 0.23 -0.7 811,638 + CCNA_00753 0.23 -0.4 811,646 - CCNA_00753 0.24 +2.6 811,646 - CCNA_00753 0.24 -0.3 811,646 - CCNA_00753 0.24 -0.9 811,646 - CCNA_00753 0.24 -0.3 811,670 - CCNA_00753 0.26 -0.4 811,694 + CCNA_00753 0.28 -1.7 811,696 + CCNA_00753 0.29 +3.7 811,702 - CCNA_00753 0.29 -0.6 811,709 + CCNA_00753 0.30 +2.4 811,725 - CCNA_00753 0.31 +0.4 811,727 - CCNA_00753 0.32 -0.9 811,746 + CCNA_00753 0.33 -0.2 811,776 + CCNA_00753 0.36 -1.4 811,818 - CCNA_00753 0.40 +0.1 811,818 - CCNA_00753 0.40 +1.9 811,911 + CCNA_00753 0.49 +0.3 811,911 + CCNA_00753 0.49 +0.1 811,911 + CCNA_00753 0.49 -1.3 811,911 + CCNA_00753 0.49 -0.4 811,911 + CCNA_00753 0.49 -1.5 811,911 + CCNA_00753 0.49 +0.8 811,919 - CCNA_00753 0.50 +0.7 811,919 - CCNA_00753 0.50 +0.1 811,919 - CCNA_00753 0.50 -0.2 811,919 - CCNA_00753 0.50 +0.1 812,002 + CCNA_00753 0.58 +0.8 812,004 + CCNA_00753 0.58 +0.8 812,010 - CCNA_00753 0.59 +0.1 812,010 - CCNA_00753 0.59 -1.5 812,010 - CCNA_00753 0.59 +1.9 812,033 + CCNA_00753 0.61 -1.5 812,033 + CCNA_00753 0.61 +0.6 812,033 + CCNA_00753 0.61 +1.6 812,036 - CCNA_00753 0.61 +1.2 812,041 - CCNA_00753 0.62 +1.4 812,051 - CCNA_00753 0.63 +1.1 812,065 + CCNA_00753 0.64 -1.0 812,082 + CCNA_00753 0.66 -0.9 812,085 - CCNA_00753 0.66 +1.3 812,114 + CCNA_00753 0.69 +1.4 812,122 - CCNA_00753 0.70 +0.8 812,129 + CCNA_00753 0.70 +0.7 812,129 + CCNA_00753 0.70 -1.4 812,129 + CCNA_00753 0.70 -1.8 812,129 + CCNA_00753 0.70 +0.6 812,132 - CCNA_00753 0.71 +1.6 812,132 - CCNA_00753 0.71 +0.1 812,137 - CCNA_00753 0.71 -0.3 812,147 - CCNA_00753 0.72 +1.6 812,160 + CCNA_00753 0.73 +0.7 812,165 + CCNA_00753 0.74 -1.3 812,168 - CCNA_00753 0.74 +0.3 812,168 - CCNA_00753 0.74 +1.6 812,168 - CCNA_00753 0.74 +0.6 812,173 - CCNA_00753 0.74 +1.3 812,182 + CCNA_00753 0.75 -0.4 812,182 + CCNA_00753 0.75 +0.3 812,190 - CCNA_00753 0.76 -0.5 812,190 - CCNA_00753 0.76 +2.0 812,192 - CCNA_00753 0.76 +1.3 812,197 - CCNA_00753 0.77 +0.1 812,234 + CCNA_00753 0.80 +0.4 812,243 - CCNA_00753 0.81 -0.1 812,295 + CCNA_00753 0.86 -0.4 812,313 - CCNA_00753 0.88 -0.9 812,361 - +1.4 812,371 + +0.8 812,388 - +0.8 812,397 + +1.8 812,405 - -0.3 812,419 + -0.2 812,420 + +0.5 812,420 + +0.3 812,420 + +2.4 812,428 - +0.1 812,428 - +0.8 812,428 - -0.6 812,428 - +0.4 812,428 - -1.7 812,428 - -0.4 812,429 + +4.1 812,435 + +0.2 812,441 + +0.3 812,443 - +1.3 812,508 - +0.5 812,593 + +0.4 812,603 - +0.2 812,603 - +0.2 812,605 + +0.5 812,613 - -0.3 812,638 + -0.7 812,643 + +2.0 812,643 + -2.8 812,651 - +0.8 812,653 + -1.4 812,653 + +0.8 812,721 - CCNA_00754 0.18 +0.9 812,721 - CCNA_00754 0.18 +1.6 812,721 - CCNA_00754 0.18 +1.3 812,726 - CCNA_00754 0.19 +0.7 812,726 - CCNA_00754 0.19 +1.0 812,726 - CCNA_00754 0.19 +4.0 812,726 - CCNA_00754 0.19 +1.6 812,732 + CCNA_00754 0.20 -1.7 812,736 + CCNA_00754 0.20 +0.1 812,736 - CCNA_00754 0.20 +0.6 812,743 - CCNA_00754 0.21 +2.8 812,743 - CCNA_00754 0.21 +2.2 812,744 - CCNA_00754 0.21 +1.5 812,744 - CCNA_00754 0.21 -0.2 812,776 + CCNA_00754 0.26 +2.0 812,838 + CCNA_00754 0.35 +0.1 812,838 + CCNA_00754 0.35 +0.4 812,838 + CCNA_00754 0.35 -0.4 812,838 + CCNA_00754 0.35 +0.8 812,846 - CCNA_00754 0.36 +0.2 812,846 - CCNA_00754 0.36 -0.2 812,846 - CCNA_00754 0.36 +0.4 812,846 - CCNA_00754 0.36 +2.3 812,846 - CCNA_00754 0.36 +1.1 812,846 - CCNA_00754 0.36 -0.9 812,869 - CCNA_00754 0.39 -0.4 812,871 - CCNA_00754 0.39 +1.2 812,923 + CCNA_00754 0.47 +3.4 812,942 + CCNA_00754 0.49 +0.4 813,034 - CCNA_00754 0.63 +0.2 813,055 - CCNA_00754 0.66 -0.6 813,100 - CCNA_00754 0.72 -0.0 813,126 + CCNA_00754 0.76 +2.4 813,154 - CCNA_00754 0.80 -0.5 813,154 - CCNA_00754 0.80 +3.4 813,157 + CCNA_00754 0.80 -1.9 813,178 + CCNA_00754 0.83 -0.6 813,222 + CCNA_00754 0.89 +0.3 813,281 + +1.7 813,291 + -1.2 813,291 + -1.0 813,300 - +2.4 813,313 - +0.2 813,317 - +1.1 813,320 + +0.4 813,320 + -0.1 813,320 + +2.1 813,328 - -0.1 813,333 - +0.1 813,344 + +0.8 813,344 + +2.4 813,344 + +0.6 813,344 + +2.0 813,344 + +0.1 813,344 + +1.4 813,344 + +2.4 813,344 + -1.3 813,344 + -1.7 813,344 + +1.1 813,344 + -1.2 813,344 + -0.4 813,352 - +0.6 813,352 - +2.0 813,352 - +0.6 813,352 - +1.7 813,352 - +2.4 813,352 - -1.3 813,352 - -0.3 813,352 - +0.8 813,366 + +0.8 813,373 + -0.2 813,373 + +0.3 813,373 + +1.7 813,373 + -1.3 813,373 + -0.4 813,373 + -1.2 813,373 + -0.6 813,373 + +0.3 813,373 + +0.7 813,373 + -0.3 813,373 + +1.2 813,373 + +1.2 813,373 + +1.3 813,373 + +0.0 813,373 + -0.9 813,373 + -0.8 813,373 + +1.2 813,381 - +1.8 813,381 - +0.1 813,381 - -0.6 813,381 - +0.7 813,381 - +3.2 813,381 - +2.4 813,381 - -1.1 813,381 - -0.4 813,381 - -0.2 813,381 - +0.4 813,381 - +0.8 813,381 - -0.1 813,381 - -1.4 813,381 - +0.2 813,386 + -0.1 813,427 + -0.0
Or see this region's nucleotide sequence