Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00751

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00750 and CCNA_00751 are separated by 370 nucleotidesCCNA_00751 and CCNA_00752 are separated by 150 nucleotides CCNA_00750: CCNA_00750 - FeaR-family transcriptional regulator, at 807,593 to 808,621 _00750 CCNA_00751: CCNA_00751 - hypothetical protein, at 808,992 to 810,233 _00751 CCNA_00752: CCNA_00752 - 3-hydroxybutyryl-CoA dehydrogenase, at 810,384 to 811,262 _00752 Position (kb) 808 809 810 811Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 808.036 kb on - strand, within CCNA_00750at 808.041 kb on + strand, within CCNA_00750at 808.049 kb on - strand, within CCNA_00750at 808.049 kb on - strand, within CCNA_00750at 808.094 kb on - strand, within CCNA_00750at 808.109 kb on + strand, within CCNA_00750at 808.109 kb on + strand, within CCNA_00750at 808.109 kb on + strand, within CCNA_00750at 808.117 kb on - strand, within CCNA_00750at 808.117 kb on - strand, within CCNA_00750at 808.168 kb on + strand, within CCNA_00750at 808.168 kb on + strand, within CCNA_00750at 808.168 kb on - strand, within CCNA_00750at 808.191 kb on + strand, within CCNA_00750at 808.220 kb on + strand, within CCNA_00750at 808.232 kb on + strand, within CCNA_00750at 808.240 kb on - strand, within CCNA_00750at 808.300 kb on - strand, within CCNA_00750at 808.335 kb on - strand, within CCNA_00750at 808.392 kb on + strand, within CCNA_00750at 808.429 kb on - strand, within CCNA_00750at 808.434 kb on + strand, within CCNA_00750at 808.434 kb on + strand, within CCNA_00750at 808.434 kb on + strand, within CCNA_00750at 808.435 kb on - strand, within CCNA_00750at 808.442 kb on - strand, within CCNA_00750at 808.445 kb on + strand, within CCNA_00750at 808.463 kb on - strand, within CCNA_00750at 808.465 kb on + strand, within CCNA_00750at 808.465 kb on + strand, within CCNA_00750at 808.473 kb on - strand, within CCNA_00750at 808.482 kb on + strand, within CCNA_00750at 808.500 kb on - strand, within CCNA_00750at 808.511 kb on - strand, within CCNA_00750at 808.511 kb on - strand, within CCNA_00750at 808.511 kb on - strand, within CCNA_00750at 808.560 kb on + strandat 808.570 kb on - strandat 808.578 kb on - strandat 808.624 kb on + strandat 808.624 kb on + strandat 808.624 kb on - strandat 808.636 kb on + strandat 808.715 kb on + strandat 808.723 kb on - strandat 808.723 kb on - strandat 808.752 kb on - strandat 808.776 kb on + strandat 808.869 kb on - strandat 808.880 kb on - strandat 808.881 kb on - strandat 808.881 kb on - strandat 808.911 kb on - strandat 808.926 kb on - strandat 808.935 kb on + strandat 808.935 kb on + strandat 808.943 kb on - strandat 808.943 kb on - strandat 808.943 kb on - strandat 808.950 kb on + strandat 808.999 kb on - strandat 809.019 kb on - strandat 809.037 kb on + strandat 809.045 kb on - strandat 809.053 kb on - strandat 809.071 kb on + strandat 809.078 kb on + strandat 809.083 kb on + strandat 809.121 kb on + strand, within CCNA_00751at 809.124 kb on + strand, within CCNA_00751at 809.129 kb on - strand, within CCNA_00751at 809.129 kb on - strand, within CCNA_00751at 809.130 kb on - strand, within CCNA_00751at 809.136 kb on - strand, within CCNA_00751at 809.137 kb on - strand, within CCNA_00751at 809.137 kb on - strand, within CCNA_00751at 809.137 kb on - strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.159 kb on - strand, within CCNA_00751at 809.162 kb on + strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.170 kb on - strandat 809.181 kb on - strand, within CCNA_00751at 809.204 kb on + strand, within CCNA_00751at 809.206 kb on + strand, within CCNA_00751at 809.212 kb on - strand, within CCNA_00751at 809.248 kb on + strand, within CCNA_00751at 809.248 kb on + strand, within CCNA_00751at 809.258 kb on - strand, within CCNA_00751at 809.327 kb on - strand, within CCNA_00751at 809.334 kb on + strand, within CCNA_00751at 809.362 kb on + strand, within CCNA_00751at 809.390 kb on + strand, within CCNA_00751at 809.398 kb on - strand, within CCNA_00751at 809.413 kb on + strand, within CCNA_00751at 809.413 kb on + strand, within CCNA_00751at 809.418 kb on + strand, within CCNA_00751at 809.418 kb on + strand, within CCNA_00751at 809.418 kb on + strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.426 kb on - strand, within CCNA_00751at 809.426 kb on - strand, within CCNA_00751at 809.431 kb on - strand, within CCNA_00751at 809.431 kb on - strand, within CCNA_00751at 809.455 kb on - strand, within CCNA_00751at 809.458 kb on + strand, within CCNA_00751at 809.458 kb on + strand, within CCNA_00751at 809.472 kb on - strand, within CCNA_00751at 809.472 kb on - strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.496 kb on + strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.501 kb on + strand, within CCNA_00751at 809.516 kb on + strand, within CCNA_00751at 809.599 kb on + strand, within CCNA_00751at 809.617 kb on - strand, within CCNA_00751at 809.642 kb on + strand, within CCNA_00751at 809.648 kb on + strand, within CCNA_00751at 809.648 kb on + strand, within CCNA_00751at 809.656 kb on - strand, within CCNA_00751at 809.741 kb on - strand, within CCNA_00751at 809.759 kb on - strand, within CCNA_00751at 809.765 kb on + strand, within CCNA_00751at 809.765 kb on + strand, within CCNA_00751at 809.814 kb on + strand, within CCNA_00751at 809.829 kb on + strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.871 kb on + strand, within CCNA_00751at 809.923 kb on - strand, within CCNA_00751at 809.930 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.023 kb on - strand, within CCNA_00751at 810.023 kb on - strand, within CCNA_00751at 810.024 kb on - strand, within CCNA_00751at 810.024 kb on - strand, within CCNA_00751at 810.024 kb on - strand, within CCNA_00751at 810.065 kb on - strand, within CCNA_00751at 810.071 kb on - strand, within CCNA_00751at 810.081 kb on + strand, within CCNA_00751at 810.091 kb on + strand, within CCNA_00751at 810.123 kb on - strandat 810.133 kb on - strandat 810.171 kb on - strandat 810.189 kb on - strandat 810.195 kb on + strandat 810.195 kb on + strandat 810.203 kb on - strandat 810.203 kb on - strandat 810.237 kb on - strandat 810.242 kb on + strandat 810.248 kb on - strandat 810.329 kb on - strandat 810.466 kb on + strandat 810.504 kb on + strand, within CCNA_00752at 810.511 kb on + strand, within CCNA_00752at 810.511 kb on + strand, within CCNA_00752at 810.546 kb on + strand, within CCNA_00752at 810.546 kb on + strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.572 kb on - strand, within CCNA_00752at 810.577 kb on - strand, within CCNA_00752at 810.577 kb on - strand, within CCNA_00752at 810.590 kb on + strandat 810.631 kb on + strand, within CCNA_00752at 810.640 kb on + strand, within CCNA_00752at 810.648 kb on - strand, within CCNA_00752at 810.650 kb on + strand, within CCNA_00752at 810.652 kb on + strand, within CCNA_00752at 810.652 kb on + strand, within CCNA_00752at 810.660 kb on - strand, within CCNA_00752at 810.721 kb on - strand, within CCNA_00752at 810.771 kb on + strand, within CCNA_00752at 810.779 kb on - strand, within CCNA_00752at 810.802 kb on + strand, within CCNA_00752at 810.811 kb on + strand, within CCNA_00752at 810.819 kb on - strand, within CCNA_00752at 810.832 kb on - strand, within CCNA_00752at 810.887 kb on + strand, within CCNA_00752at 810.937 kb on + strand, within CCNA_00752at 810.939 kb on - strand, within CCNA_00752at 810.952 kb on - strand, within CCNA_00752at 810.952 kb on - strand, within CCNA_00752at 810.952 kb on - strand, within CCNA_00752at 811.025 kb on + strand, within CCNA_00752at 811.033 kb on - strand, within CCNA_00752at 811.033 kb on - strand, within CCNA_00752at 811.054 kb on - strand, within CCNA_00752at 811.061 kb on - strand, within CCNA_00752at 811.116 kb on - strand, within CCNA_00752at 811.138 kb on + strand, within CCNA_00752at 811.175 kb on + strandat 811.177 kb on - strandat 811.183 kb on - strandat 811.218 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
remove
808,036 - CCNA_00750 0.43 +2.1
808,041 + CCNA_00750 0.44 +0.6
808,049 - CCNA_00750 0.44 +2.9
808,049 - CCNA_00750 0.44 +2.0
808,094 - CCNA_00750 0.49 +2.4
808,109 + CCNA_00750 0.50 -0.6
808,109 + CCNA_00750 0.50 -1.3
808,109 + CCNA_00750 0.50 +0.6
808,117 - CCNA_00750 0.51 +2.8
808,117 - CCNA_00750 0.51 +3.1
808,168 + CCNA_00750 0.56 -1.5
808,168 + CCNA_00750 0.56 -0.6
808,168 - CCNA_00750 0.56 +1.7
808,191 + CCNA_00750 0.58 -0.6
808,220 + CCNA_00750 0.61 -0.5
808,232 + CCNA_00750 0.62 -0.2
808,240 - CCNA_00750 0.63 +2.0
808,300 - CCNA_00750 0.69 +2.3
808,335 - CCNA_00750 0.72 +1.4
808,392 + CCNA_00750 0.78 -1.4
808,429 - CCNA_00750 0.81 +1.7
808,434 + CCNA_00750 0.82 +0.4
808,434 + CCNA_00750 0.82 +0.5
808,434 + CCNA_00750 0.82 +0.5
808,435 - CCNA_00750 0.82 +1.0
808,442 - CCNA_00750 0.83 +1.4
808,445 + CCNA_00750 0.83 +1.4
808,463 - CCNA_00750 0.85 +1.8
808,465 + CCNA_00750 0.85 -1.1
808,465 + CCNA_00750 0.85 +0.4
808,473 - CCNA_00750 0.86 +2.0
808,482 + CCNA_00750 0.86 +1.6
808,500 - CCNA_00750 0.88 -0.2
808,511 - CCNA_00750 0.89 +2.1
808,511 - CCNA_00750 0.89 +1.3
808,511 - CCNA_00750 0.89 +1.5
808,560 + +0.9
808,570 - +1.1
808,578 - +2.6
808,624 + -0.4
808,624 + +0.1
808,624 - +1.4
808,636 + +1.4
808,715 + +1.1
808,723 - +0.9
808,723 - -0.4
808,752 - -1.6
808,776 + +2.2
808,869 - -0.0
808,880 - +0.2
808,881 - -0.1
808,881 - -1.5
808,911 - +1.4
808,926 - +2.4
808,935 + -1.9
808,935 + -1.1
808,943 - +1.5
808,943 - +0.4
808,943 - +1.8
808,950 + +2.4
808,999 - +2.0
809,019 - +2.0
809,037 + -1.6
809,045 - +1.8
809,053 - +2.0
809,071 + -0.9
809,078 + +0.4
809,083 + +0.4
809,121 + CCNA_00751 0.10 -1.3
809,124 + CCNA_00751 0.11 +1.4
809,129 - CCNA_00751 0.11 +1.5
809,129 - CCNA_00751 0.11 +1.6
809,130 - CCNA_00751 0.11 +2.4
809,136 - CCNA_00751 0.12 +0.6
809,137 - CCNA_00751 0.12 +1.6
809,137 - CCNA_00751 0.12 +1.6
809,137 - CCNA_00751 0.12 +2.3
809,156 + CCNA_00751 0.13 +1.1
809,156 + CCNA_00751 0.13 -0.7
809,156 + CCNA_00751 0.13 +0.8
809,156 + CCNA_00751 0.13 +0.4
809,156 + CCNA_00751 0.13 -0.0
809,159 - CCNA_00751 0.13 +1.2
809,162 + CCNA_00751 0.14 +0.4
809,164 - CCNA_00751 0.14 +1.7
809,164 - CCNA_00751 0.14 +1.2
809,164 - CCNA_00751 0.14 +0.8
809,164 - CCNA_00751 0.14 +1.6
809,170 - +4.0
809,181 - CCNA_00751 0.15 +1.6
809,204 + CCNA_00751 0.17 +0.4
809,206 + CCNA_00751 0.17 -1.5
809,212 - CCNA_00751 0.18 +1.3
809,248 + CCNA_00751 0.21 +1.4
809,248 + CCNA_00751 0.21 +0.8
809,258 - CCNA_00751 0.21 +1.5
809,327 - CCNA_00751 0.27 -0.8
809,334 + CCNA_00751 0.28 +0.8
809,362 + CCNA_00751 0.30 +0.7
809,390 + CCNA_00751 0.32 -0.7
809,398 - CCNA_00751 0.33 +0.4
809,413 + CCNA_00751 0.34 +0.7
809,413 + CCNA_00751 0.34 +0.4
809,418 + CCNA_00751 0.34 +0.8
809,418 + CCNA_00751 0.34 -0.2
809,418 + CCNA_00751 0.34 +0.8
809,421 - CCNA_00751 0.35 -0.5
809,421 - CCNA_00751 0.35 +0.2
809,421 - CCNA_00751 0.35 +0.8
809,426 - CCNA_00751 0.35 +0.3
809,426 - CCNA_00751 0.35 +2.4
809,431 - CCNA_00751 0.35 +4.8
809,431 - CCNA_00751 0.35 +0.1
809,455 - CCNA_00751 0.37 +1.6
809,458 + CCNA_00751 0.38 +0.4
809,458 + CCNA_00751 0.38 -0.4
809,472 - CCNA_00751 0.39 +1.1
809,472 - CCNA_00751 0.39 +0.4
809,491 + CCNA_00751 0.40 +3.4
809,491 + CCNA_00751 0.40 -0.6
809,491 + CCNA_00751 0.40 +1.4
809,491 + CCNA_00751 0.40 -1.2
809,491 + CCNA_00751 0.40 -1.7
809,496 + CCNA_00751 0.41 +1.1
809,499 - CCNA_00751 0.41 +1.7
809,499 - CCNA_00751 0.41 +0.9
809,501 + CCNA_00751 0.41 +1.7
809,516 + CCNA_00751 0.42 +1.0
809,599 + CCNA_00751 0.49 -1.9
809,617 - CCNA_00751 0.50 +1.1
809,642 + CCNA_00751 0.52 -1.7
809,648 + CCNA_00751 0.53 +0.8
809,648 + CCNA_00751 0.53 -1.4
809,656 - CCNA_00751 0.53 +1.0
809,741 - CCNA_00751 0.60 +1.7
809,759 - CCNA_00751 0.62 -0.3
809,765 + CCNA_00751 0.62 -0.7
809,765 + CCNA_00751 0.62 +0.1
809,814 + CCNA_00751 0.66 +1.4
809,829 + CCNA_00751 0.67 +0.2
809,867 - CCNA_00751 0.70 -0.5
809,867 - CCNA_00751 0.70 +0.7
809,867 - CCNA_00751 0.70 +0.4
809,867 - CCNA_00751 0.70 +0.4
809,867 - CCNA_00751 0.70 -1.4
809,871 + CCNA_00751 0.71 +2.4
809,923 - CCNA_00751 0.75 +0.2
809,930 + CCNA_00751 0.76 +0.1
810,015 + CCNA_00751 0.82 +0.1
810,015 + CCNA_00751 0.82 -0.5
810,015 + CCNA_00751 0.82 -0.4
810,015 + CCNA_00751 0.82 +1.2
810,015 + CCNA_00751 0.82 -2.0
810,015 + CCNA_00751 0.82 +0.4
810,023 - CCNA_00751 0.83 +0.1
810,023 - CCNA_00751 0.83 +1.4
810,024 - CCNA_00751 0.83 +1.0
810,024 - CCNA_00751 0.83 -0.3
810,024 - CCNA_00751 0.83 -1.3
810,065 - CCNA_00751 0.86 +1.6
810,071 - CCNA_00751 0.87 +1.6
810,081 + CCNA_00751 0.88 -1.0
810,091 + CCNA_00751 0.88 +0.1
810,123 - +1.1
810,133 - +0.7
810,171 - +3.0
810,189 - +1.6
810,195 + -0.6
810,195 + +0.3
810,203 - +1.7
810,203 - +3.8
810,237 - +2.2
810,242 + -0.5
810,248 - +2.8
810,329 - +2.0
810,466 + +1.1
810,504 + CCNA_00752 0.14 -0.2
810,511 + CCNA_00752 0.14 +1.4
810,511 + CCNA_00752 0.14 +0.1
810,546 + CCNA_00752 0.18 +0.8
810,546 + CCNA_00752 0.18 -1.3
810,554 - CCNA_00752 0.19 +1.1
810,554 - CCNA_00752 0.19 +1.9
810,554 - CCNA_00752 0.19 +1.1
810,554 - CCNA_00752 0.19 +1.9
810,572 - CCNA_00752 0.21 +1.7
810,577 - CCNA_00752 0.22 +1.4
810,577 - CCNA_00752 0.22 +1.3
810,590 + +1.4
810,631 + CCNA_00752 0.28 +0.4
810,640 + CCNA_00752 0.29 +1.4
810,648 - CCNA_00752 0.30 +1.2
810,650 + CCNA_00752 0.30 -0.2
810,652 + CCNA_00752 0.30 -0.7
810,652 + CCNA_00752 0.30 +1.1
810,660 - CCNA_00752 0.31 +1.5
810,721 - CCNA_00752 0.38 +1.6
810,771 + CCNA_00752 0.44 +1.7
810,779 - CCNA_00752 0.45 +4.4
810,802 + CCNA_00752 0.48 -1.1
810,811 + CCNA_00752 0.49 +0.4
810,819 - CCNA_00752 0.49 +0.4
810,832 - CCNA_00752 0.51 +1.5
810,887 + CCNA_00752 0.57 +0.2
810,937 + CCNA_00752 0.63 +0.4
810,939 - CCNA_00752 0.63 +2.1
810,952 - CCNA_00752 0.65 +0.6
810,952 - CCNA_00752 0.65 +1.3
810,952 - CCNA_00752 0.65 +1.4
811,025 + CCNA_00752 0.73 +0.8
811,033 - CCNA_00752 0.74 +0.6
811,033 - CCNA_00752 0.74 +1.5
811,054 - CCNA_00752 0.76 +1.2
811,061 - CCNA_00752 0.77 +1.5
811,116 - CCNA_00752 0.83 +1.1
811,138 + CCNA_00752 0.86 +0.1
811,175 + +0.8
811,177 - +0.8
811,183 - +2.4
811,218 + -1.9

Or see this region's nucleotide sequence